Wall clock time and date at job start Tue Mar 31 2020 23:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.99611 * 2 1 4 4 C 1.54313 * 109.77208 * 121.14981 * 2 1 3 5 5 H 1.08996 * 110.92460 * 23.47583 * 4 2 1 6 6 N 1.46504 * 110.74446 * 260.21691 * 4 2 1 7 7 C 1.34780 * 119.99814 * 160.10650 * 6 4 2 8 8 O 1.21272 * 120.00141 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99742 * 180.02562 * 7 6 4 10 10 S 1.80997 * 109.46999 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99905 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00174 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99862 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47198 * 0.02562 * 15 13 11 17 17 H 1.48490 * 109.47156 * 120.00405 * 15 13 11 18 18 H 1.48503 * 109.46902 * 240.00389 * 15 13 11 19 19 C 1.55161 * 102.86131 * 141.88823 * 4 2 1 20 20 C 1.54905 * 101.58380 * 324.30412 * 19 4 2 21 21 N 1.47025 * 109.88558 * 238.90498 * 2 1 3 22 22 C 1.34771 * 125.65198 * 61.67479 * 21 2 1 23 23 O 1.21552 * 119.99915 * 359.72048 * 22 21 2 24 24 C 1.47870 * 120.00281 * 179.72094 * 22 21 2 25 25 N 1.34552 * 126.04700 * 359.97240 * 24 22 21 26 26 C 1.30868 * 107.26947 * 180.02562 * 25 24 22 27 27 N 1.34584 * 107.62357 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.74172 * 179.97438 * 27 26 25 29 29 N 1.28842 * 108.50460 * 359.97438 * 27 26 25 30 30 H 1.09002 * 109.46936 * 179.64103 * 1 2 3 31 31 H 1.08993 * 109.47302 * 299.64873 * 1 2 3 32 32 H 1.09004 * 109.46857 * 59.64388 * 1 2 3 33 33 H 0.97000 * 119.99964 * 340.10732 * 6 4 2 34 34 H 1.09006 * 109.47216 * 300.00509 * 9 7 6 35 35 H 1.09001 * 109.46907 * 60.00020 * 9 7 6 36 36 H 0.96998 * 120.00199 * 180.02562 * 14 13 11 37 37 H 1.08997 * 111.00413 * 206.23223 * 19 4 2 38 38 H 1.09003 * 111.00311 * 82.37619 * 19 4 2 39 39 H 1.08998 * 110.36778 * 278.17382 * 20 19 4 40 40 H 1.08997 * 110.46657 * 155.89378 * 20 19 4 41 41 H 1.08002 * 126.18380 * 180.26165 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0520 -0.7512 1.2428 5 1 1.3049 -1.4511 1.6168 6 7 2.4466 0.1924 2.2917 7 6 2.5448 -0.2234 3.5700 8 8 2.3070 -1.3787 3.8518 9 6 2.9502 0.7474 4.6490 10 16 2.9918 -0.1066 6.2443 11 6 3.4806 1.2239 7.2910 12 1 3.6539 2.2045 6.8727 13 6 3.6418 1.0121 8.6532 14 7 3.4302 -0.1828 9.1630 15 14 4.1593 2.4229 9.7629 16 1 4.3319 3.6540 8.9507 17 1 3.1138 2.6521 10.7922 18 1 5.4431 2.0842 10.4281 19 6 3.2889 -1.5100 0.6934 20 6 2.8192 -1.8763 -0.7366 21 7 2.0301 -0.7140 -1.1839 22 6 1.8087 -0.3613 -2.4657 23 8 1.1398 0.6216 -2.7187 24 6 2.3793 -1.1701 -3.5642 25 7 3.1341 -2.2752 -3.4244 26 6 3.4387 -2.6923 -4.6268 27 7 2.8734 -1.8457 -5.5072 28 1 2.9330 -1.9098 -6.4733 29 7 2.2397 -0.9361 -4.8507 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5083 0.8930 32 1 -0.3633 0.5194 -0.8868 33 1 2.6372 1.1164 2.0662 34 1 3.9393 1.1471 4.4253 35 1 2.2296 1.5641 4.6923 36 1 3.5425 -0.3307 10.1151 37 1 3.4896 -2.4064 1.2802 38 1 4.1638 -0.8607 0.6629 39 1 2.1972 -2.7711 -0.7141 40 1 3.6766 -2.0276 -1.3923 41 1 4.0328 -3.5611 -4.8689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701746890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:43 Heat of formation + Delta-G solvation = 1.524199 kcal Electronic energy + Delta-G solvation = -26165.451866 eV Core-core repulsion = 22207.820703 eV Total energy + Delta-G solvation = -3957.631164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.47633 -41.56421 -40.37572 -38.60480 -35.45456 -34.57143 -34.52800 -32.70776 -32.27792 -32.08564 -30.27668 -27.66641 -26.39274 -26.11760 -23.87887 -23.47102 -22.30179 -21.71858 -20.60219 -19.82405 -19.44973 -18.19578 -17.98989 -17.53127 -17.23223 -17.09088 -16.85900 -16.37428 -16.31149 -15.75208 -15.65759 -15.13324 -14.83150 -14.75606 -14.43180 -14.19156 -13.95146 -13.61232 -13.36158 -13.28440 -13.13337 -12.90759 -12.88154 -12.64076 -12.57334 -12.26140 -11.92540 -11.73217 -11.69201 -11.48813 -11.33302 -11.13872 -10.93417 -10.82004 -10.23982 -10.10973 -9.82716 -8.62744 -8.32891 -6.09710 0.25723 1.14499 1.21772 1.35432 1.42504 1.50488 1.60857 1.63265 2.05180 2.18168 2.28266 2.34908 2.92963 3.01412 3.30804 3.34706 3.49235 3.63382 3.91304 3.96011 4.03350 4.15767 4.21536 4.27449 4.35505 4.55406 4.56364 4.69707 4.76983 4.89156 4.95815 5.02579 5.10396 5.16084 5.20718 5.33225 5.44800 5.47653 5.94949 6.22061 6.22378 6.48527 6.76363 7.06148 7.09054 7.24451 8.76382 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.001921 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.915572 B =14574.677745 C =14846.698962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.091 0.909 4 C 0.143 3.857 5 H 0.095 0.905 6 N -0.705 5.705 7 C 0.542 3.458 8 O -0.556 6.556 9 C -0.131 4.131 10 S -0.146 6.146 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.258 1.258 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.142 4.142 20 C 0.112 3.888 21 N -0.591 5.591 22 C 0.625 3.375 23 O -0.556 6.556 24 C 0.126 3.874 25 N -0.505 5.505 26 C 0.222 3.778 27 N -0.383 5.383 28 H 0.472 0.528 29 N -0.279 5.279 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.416 0.584 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -4.243 -32.439 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.109 0.891 4 C 0.037 3.963 5 H 0.113 0.887 6 N -0.359 5.359 7 C 0.328 3.672 8 O -0.434 6.434 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.181 4.181 20 C -0.010 4.010 21 N -0.324 5.324 22 C 0.410 3.590 23 O -0.431 6.431 24 C -0.153 4.153 25 N -0.232 5.232 26 C -0.074 4.074 27 N -0.108 5.108 28 H 0.323 0.677 29 N -0.120 5.120 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.254 0.746 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 0.755 -5.295 -31.844 32.290 hybrid contribution 0.626 2.009 -0.206 2.115 sum 1.381 -3.286 -32.050 32.247 Atomic orbital electron populations 1.22102 0.93635 1.02811 1.03108 1.21675 0.95305 0.96500 0.83029 0.89081 1.21933 0.97550 0.91069 0.85705 0.88673 1.45651 1.70477 1.14390 1.05398 1.19948 0.75967 0.87988 0.83274 1.90697 1.49822 1.20339 1.82500 1.23383 1.06071 1.01858 0.96941 1.85532 1.90241 1.18135 0.98013 1.23248 1.53389 0.97367 0.95336 0.89973 1.26095 0.94707 0.99418 0.98921 1.70180 1.47344 1.23398 1.13786 0.84930 0.77900 0.77704 0.77573 1.18124 1.20038 1.19952 1.23244 0.97743 1.01835 0.95266 1.22619 0.96601 0.87263 0.94519 1.48103 1.51579 1.29325 1.03437 1.16114 0.79650 0.82701 0.80519 1.90803 1.40862 1.28022 1.83462 1.23336 1.04012 0.97106 0.90854 1.71356 1.15898 1.10461 1.25499 1.27715 0.98057 0.98561 0.83086 1.45273 1.34915 1.17723 1.12917 0.67704 1.74269 1.16751 1.14782 1.06233 0.92024 0.90283 0.92211 0.74648 0.87136 0.87235 0.92027 0.89298 0.89581 0.90259 0.86974 0.69964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.10 71.98 0.66 -2.67 16 2 C 0.14 2.82 3.21 45.34 0.15 2.97 16 3 H 0.09 1.77 7.70 -2.39 -0.02 1.75 16 4 C 0.14 3.13 2.75 46.18 0.13 3.26 16 5 H 0.10 2.41 7.41 -2.39 -0.02 2.40 16 6 N -0.71 -16.75 5.21 -436.93 -2.27 -19.02 16 7 C 0.54 18.78 7.84 87.66 0.69 19.47 16 8 O -0.56 -24.15 15.59 -3.01 -0.05 -24.20 16 9 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 10 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 11 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.75 5.49 84.86 0.47 1.22 16 14 N -0.91 -55.54 13.22 21.65 0.29 -55.26 16 15 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.14 -2.74 6.76 31.99 0.22 -2.52 16 20 C 0.11 1.95 6.14 86.85 0.53 2.48 16 21 N -0.59 -12.50 3.07 -791.41 -2.43 -14.92 16 22 C 0.62 15.84 7.66 86.79 0.66 16.51 16 23 O -0.56 -17.61 16.11 -3.88 -0.06 -17.67 16 24 C 0.13 2.65 7.79 137.13 1.07 3.71 16 25 N -0.50 -7.23 8.47 -193.03 -1.63 -8.87 16 26 C 0.22 0.95 13.14 180.30 2.37 3.32 16 27 N -0.38 -2.34 6.93 -60.38 -0.42 -2.75 16 28 H 0.47 -1.45 8.96 -219.80 -1.97 -3.42 16 29 N -0.28 -5.14 12.30 -52.44 -0.64 -5.78 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.44 6.87 -2.38 -0.02 1.42 16 33 H 0.42 7.37 8.32 -92.71 -0.77 6.59 16 34 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 35 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.82 6.14 -2.39 -0.01 1.81 16 41 H 0.29 -2.33 8.06 -2.91 -0.02 -2.35 16 Total: -1.00 -88.73 364.45 0.02 -88.71 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -1.64 Total: 10.38 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 8.02 Total: 12.99 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -7.11 Total: -106.60 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.11 Total: -41.87 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -88.73 0.02 -88.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701746890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.238 kcal (2) G-P(sol) polarization free energy of solvation -88.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds