Wall clock time and date at job start Tue Mar 31 2020 22:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48492 * 109.47387 * 239.99751 * 3 2 1 5 5 H 1.48507 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47137 * 119.99381 * 3 2 1 7 7 C 1.38946 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00465 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99883 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99978 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99491 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46879 * 179.97438 * 12 10 9 14 14 C 1.46907 * 110.99949 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46947 * 179.97438 * 14 13 12 16 16 H 1.08996 * 112.85112 * 43.80584 * 15 14 13 17 17 C 1.53777 * 113.61078 * 174.99922 * 15 14 13 18 18 C 1.53784 * 87.08172 * 139.98329 * 17 15 14 19 19 H 1.09002 * 113.61454 * 219.93721 * 18 17 15 20 20 N 1.46499 * 113.61491 * 89.11442 * 18 17 15 21 21 C 1.34777 * 119.99665 * 155.28109 * 20 18 17 22 22 O 1.21563 * 120.00283 * 359.72077 * 21 20 18 23 23 C 1.47752 * 119.99635 * 179.72380 * 21 20 18 24 24 C 1.39355 * 124.11709 * 179.97438 * 23 21 20 25 25 N 1.30088 * 112.14836 * 179.97438 * 24 23 21 26 26 S 1.55930 * 108.75185 * 359.97438 * 25 24 23 27 27 N 1.31489 * 124.11679 * 359.70157 * 23 21 20 28 28 C 1.53777 * 113.61370 * 272.49475 * 15 14 13 29 29 H 0.97000 * 119.99718 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99215 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47422 * 60.00176 * 12 10 9 32 32 H 1.09002 * 109.47729 * 299.99716 * 12 10 9 33 33 H 1.00901 * 111.00044 * 303.95131 * 13 12 10 34 34 H 1.09001 * 109.46729 * 60.00017 * 14 13 12 35 35 H 1.08997 * 109.46921 * 300.00462 * 14 13 12 36 36 H 1.08999 * 113.61756 * 25.43839 * 17 15 14 37 37 H 1.08999 * 113.69433 * 254.54165 * 17 15 14 38 38 H 0.97001 * 119.99790 * 334.99822 * 20 18 17 39 39 H 1.07999 * 123.92473 * 359.97438 * 24 23 21 40 40 H 1.08999 * 113.61239 * 105.47178 * 28 15 14 41 41 H 1.08999 * 113.61926 * 334.57412 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0030 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4981 -7.2708 0.0026 15 6 2.5231 -8.4068 0.0025 16 1 3.3449 -8.2355 0.6977 17 6 1.8936 -9.8044 0.1253 18 6 2.9321 -10.2766 -0.9059 19 1 2.5324 -10.9780 -1.6384 20 7 4.1882 -10.7341 -0.3066 21 6 4.9714 -11.6086 -0.9686 22 8 4.6332 -12.0216 -2.0608 23 6 6.2412 -12.0653 -0.3669 24 6 7.1146 -12.9657 -0.9739 25 7 8.1614 -13.2046 -0.2394 26 16 8.0496 -12.3764 1.0770 27 7 6.6873 -11.6676 0.8044 28 6 2.9812 -8.8230 -1.4052 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6175 -4.9213 -0.8881 32 1 0.6168 -4.9201 0.8919 33 1 2.8333 -5.9128 -0.7788 34 1 0.8736 -7.3454 -0.8876 35 1 0.8729 -7.3451 0.8924 36 1 0.8662 -9.8538 -0.2356 37 1 2.0186 -10.2562 1.1093 38 1 4.4580 -10.4045 0.5648 39 1 6.9423 -13.4132 -1.9416 40 1 3.9853 -8.4813 -1.6564 41 1 2.2513 -8.6040 -2.1845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700629743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:05 Heat of formation + Delta-G solvation = 11.180117 kcal Electronic energy + Delta-G solvation = -25247.934982 eV Core-core repulsion = 21290.722530 eV Total energy + Delta-G solvation = -3957.212452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61237 -40.23640 -38.62464 -38.11741 -35.28596 -34.35413 -33.82837 -33.05551 -31.21259 -28.78904 -27.82346 -26.02978 -25.63990 -24.17784 -23.37324 -21.99280 -21.00337 -19.98699 -19.48605 -19.08141 -18.19427 -17.87267 -16.60886 -16.47028 -16.12178 -15.85958 -15.54515 -15.24916 -14.89080 -14.57729 -14.41235 -14.04958 -13.97708 -13.63904 -13.09883 -12.97842 -12.72621 -12.66813 -12.32337 -11.94299 -11.76950 -11.68332 -11.56166 -11.52814 -11.49559 -11.06383 -10.97679 -10.67578 -10.53804 -10.43889 -10.31661 -10.20179 -9.74409 -9.49477 -9.38769 -8.45020 -8.04028 -7.95004 -6.41065 -3.81916 -0.07458 0.88764 1.05706 1.12579 2.59415 2.66455 3.20549 3.26035 3.30568 3.91867 3.96504 4.06159 4.22914 4.24490 4.32157 4.51278 4.60520 4.62729 4.81071 4.98951 5.14154 5.25748 5.30089 5.42693 5.45768 5.50429 5.57830 5.68440 5.78704 5.83812 5.88412 5.96469 6.00102 6.02167 6.26929 6.34306 7.03457 7.25133 7.55527 7.66002 7.69338 8.06965 8.62171 9.18469 9.55141 10.06804 10.76606 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.001678 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.771651 B =16687.229973 C =17710.532572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.068 3.932 15 C -0.107 4.107 16 H 0.100 0.900 17 C -0.138 4.138 18 C 0.118 3.882 19 H 0.106 0.894 20 N -0.689 5.689 21 C 0.609 3.391 22 O -0.522 6.522 23 C 0.010 3.990 24 C 0.091 3.909 25 N -0.579 5.579 26 S 0.728 5.272 27 N -0.546 5.546 28 C -0.150 4.150 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.349 0.651 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.412 0.588 39 H 0.215 0.785 40 H 0.074 0.926 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.244 -27.501 1.268 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.301 5.301 14 C -0.061 4.061 15 C -0.125 4.125 16 H 0.118 0.882 17 C -0.177 4.177 18 C 0.013 3.987 19 H 0.124 0.876 20 N -0.339 5.339 21 C 0.389 3.611 22 O -0.397 6.397 23 C -0.166 4.166 24 C -0.103 4.103 25 N -0.420 5.420 26 S 0.770 5.230 27 N -0.397 5.397 28 C -0.188 4.188 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.248 0.752 39 H 0.231 0.769 40 H 0.092 0.908 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.076 -27.499 2.798 29.093 hybrid contribution -1.543 0.973 -1.877 2.617 sum 7.533 -26.526 0.921 27.590 Atomic orbital electron populations 1.69605 1.05922 1.28239 1.50584 1.25262 0.95646 0.99718 0.97337 0.85912 0.78751 0.80448 0.79065 1.19931 1.20983 1.19893 1.19656 0.93344 0.82271 1.47674 0.87997 1.41863 1.09192 1.04605 1.64412 1.19831 0.88394 0.84756 0.84422 1.90517 1.13796 1.87085 1.55389 1.21674 0.94400 0.91055 1.01121 1.60091 1.18827 0.99951 1.51227 1.21950 0.95070 0.88760 1.00331 1.22643 0.99037 0.93270 0.97580 0.88153 1.23342 0.98863 0.96055 0.99412 1.21942 0.83697 0.96317 0.96768 0.87590 1.45476 1.21497 1.44362 1.22604 1.16710 0.81152 0.79015 0.84246 1.90844 1.72097 1.57203 1.19550 1.22495 1.00739 1.01783 0.91537 1.23792 0.87474 0.96667 1.02348 1.72275 1.28553 1.29222 1.11912 1.79179 1.09058 1.18313 1.16465 1.72434 1.18237 1.28701 1.20297 1.23538 1.02834 0.95018 0.97428 0.91838 0.77459 0.93971 0.89651 0.83224 0.95345 0.91009 0.88404 0.90665 0.75196 0.76858 0.90762 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.40 5.29 -10.97 -0.06 -14.46 16 10 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 11 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.66 6.13 -115.05 -0.70 -11.36 16 14 C 0.07 0.79 5.52 -3.82 -0.02 0.76 16 15 C -0.11 -1.01 3.78 -89.81 -0.34 -1.35 16 16 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.14 -1.00 7.39 -25.92 -0.19 -1.19 16 18 C 0.12 0.99 4.32 -67.12 -0.29 0.70 16 19 H 0.11 0.94 7.47 -51.93 -0.39 0.55 16 20 N -0.69 -5.95 5.26 -53.99 -0.28 -6.23 16 21 C 0.61 6.06 7.82 -12.37 -0.10 5.96 16 22 O -0.52 -6.42 16.41 5.31 0.09 -6.33 16 23 C 0.01 0.08 6.81 -83.71 -0.57 -0.49 16 24 C 0.09 0.70 11.22 -17.87 -0.20 0.50 16 25 N -0.58 -4.54 11.41 19.43 0.22 -4.32 16 26 S 0.73 4.33 23.69 -107.50 -2.55 1.79 16 27 N -0.55 -4.42 11.00 23.18 0.26 -4.16 16 28 C -0.15 -1.39 7.43 -25.92 -0.19 -1.58 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 31 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 34 H 0.03 0.31 7.84 -51.93 -0.41 -0.10 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.41 3.22 8.29 -40.82 -0.34 2.88 16 39 H 0.22 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.81 7.89 -51.93 -0.41 0.40 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -33.64 370.64 -9.00 -42.64 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.09 Total: 14.03 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -2.26 Total: 6.50 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: 0.15 Total: -64.41 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.17 Total: -22.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -2.55 Total: 1.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.64 -9.00 -42.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700629743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.823 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds