Wall clock time and date at job start Tue Mar 31 2020 23:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99847 * 2 1 4 4 C 1.54323 * 109.88138 * 121.09198 * 2 1 3 5 5 H 1.09003 * 110.72279 * 260.14909 * 4 2 1 6 6 N 1.46506 * 110.72190 * 23.24691 * 4 2 1 7 7 C 1.34768 * 120.00142 * 202.55880 * 6 4 2 8 8 O 1.21279 * 120.00177 * 0.02562 * 7 6 4 9 9 C 1.50706 * 120.00164 * 179.97438 * 7 6 4 10 10 S 1.80994 * 109.47363 * 180.02562 * 9 7 6 11 11 C 1.76195 * 100.00323 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99420 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00618 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99497 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00327 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47207 * 59.99355 * 15 13 11 17 17 H 1.48498 * 109.47114 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46821 * 299.99610 * 15 13 11 19 19 C 1.55153 * 103.10236 * 141.69887 * 4 2 1 20 20 C 1.54915 * 101.58175 * 324.40929 * 19 4 2 21 21 N 1.47418 * 104.83062 * 37.01067 * 20 19 4 22 22 C 1.34774 * 125.64846 * 155.91573 * 21 20 19 23 23 O 1.21558 * 120.00102 * 179.97438 * 22 21 20 24 24 C 1.47864 * 120.00048 * 359.97019 * 22 21 20 25 25 N 1.34554 * 126.04838 * 359.69411 * 24 22 21 26 26 C 1.30873 * 107.26639 * 179.87018 * 25 24 22 27 27 N 1.34582 * 107.62769 * 0.38486 * 26 25 24 28 28 H 0.97000 * 125.74831 * 179.72493 * 27 26 25 29 29 N 1.28850 * 108.50526 * 359.75919 * 27 26 25 30 30 H 1.09002 * 109.47088 * 298.90998 * 1 2 3 31 31 H 1.09002 * 109.46749 * 58.90726 * 1 2 3 32 32 H 1.08991 * 109.47215 * 178.90757 * 1 2 3 33 33 H 0.97002 * 119.99472 * 22.55677 * 6 4 2 34 34 H 1.09000 * 109.46823 * 300.00381 * 9 7 6 35 35 H 1.09001 * 109.46865 * 60.00185 * 9 7 6 36 36 H 0.96997 * 119.99421 * 179.97438 * 14 13 11 37 37 H 1.09003 * 111.00505 * 82.48412 * 19 4 2 38 38 H 1.09001 * 111.00757 * 206.33495 * 19 4 2 39 39 H 1.09004 * 110.36209 * 155.84789 * 20 19 4 40 40 H 1.08998 * 110.36590 * 278.17045 * 20 19 4 41 41 H 1.08000 * 126.18037 * 180.12456 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.3500 -0.0460 2.0213 6 7 1.0471 -1.6854 1.7476 7 6 1.0898 -2.0938 3.0312 8 8 1.9621 -1.6862 3.7686 9 6 0.0529 -3.0562 3.5506 10 16 0.3775 -3.4089 5.2959 11 6 -0.9435 -4.5249 5.6336 12 1 -1.6427 -4.7859 4.8528 13 6 -1.0864 -5.0676 6.9030 14 7 -0.2345 -4.7490 7.8546 15 14 -2.4865 -6.2513 7.2607 16 1 -2.3708 -7.4371 6.3744 17 1 -2.4183 -6.6844 8.6795 18 1 -3.7839 -5.5726 7.0127 19 6 3.2897 -1.5140 0.6970 20 6 2.8201 -1.8832 -0.7324 21 7 2.0353 -0.7199 -1.1840 22 6 1.8149 -0.3712 -2.4671 23 8 1.1490 0.6127 -2.7238 24 6 2.3834 -1.1856 -3.5626 25 7 3.1394 -2.2893 -3.4185 26 6 3.4385 -2.7147 -4.6195 27 7 2.8751 -1.8702 -5.5031 28 1 2.9345 -1.9380 -6.4689 29 7 2.2442 -0.9561 -4.8500 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3633 -1.0274 -0.0196 33 1 0.3492 -2.0112 1.1578 34 1 -0.9377 -2.6132 3.4479 35 1 0.0977 -3.9826 2.9779 36 1 -0.3346 -5.1280 8.7419 37 1 4.1668 -0.8677 0.6653 38 1 3.4870 -2.4092 1.2868 39 1 3.6789 -2.0382 -1.3856 40 1 2.1952 -2.7759 -0.7077 41 1 4.0336 -3.5838 -4.8582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701746891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:47 Heat of formation + Delta-G solvation = 36.166890 kcal Electronic energy + Delta-G solvation = -26498.496015 eV Core-core repulsion = 22542.367071 eV Total energy + Delta-G solvation = -3956.128944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.94655 -40.67854 -39.08174 -37.49951 -34.42305 -33.66283 -32.42149 -31.96447 -31.50805 -30.98018 -28.75416 -25.91964 -25.48105 -25.28490 -23.41558 -22.62632 -21.41648 -20.15181 -19.79113 -18.84973 -17.93783 -17.20698 -17.09214 -16.74085 -16.29523 -15.97849 -15.33705 -15.04984 -14.94909 -14.79653 -14.17396 -13.89118 -13.69835 -13.54844 -13.27799 -13.12419 -12.73157 -12.55293 -12.51905 -12.11108 -11.77565 -11.52981 -11.36850 -11.19763 -11.11723 -11.03396 -11.03253 -10.77856 -10.72923 -10.41617 -10.23174 -9.81874 -9.41693 -9.05888 -8.96685 -8.89259 -8.23592 -6.49225 -6.21006 -3.91431 0.93963 1.62748 1.98551 2.58755 2.98757 3.03642 3.06741 3.24085 3.28064 3.31411 3.57330 3.70553 4.03707 4.21185 4.23929 4.33305 4.49313 4.83341 4.98214 5.02901 5.13049 5.14127 5.21501 5.38159 5.44135 5.54688 5.61557 5.68193 5.80608 5.83097 5.88017 5.89734 5.94137 6.01412 6.13072 6.15051 6.23441 6.62466 7.09978 7.43151 7.59975 7.68055 7.82931 8.35687 8.59671 9.24333 10.86318 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.002175 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.161475 B =12872.635736 C =13246.145797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.094 0.906 4 C 0.140 3.860 5 H 0.112 0.888 6 N -0.730 5.730 7 C 0.535 3.465 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.146 4.146 20 C 0.101 3.899 21 N -0.597 5.597 22 C 0.629 3.371 23 O -0.517 6.517 24 C 0.153 3.847 25 N -0.480 5.480 26 C 0.198 3.802 27 N -0.401 5.401 28 H 0.453 0.547 29 N -0.249 5.249 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 4.469 -27.930 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.112 0.888 4 C 0.033 3.967 5 H 0.130 0.870 6 N -0.386 5.386 7 C 0.321 3.679 8 O -0.389 6.389 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.185 4.185 20 C -0.021 4.021 21 N -0.331 5.331 22 C 0.413 3.587 23 O -0.390 6.390 24 C -0.128 4.128 25 N -0.207 5.207 26 C -0.099 4.099 27 N -0.123 5.123 28 H 0.300 0.700 29 N -0.089 5.089 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.997 6.115 -26.478 28.625 hybrid contribution -1.973 -1.913 -1.773 3.270 sum 7.024 4.202 -28.250 29.412 Atomic orbital electron populations 1.22096 0.93912 1.02465 1.03713 1.21999 0.95446 0.96508 0.83079 0.88818 1.21831 0.88366 0.91841 0.94618 0.87030 1.46171 1.31975 1.48373 1.12098 1.20307 0.85703 0.81032 0.80866 1.90705 1.36452 1.55552 1.56187 1.23536 1.00151 1.00238 1.06539 1.85375 1.40297 1.59069 0.98434 1.22827 1.14925 1.31275 0.99393 0.91006 1.24987 0.96870 0.96610 0.95104 1.70008 1.35238 1.42287 1.02755 0.86230 0.81364 0.80482 0.77463 1.19958 1.20826 1.19953 1.23278 0.97769 1.02284 0.95208 1.22624 0.96383 0.87579 0.95531 1.48367 1.51933 1.29001 1.03828 1.15800 0.80091 0.82946 0.79870 1.90841 1.39144 1.26264 1.82723 1.23714 1.02126 0.95895 0.91025 1.71434 1.15331 1.10759 1.23164 1.26733 0.99956 0.98648 0.84589 1.45283 1.36457 1.18722 1.11883 0.70025 1.74383 1.15507 1.12689 1.06307 0.90606 0.90815 0.92292 0.76387 0.89231 0.89255 0.92139 0.89680 0.88788 0.88012 0.91078 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.48 37.16 0.32 -1.36 16 2 C 0.13 1.36 3.45 -66.70 -0.23 1.13 16 3 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 4 C 0.14 1.55 3.13 -66.10 -0.21 1.34 16 5 H 0.11 1.36 7.62 -51.93 -0.40 0.96 16 6 N -0.73 -9.19 4.56 -52.03 -0.24 -9.42 16 7 C 0.53 9.39 7.85 -10.99 -0.09 9.31 16 8 O -0.52 -11.00 15.55 5.56 0.09 -10.91 16 9 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 10 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 11 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 12 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 15 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C -0.15 -1.45 6.77 -24.58 -0.17 -1.61 16 20 C 0.10 0.95 6.12 -2.53 -0.02 0.93 16 21 N -0.60 -6.38 3.08 -163.76 -0.50 -6.88 16 22 C 0.63 7.94 7.66 -12.32 -0.09 7.85 16 23 O -0.52 -7.95 16.15 5.31 0.09 -7.87 16 24 C 0.15 1.68 7.79 -156.35 -1.22 0.46 16 25 N -0.48 -4.06 8.47 -12.36 -0.10 -4.17 16 26 C 0.20 0.83 13.14 -90.48 -1.19 -0.36 16 27 N -0.40 -1.82 6.93 29.56 0.20 -1.61 16 28 H 0.45 0.06 8.96 -190.21 -1.71 -1.65 16 29 N -0.25 -2.46 12.30 32.07 0.39 -2.07 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.85 6.93 -51.93 -0.36 0.49 16 32 H 0.06 0.57 6.21 -51.93 -0.32 0.25 16 33 H 0.40 4.30 6.38 -40.82 -0.26 4.04 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.10 0.93 6.14 -51.93 -0.32 0.61 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.23 -0.24 8.06 -52.49 -0.42 -0.66 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -38.76 360.66 -9.90 -48.66 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.29 Total: -0.48 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.47 Total: 2.06 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.49 Total: -49.41 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.76 -9.90 -48.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701746891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.828 kcal (2) G-P(sol) polarization free energy of solvation -38.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds