Wall clock time and date at job start Tue Mar 31 2020 23:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.99611 * 2 1 4 4 C 1.54313 * 109.77208 * 121.14981 * 2 1 3 5 5 H 1.08996 * 110.92460 * 23.47583 * 4 2 1 6 6 N 1.46504 * 110.74446 * 260.21691 * 4 2 1 7 7 C 1.34780 * 119.99814 * 160.10650 * 6 4 2 8 8 O 1.21272 * 120.00141 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99742 * 180.02562 * 7 6 4 10 10 S 1.80997 * 109.46999 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99905 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00174 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99862 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47198 * 0.02562 * 15 13 11 17 17 H 1.48490 * 109.47156 * 120.00405 * 15 13 11 18 18 H 1.48503 * 109.46902 * 240.00389 * 15 13 11 19 19 C 1.55161 * 102.86131 * 141.88823 * 4 2 1 20 20 C 1.54905 * 101.58380 * 324.30412 * 19 4 2 21 21 N 1.47025 * 109.88558 * 238.90498 * 2 1 3 22 22 C 1.34771 * 125.65198 * 61.67479 * 21 2 1 23 23 O 1.21552 * 119.99915 * 359.72048 * 22 21 2 24 24 C 1.47870 * 120.00281 * 179.72094 * 22 21 2 25 25 N 1.34552 * 126.04700 * 359.97240 * 24 22 21 26 26 C 1.30868 * 107.26947 * 180.02562 * 25 24 22 27 27 N 1.34584 * 107.62357 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.74172 * 179.97438 * 27 26 25 29 29 N 1.28842 * 108.50460 * 359.97438 * 27 26 25 30 30 H 1.09002 * 109.46936 * 179.64103 * 1 2 3 31 31 H 1.08993 * 109.47302 * 299.64873 * 1 2 3 32 32 H 1.09004 * 109.46857 * 59.64388 * 1 2 3 33 33 H 0.97000 * 119.99964 * 340.10732 * 6 4 2 34 34 H 1.09006 * 109.47216 * 300.00509 * 9 7 6 35 35 H 1.09001 * 109.46907 * 60.00020 * 9 7 6 36 36 H 0.96998 * 120.00199 * 180.02562 * 14 13 11 37 37 H 1.08997 * 111.00413 * 206.23223 * 19 4 2 38 38 H 1.09003 * 111.00311 * 82.37619 * 19 4 2 39 39 H 1.08998 * 110.36778 * 278.17382 * 20 19 4 40 40 H 1.08997 * 110.46657 * 155.89378 * 20 19 4 41 41 H 1.08002 * 126.18380 * 180.26165 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0520 -0.7512 1.2428 5 1 1.3049 -1.4511 1.6168 6 7 2.4466 0.1924 2.2917 7 6 2.5448 -0.2234 3.5700 8 8 2.3070 -1.3787 3.8518 9 6 2.9502 0.7474 4.6490 10 16 2.9918 -0.1066 6.2443 11 6 3.4806 1.2239 7.2910 12 1 3.6539 2.2045 6.8727 13 6 3.6418 1.0121 8.6532 14 7 3.4302 -0.1828 9.1630 15 14 4.1593 2.4229 9.7629 16 1 4.3319 3.6540 8.9507 17 1 3.1138 2.6521 10.7922 18 1 5.4431 2.0842 10.4281 19 6 3.2889 -1.5100 0.6934 20 6 2.8192 -1.8763 -0.7366 21 7 2.0301 -0.7140 -1.1839 22 6 1.8087 -0.3613 -2.4657 23 8 1.1398 0.6216 -2.7187 24 6 2.3793 -1.1701 -3.5642 25 7 3.1341 -2.2752 -3.4244 26 6 3.4387 -2.6923 -4.6268 27 7 2.8734 -1.8457 -5.5072 28 1 2.9330 -1.9098 -6.4733 29 7 2.2397 -0.9361 -4.8507 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5083 0.8930 32 1 -0.3633 0.5194 -0.8868 33 1 2.6372 1.1164 2.0662 34 1 3.9393 1.1471 4.4253 35 1 2.2296 1.5641 4.6923 36 1 3.5425 -0.3307 10.1151 37 1 3.4896 -2.4064 1.2802 38 1 4.1638 -0.8607 0.6629 39 1 2.1972 -2.7711 -0.7141 40 1 3.6766 -2.0276 -1.3923 41 1 4.0328 -3.5611 -4.8689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701746890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:44 Heat of formation + Delta-G solvation = 30.432264 kcal Electronic energy + Delta-G solvation = -26164.198319 eV Core-core repulsion = 22207.820703 eV Total energy + Delta-G solvation = -3956.377616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.96894 -40.58761 -39.11473 -37.53539 -34.45775 -33.79540 -32.42492 -32.01615 -31.47277 -31.05073 -28.90242 -25.63207 -25.47655 -25.17621 -23.43034 -22.66280 -21.32975 -20.50429 -19.89684 -18.85618 -17.84169 -17.27687 -17.02107 -16.73276 -16.19275 -16.04100 -15.42959 -15.06769 -14.88635 -14.79858 -14.29649 -13.99203 -13.81088 -13.37070 -13.25813 -12.90144 -12.81664 -12.57744 -12.48083 -12.16459 -11.95454 -11.73497 -11.30558 -11.23398 -11.06518 -11.05408 -11.01388 -10.77647 -10.72463 -10.45338 -10.25152 -9.80286 -9.43688 -9.07588 -8.98881 -8.89184 -8.23233 -6.49562 -6.21560 -3.91877 0.92067 1.60743 1.94774 2.52160 2.97776 3.04958 3.05438 3.22190 3.28921 3.33493 3.54550 3.71943 4.01308 4.20571 4.21954 4.32443 4.51109 4.82844 4.98580 5.03133 5.10556 5.13880 5.19673 5.36295 5.42818 5.54989 5.60399 5.67332 5.78561 5.80332 5.88297 5.91045 5.97994 6.06210 6.10657 6.14879 6.20816 6.58991 7.07484 7.41154 7.60466 7.65711 7.80965 8.35926 8.57701 9.24171 10.85894 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.001921 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.915572 B =14574.677745 C =14846.698962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.085 0.915 4 C 0.142 3.858 5 H 0.108 0.892 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.148 4.148 20 C 0.102 3.898 21 N -0.594 5.594 22 C 0.630 3.370 23 O -0.516 6.516 24 C 0.153 3.847 25 N -0.481 5.481 26 C 0.199 3.801 27 N -0.400 5.400 28 H 0.453 0.547 29 N -0.249 5.249 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -4.784 -30.641 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.103 0.897 4 C 0.036 3.964 5 H 0.125 0.875 6 N -0.385 5.385 7 C 0.323 3.677 8 O -0.387 6.387 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.187 4.187 20 C -0.020 4.020 21 N -0.328 5.328 22 C 0.414 3.586 23 O -0.389 6.389 24 C -0.127 4.127 25 N -0.207 5.207 26 C -0.099 4.099 27 N -0.123 5.123 28 H 0.300 0.700 29 N -0.088 5.088 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.587 -5.845 -29.976 30.546 hybrid contribution 1.025 2.253 -0.547 2.535 sum 0.438 -3.592 -30.523 30.737 Atomic orbital electron populations 1.22162 0.93619 1.02913 1.03502 1.21744 0.95381 0.96342 0.83430 0.89690 1.21919 0.97049 0.91394 0.86084 0.87455 1.45960 1.72320 1.13302 1.06874 1.20302 0.76112 0.89077 0.82256 1.90702 1.47556 1.18809 1.81678 1.23537 1.04204 1.01975 1.00729 1.85386 1.89897 1.15254 0.92753 1.22914 1.53559 0.97122 0.94713 0.90854 1.24992 0.94917 0.96526 0.97176 1.70024 1.46078 1.20903 1.13280 0.86118 0.78294 0.81160 0.79933 1.19613 1.20579 1.20583 1.23305 0.98287 1.02218 0.94929 1.22625 0.96406 0.87729 0.95283 1.48084 1.51880 1.29132 1.03740 1.15782 0.80128 0.82925 0.79800 1.90842 1.39001 1.26241 1.82771 1.23677 1.02180 0.95826 0.91039 1.71425 1.15315 1.10874 1.23095 1.26731 0.99947 0.98602 0.84629 1.45282 1.36253 1.18908 1.11889 0.70002 1.74377 1.15446 1.12817 1.06170 0.92040 0.90893 0.90911 0.76595 0.89146 0.89119 0.92242 0.88699 0.90142 0.90787 0.87867 0.75262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.10 37.16 0.34 -1.39 16 2 C 0.13 1.42 3.21 -66.96 -0.21 1.21 16 3 H 0.09 0.88 7.70 -51.93 -0.40 0.48 16 4 C 0.14 1.62 2.75 -66.10 -0.18 1.44 16 5 H 0.11 1.38 7.41 -51.93 -0.38 0.99 16 6 N -0.73 -9.22 5.21 -52.03 -0.27 -9.49 16 7 C 0.54 9.48 7.84 -10.99 -0.09 9.39 16 8 O -0.51 -11.03 15.59 5.56 0.09 -10.94 16 9 C -0.15 -3.01 6.16 36.00 0.22 -2.78 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 12 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.15 -1.52 6.76 -24.58 -0.17 -1.69 16 20 C 0.10 0.95 6.14 -2.53 -0.02 0.93 16 21 N -0.59 -6.45 3.07 -164.11 -0.50 -6.95 16 22 C 0.63 7.97 7.66 -12.32 -0.09 7.87 16 23 O -0.52 -7.96 16.11 5.32 0.09 -7.88 16 24 C 0.15 1.66 7.79 -156.35 -1.22 0.44 16 25 N -0.48 -3.93 8.47 -12.36 -0.10 -4.04 16 26 C 0.20 0.76 13.14 -90.48 -1.19 -0.43 16 27 N -0.40 -1.71 6.93 29.56 0.20 -1.51 16 28 H 0.45 -0.07 8.96 -190.21 -1.71 -1.77 16 29 N -0.25 -2.41 12.30 32.07 0.39 -2.01 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.86 6.87 -51.93 -0.36 0.50 16 33 H 0.40 4.01 8.32 -40.82 -0.34 3.67 16 34 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 35 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.92 6.14 -51.93 -0.32 0.61 16 41 H 0.23 -0.33 8.06 -52.49 -0.42 -0.75 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -39.11 364.45 -9.96 -49.06 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.43 Total: -1.15 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.41 Total: 2.15 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.45 Total: -49.26 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.17 Total: -18.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.11 -9.96 -49.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701746890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.496 kcal (2) G-P(sol) polarization free energy of solvation -39.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds