Wall clock time and date at job start Tue Mar 31 2020 23:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.30805 * 2 1 4 4 C 1.54390 * 110.34342 * 122.29219 * 2 1 3 5 5 N 1.48440 * 104.65449 * 142.74073 * 4 2 1 6 6 C 1.34774 * 127.98285 * 140.36976 * 5 4 2 7 7 O 1.21625 * 119.99615 * 176.22609 * 6 5 4 8 8 C 1.47164 * 120.00246 * 356.22904 * 6 5 4 9 9 C 1.38243 * 128.47937 * 186.29627 * 8 6 5 10 10 N 1.31238 * 111.89326 * 179.80815 * 9 8 6 11 11 N 1.27333 * 120.03606 * 0.53569 * 10 9 8 12 12 S 1.56638 * 109.74287 * 359.68921 * 11 10 9 13 13 C 1.48148 * 104.17657 * 320.43876 * 5 4 2 14 14 C 1.54286 * 110.34358 * 237.83002 * 2 1 3 15 15 H 1.08996 * 110.43198 * 0.04117 * 14 2 1 16 16 N 1.46901 * 110.34554 * 122.25738 * 14 2 1 17 17 C 1.46900 * 110.99823 * 201.98947 * 16 14 2 18 18 C 1.50698 * 109.46851 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00284 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99932 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00030 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99827 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99910 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00545 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99888 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46950 * 89.99899 * 25 23 21 27 27 H 1.48502 * 109.46981 * 209.99774 * 25 23 21 28 28 H 1.48495 * 109.46844 * 329.99803 * 25 23 21 29 29 H 1.09007 * 109.47149 * 182.17585 * 1 2 3 30 30 H 1.09002 * 109.46888 * 302.16977 * 1 2 3 31 31 H 1.08996 * 109.47634 * 62.17247 * 1 2 3 32 32 H 1.09003 * 110.40792 * 261.51979 * 4 2 1 33 33 H 1.08991 * 110.41067 * 23.83418 * 4 2 1 34 34 H 1.08004 * 124.05556 * 359.97438 * 9 8 6 35 35 H 1.09000 * 110.40953 * 280.72938 * 13 5 4 36 36 H 1.09000 * 110.40205 * 158.41622 * 13 5 4 37 37 H 1.00905 * 110.99759 * 78.03785 * 16 14 2 38 38 H 1.08999 * 109.47491 * 300.00107 * 17 16 14 39 39 H 1.09004 * 109.46811 * 60.00074 * 17 16 14 40 40 H 0.97001 * 119.99996 * 359.97438 * 20 18 17 41 41 H 0.96994 * 120.00813 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7734 1.2237 5 7 3.2689 -1.4842 0.7210 6 6 4.4460 -1.6704 1.3503 7 8 5.3166 -2.3389 0.8263 8 6 4.6780 -1.0651 2.6715 9 6 5.8439 -1.0411 3.4140 10 7 5.6865 -0.4061 4.5517 11 7 4.5524 0.0871 4.8547 12 16 3.5281 -0.1948 3.7037 13 6 2.8801 -1.9416 -0.6334 14 6 2.0663 -0.7702 -1.2245 15 1 1.2409 -1.1486 -1.8275 16 7 2.9331 0.0968 -2.0337 17 6 3.0298 -0.3963 -3.4141 18 6 3.9255 0.5161 -4.2118 19 8 4.4330 1.4823 -3.6826 20 7 4.1619 0.2590 -5.5135 21 6 4.9772 1.0887 -6.2391 22 1 5.4297 1.9486 -5.7677 23 6 5.2213 0.8234 -7.5810 24 7 4.6711 -0.2232 -8.1545 25 14 6.3316 1.9543 -8.5698 26 1 7.7344 1.4764 -8.4763 27 1 5.9014 1.9516 -9.9911 28 1 6.2415 3.3340 -8.0280 29 1 -0.3634 -1.0270 0.0390 30 1 -0.3633 0.5472 0.8699 31 1 -0.3634 0.4797 -0.9088 32 1 2.3400 -0.0816 2.0205 33 1 1.3227 -1.4862 1.5791 34 1 6.7735 -1.4887 3.0948 35 1 2.2639 -2.8384 -0.5694 36 1 3.7661 -2.1325 -1.2389 37 1 3.8476 0.1848 -1.6163 38 1 3.4469 -1.4033 -3.4119 39 1 2.0369 -0.4152 -3.8635 40 1 3.7558 -0.5135 -5.9369 41 1 4.8412 -0.4082 -9.0913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700256512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:18 Heat of formation + Delta-G solvation = -8.310342 kcal Electronic energy + Delta-G solvation = -26599.257962 eV Core-core repulsion = 22641.200341 eV Total energy + Delta-G solvation = -3958.057621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95307 -41.30168 -40.12908 -39.09728 -36.19774 -35.52873 -33.69789 -33.24478 -33.19170 -30.32196 -28.84418 -27.77484 -27.23647 -25.97253 -24.22923 -23.15744 -21.37739 -21.05255 -20.76965 -20.21777 -19.89634 -18.39519 -17.70844 -17.61978 -17.20162 -16.85749 -16.60835 -16.29936 -16.05476 -15.81778 -15.69893 -15.22745 -15.13548 -14.72372 -14.16308 -13.97209 -13.77946 -13.67753 -13.52040 -13.40254 -13.15562 -13.04298 -12.85035 -12.79270 -12.43441 -12.14105 -12.13020 -11.95535 -11.75794 -11.52030 -11.45201 -11.23768 -11.06949 -10.87475 -10.36997 -10.13928 -10.02066 -9.28125 -8.47766 -5.96330 -1.41623 -0.32112 0.35435 0.82239 1.36798 1.40761 1.52562 1.53302 1.75296 2.04910 2.28128 2.85231 2.89106 3.19620 3.21126 3.43010 3.48291 3.57617 3.76752 4.04233 4.15000 4.27914 4.31757 4.37065 4.50063 4.50371 4.58482 4.63613 4.65599 4.76545 4.89498 5.03904 5.19766 5.36936 5.40142 5.54128 5.90538 6.10210 6.15747 6.28129 6.52806 6.59363 6.71122 7.11974 7.55674 8.11323 8.69584 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.002458 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.859981 B =11390.618126 C =12232.063040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 H 0.080 0.920 4 C 0.096 3.904 5 N -0.615 5.615 6 C 0.617 3.383 7 O -0.560 6.560 8 C -0.305 4.305 9 C 0.073 3.927 10 N -0.276 5.276 11 N -0.304 5.304 12 S 0.523 5.477 13 C 0.076 3.924 14 C 0.078 3.922 15 H 0.125 0.875 16 N -0.669 5.669 17 C 0.063 3.937 18 C 0.435 3.565 19 O -0.627 6.627 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.225 0.775 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.337 0.663 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.397 0.603 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 -6.344 21.372 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.027 4.027 5 N -0.347 5.347 6 C 0.404 3.596 7 O -0.440 6.440 8 C -0.446 4.446 9 C -0.095 4.095 10 N -0.138 5.138 11 N -0.284 5.284 12 S 0.659 5.341 13 C -0.048 4.048 14 C -0.033 4.033 15 H 0.143 0.857 16 N -0.299 5.299 17 C -0.069 4.069 18 C 0.223 3.777 19 O -0.513 6.513 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.198 1.198 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.241 0.759 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.155 0.845 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.231 0.769 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.502 -4.672 22.640 26.772 hybrid contribution 2.452 -1.286 -1.808 3.307 sum -11.050 -5.958 20.832 24.322 Atomic orbital electron populations 1.21787 0.90926 1.03563 1.03093 1.22126 0.98196 0.99558 0.91252 0.90168 1.23267 0.86154 0.96359 0.96959 1.48868 1.12532 1.55031 1.18287 1.16209 0.81100 0.79808 0.82450 1.90867 1.44477 1.41575 1.67069 1.27879 1.00617 1.12919 1.03208 1.24719 1.00775 0.96083 0.87906 1.70863 1.13727 1.11371 1.17888 1.78491 1.02583 1.21670 1.25655 1.82276 1.17779 1.33166 1.00922 1.23363 0.99782 0.99617 0.82037 1.22932 0.95741 0.90021 0.94632 0.85699 1.60274 1.18295 1.50527 1.00841 1.21619 1.00232 0.95256 0.89776 1.20974 0.85703 0.88171 0.82851 1.90496 1.56374 1.33250 1.71201 1.41930 1.43616 1.26564 1.08901 1.19633 1.25381 1.08333 0.93022 0.90564 1.26005 0.99217 0.98559 0.97372 1.69656 1.44676 1.27851 1.13809 0.84964 0.78067 0.78107 0.77430 1.19818 1.19331 1.19822 0.90315 0.90575 0.92424 0.90579 0.85587 0.75898 0.86976 0.92126 0.84465 0.91794 0.86647 0.76879 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.93 71.98 0.64 -0.33 16 2 C -0.09 -1.14 3.45 -9.89 -0.03 -1.18 16 3 H 0.08 1.39 7.95 -2.39 -0.02 1.37 16 4 C 0.10 0.95 6.08 86.48 0.53 1.48 16 5 N -0.61 -10.99 3.33 -811.34 -2.70 -13.68 16 6 C 0.62 14.56 7.90 86.59 0.68 15.24 16 7 O -0.56 -17.94 17.28 -4.11 -0.07 -18.01 16 8 C -0.31 -5.93 6.69 24.62 0.16 -5.76 16 9 C 0.07 1.47 11.55 84.78 0.98 2.45 16 10 N -0.28 -6.21 11.54 -57.87 -0.67 -6.87 16 11 N -0.30 -6.19 12.51 37.02 0.46 -5.72 16 12 S 0.52 6.96 19.72 -56.49 -1.11 5.85 16 13 C 0.08 1.32 6.42 86.54 0.56 1.88 16 14 C 0.08 1.32 3.01 45.82 0.14 1.46 16 15 H 0.13 1.60 7.44 -2.39 -0.02 1.58 16 16 N -0.67 -18.92 5.78 -490.88 -2.84 -21.76 16 17 C 0.06 2.00 5.97 85.56 0.51 2.52 16 18 C 0.44 20.44 7.82 87.66 0.69 21.12 16 19 O -0.63 -34.83 15.78 -3.07 -0.05 -34.88 16 20 N -0.57 -29.21 5.29 -306.99 -1.62 -30.83 16 21 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 24 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 25 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 H 0.08 0.28 8.10 -2.38 -0.02 0.26 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.65 4.24 -17.88 -0.08 0.58 16 33 H 0.13 0.43 7.83 -2.39 -0.02 0.41 16 34 H 0.22 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.46 7.46 -2.39 -0.02 1.44 16 37 H 0.34 11.26 8.19 -89.69 -0.73 10.53 16 38 H 0.06 1.81 7.79 -2.39 -0.02 1.79 16 39 H 0.12 3.07 8.08 -2.38 -0.02 3.05 16 40 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 41 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -78.13 361.06 -0.58 -78.71 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.43 Total: 30.69 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.13 Total: 20.46 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -7.08 Total: -128.02 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -0.12 Total: -52.88 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.11 Total: 5.85 kcal Total: -78.13 -0.58 -78.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700256512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.400 kcal (2) G-P(sol) polarization free energy of solvation -78.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds