Wall clock time and date at job start Tue Mar 31 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48492 * 109.47387 * 239.99751 * 3 2 1 5 5 H 1.48507 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47137 * 119.99381 * 3 2 1 7 7 C 1.38946 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00465 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99883 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99978 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99491 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46879 * 179.97438 * 12 10 9 14 14 C 1.46907 * 110.99949 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46947 * 179.97438 * 14 13 12 16 16 H 1.08996 * 112.85112 * 43.80584 * 15 14 13 17 17 C 1.53777 * 113.61078 * 174.99922 * 15 14 13 18 18 C 1.53784 * 87.08172 * 139.98329 * 17 15 14 19 19 H 1.09002 * 113.61454 * 219.93721 * 18 17 15 20 20 N 1.46499 * 113.61491 * 89.11442 * 18 17 15 21 21 C 1.34777 * 119.99665 * 155.28109 * 20 18 17 22 22 O 1.21563 * 120.00283 * 359.72077 * 21 20 18 23 23 C 1.47752 * 119.99635 * 179.72380 * 21 20 18 24 24 C 1.39355 * 124.11709 * 179.97438 * 23 21 20 25 25 N 1.30088 * 112.14836 * 179.97438 * 24 23 21 26 26 S 1.55930 * 108.75185 * 359.97438 * 25 24 23 27 27 N 1.31489 * 124.11679 * 359.70157 * 23 21 20 28 28 C 1.53777 * 113.61370 * 272.49475 * 15 14 13 29 29 H 0.97000 * 119.99718 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99215 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47422 * 60.00176 * 12 10 9 32 32 H 1.09002 * 109.47729 * 299.99716 * 12 10 9 33 33 H 1.00901 * 111.00044 * 303.95131 * 13 12 10 34 34 H 1.09001 * 109.46729 * 60.00017 * 14 13 12 35 35 H 1.08997 * 109.46921 * 300.00462 * 14 13 12 36 36 H 1.08999 * 113.61756 * 25.43839 * 17 15 14 37 37 H 1.08999 * 113.69433 * 254.54165 * 17 15 14 38 38 H 0.97001 * 119.99790 * 334.99822 * 20 18 17 39 39 H 1.07999 * 123.92473 * 359.97438 * 24 23 21 40 40 H 1.08999 * 113.61239 * 105.47178 * 28 15 14 41 41 H 1.08999 * 113.61926 * 334.57412 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0030 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4981 -7.2708 0.0026 15 6 2.5231 -8.4068 0.0025 16 1 3.3449 -8.2355 0.6977 17 6 1.8936 -9.8044 0.1253 18 6 2.9321 -10.2766 -0.9059 19 1 2.5324 -10.9780 -1.6384 20 7 4.1882 -10.7341 -0.3066 21 6 4.9714 -11.6086 -0.9686 22 8 4.6332 -12.0216 -2.0608 23 6 6.2412 -12.0653 -0.3669 24 6 7.1146 -12.9657 -0.9739 25 7 8.1614 -13.2046 -0.2394 26 16 8.0496 -12.3764 1.0770 27 7 6.6873 -11.6676 0.8044 28 6 2.9812 -8.8230 -1.4052 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6175 -4.9213 -0.8881 32 1 0.6168 -4.9201 0.8919 33 1 2.8333 -5.9128 -0.7788 34 1 0.8736 -7.3454 -0.8876 35 1 0.8729 -7.3451 0.8924 36 1 0.8662 -9.8538 -0.2356 37 1 2.0186 -10.2562 1.1093 38 1 4.4580 -10.4045 0.5648 39 1 6.9423 -13.4132 -1.9416 40 1 3.9853 -8.4813 -1.6564 41 1 2.2513 -8.6040 -2.1845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700629743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:04 Heat of formation + Delta-G solvation = -16.383531 kcal Electronic energy + Delta-G solvation = -25249.130232 eV Core-core repulsion = 21290.722530 eV Total energy + Delta-G solvation = -3958.407701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24221 -40.95110 -40.12827 -39.26864 -36.55163 -35.79164 -35.00157 -33.86109 -33.25224 -29.91094 -28.60437 -27.25184 -26.63543 -25.47110 -24.33255 -22.85604 -21.68141 -21.13462 -20.55432 -20.06503 -19.84208 -18.87967 -17.88408 -17.23746 -17.09932 -16.95860 -16.52629 -16.40020 -16.11656 -15.74912 -15.71206 -15.37638 -15.10470 -14.93470 -14.35558 -14.15604 -13.69910 -13.49576 -13.34326 -13.29388 -13.08122 -12.83888 -12.59915 -12.52692 -12.43771 -12.29932 -12.12808 -12.12409 -11.83602 -11.50689 -11.44345 -11.27541 -11.07202 -10.35697 -10.32842 -10.06177 -10.01934 -9.28605 -8.46701 -5.95640 -0.68021 0.32751 0.42292 0.60153 1.39766 1.41588 1.52603 1.91473 1.96564 2.05314 2.29249 2.94499 3.20466 3.36754 3.50161 3.55224 3.65836 3.76270 3.90491 3.98637 4.01452 4.33873 4.45648 4.46609 4.50892 4.56571 4.68975 4.78646 4.83754 4.87088 4.92005 5.08362 5.18373 5.23331 5.31350 5.40386 5.61065 5.91347 6.14480 6.33562 6.44192 6.60218 6.94716 7.12310 7.56161 8.11658 8.70354 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.001678 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.771651 B =16687.229973 C =17710.532572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.685 5.685 14 C 0.070 3.930 15 C -0.105 4.105 16 H 0.087 0.913 17 C -0.119 4.119 18 C 0.117 3.883 19 H 0.103 0.897 20 N -0.684 5.684 21 C 0.607 3.393 22 O -0.552 6.552 23 C -0.007 4.007 24 C 0.088 3.912 25 N -0.600 5.600 26 S 0.794 5.206 27 N -0.564 5.564 28 C -0.150 4.150 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.341 0.659 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.416 0.584 39 H 0.225 0.775 40 H 0.055 0.945 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 -28.142 1.907 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.068 4.068 13 N -0.317 5.317 14 C -0.058 4.058 15 C -0.124 4.124 16 H 0.106 0.894 17 C -0.157 4.157 18 C 0.012 3.988 19 H 0.121 0.879 20 N -0.334 5.334 21 C 0.388 3.612 22 O -0.429 6.429 23 C -0.180 4.180 24 C -0.103 4.103 25 N -0.442 5.442 26 S 0.835 5.165 27 N -0.416 5.416 28 C -0.189 4.189 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.253 0.747 39 H 0.241 0.759 40 H 0.074 0.926 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.467 -28.157 3.444 29.604 hybrid contribution -1.284 1.131 -2.003 2.635 sum 7.183 -27.027 1.441 28.002 Atomic orbital electron populations 1.69664 1.06788 1.29369 1.50187 1.26045 0.96580 1.02414 0.96247 0.84986 0.77765 0.76634 0.78927 1.19726 1.19410 1.19751 1.19631 0.92697 0.84102 1.50113 0.90404 1.41936 1.09342 1.04713 1.65035 1.20953 0.88278 0.86277 0.82148 1.90484 1.15966 1.88004 1.56713 1.21542 0.94067 0.88129 1.03044 1.60115 1.19146 1.01229 1.51184 1.22066 0.95482 0.86893 1.01406 1.22567 0.98561 0.93902 0.97352 0.89428 1.23279 0.99141 0.93679 0.99620 1.21953 0.83957 0.95580 0.97261 0.87874 1.45484 1.21456 1.43840 1.22601 1.16894 0.81532 0.78814 0.83916 1.90818 1.72951 1.58387 1.20778 1.22306 1.00760 1.02865 0.92075 1.23907 0.87212 0.96440 1.02774 1.72200 1.28874 1.30194 1.12956 1.78912 1.06906 1.16033 1.14617 1.72285 1.19566 1.29429 1.20308 1.23552 1.02007 0.95687 0.97633 0.91273 0.76930 0.91658 0.87743 0.84077 0.93843 0.90087 0.86661 0.89597 0.74707 0.75856 0.92617 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.34 -19.23 9.68 84.04 0.81 -18.41 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.59 5.29 -306.99 -1.62 -31.21 16 10 C 0.44 20.91 7.82 87.66 0.69 21.59 16 11 O -0.63 -35.10 15.78 -3.05 -0.05 -35.15 16 12 C 0.06 2.19 6.17 85.56 0.53 2.72 16 13 N -0.68 -21.10 6.13 -517.90 -3.17 -24.27 16 14 C 0.07 1.45 5.52 86.30 0.48 1.93 16 15 C -0.11 -1.84 3.78 -10.27 -0.04 -1.88 16 16 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 17 C -0.12 -1.44 7.39 31.12 0.23 -1.21 16 18 C 0.12 1.85 4.32 45.52 0.20 2.04 16 19 H 0.10 1.74 7.47 -2.39 -0.02 1.72 16 20 N -0.68 -11.49 5.26 -442.99 -2.33 -13.82 16 21 C 0.61 12.09 7.82 86.76 0.68 12.77 16 22 O -0.55 -13.75 16.41 -3.91 -0.06 -13.82 16 23 C -0.01 -0.12 6.81 41.98 0.29 0.17 16 24 C 0.09 1.34 11.22 85.22 0.96 2.29 16 25 N -0.60 -8.84 11.41 -92.46 -1.05 -9.90 16 26 S 0.79 8.37 23.69 -56.49 -1.34 7.04 16 27 N -0.56 -8.64 11.00 -80.58 -0.89 -9.53 16 28 C -0.15 -2.68 7.43 31.12 0.23 -2.44 16 29 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 31 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.34 11.33 8.43 -89.69 -0.76 10.57 16 34 H 0.04 0.80 7.84 -2.39 -0.02 0.78 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.12 1.06 8.10 -2.39 -0.02 1.05 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.42 6.25 8.29 -92.71 -0.77 5.49 16 39 H 0.23 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.63 7.89 -2.39 -0.02 1.61 16 Total: -1.00 -73.01 370.64 -3.84 -76.85 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -1.14 Total: 38.73 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 5.51 Total: 19.33 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -8.78 Total: -138.06 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.11 Total: -48.97 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 8.37 SS G_CDS: -1.34 Total: 7.04 kcal Total: -73.01 -3.84 -76.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700629743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.466 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds