Wall clock time and date at job start Tue Mar 31 2020 23:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99847 * 2 1 4 4 C 1.54323 * 109.88138 * 121.09198 * 2 1 3 5 5 H 1.09003 * 110.72279 * 260.14909 * 4 2 1 6 6 N 1.46506 * 110.72190 * 23.24691 * 4 2 1 7 7 C 1.34768 * 120.00142 * 202.55880 * 6 4 2 8 8 O 1.21279 * 120.00177 * 0.02562 * 7 6 4 9 9 C 1.50706 * 120.00164 * 179.97438 * 7 6 4 10 10 S 1.80994 * 109.47363 * 180.02562 * 9 7 6 11 11 C 1.76195 * 100.00323 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99420 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00618 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99497 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00327 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47207 * 59.99355 * 15 13 11 17 17 H 1.48498 * 109.47114 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46821 * 299.99610 * 15 13 11 19 19 C 1.55153 * 103.10236 * 141.69887 * 4 2 1 20 20 C 1.54915 * 101.58175 * 324.40929 * 19 4 2 21 21 N 1.47418 * 104.83062 * 37.01067 * 20 19 4 22 22 C 1.34774 * 125.64846 * 155.91573 * 21 20 19 23 23 O 1.21558 * 120.00102 * 179.97438 * 22 21 20 24 24 C 1.47864 * 120.00048 * 359.97019 * 22 21 20 25 25 N 1.34554 * 126.04838 * 359.69411 * 24 22 21 26 26 C 1.30873 * 107.26639 * 179.87018 * 25 24 22 27 27 N 1.34582 * 107.62769 * 0.38486 * 26 25 24 28 28 H 0.97000 * 125.74831 * 179.72493 * 27 26 25 29 29 N 1.28850 * 108.50526 * 359.75919 * 27 26 25 30 30 H 1.09002 * 109.47088 * 298.90998 * 1 2 3 31 31 H 1.09002 * 109.46749 * 58.90726 * 1 2 3 32 32 H 1.08991 * 109.47215 * 178.90757 * 1 2 3 33 33 H 0.97002 * 119.99472 * 22.55677 * 6 4 2 34 34 H 1.09000 * 109.46823 * 300.00381 * 9 7 6 35 35 H 1.09001 * 109.46865 * 60.00185 * 9 7 6 36 36 H 0.96997 * 119.99421 * 179.97438 * 14 13 11 37 37 H 1.09003 * 111.00505 * 82.48412 * 19 4 2 38 38 H 1.09001 * 111.00757 * 206.33495 * 19 4 2 39 39 H 1.09004 * 110.36209 * 155.84789 * 20 19 4 40 40 H 1.08998 * 110.36590 * 278.17045 * 20 19 4 41 41 H 1.08000 * 126.18037 * 180.12456 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.3500 -0.0460 2.0213 6 7 1.0471 -1.6854 1.7476 7 6 1.0898 -2.0938 3.0312 8 8 1.9621 -1.6862 3.7686 9 6 0.0529 -3.0562 3.5506 10 16 0.3775 -3.4089 5.2959 11 6 -0.9435 -4.5249 5.6336 12 1 -1.6427 -4.7859 4.8528 13 6 -1.0864 -5.0676 6.9030 14 7 -0.2345 -4.7490 7.8546 15 14 -2.4865 -6.2513 7.2607 16 1 -2.3708 -7.4371 6.3744 17 1 -2.4183 -6.6844 8.6795 18 1 -3.7839 -5.5726 7.0127 19 6 3.2897 -1.5140 0.6970 20 6 2.8201 -1.8832 -0.7324 21 7 2.0353 -0.7199 -1.1840 22 6 1.8149 -0.3712 -2.4671 23 8 1.1490 0.6127 -2.7238 24 6 2.3834 -1.1856 -3.5626 25 7 3.1394 -2.2893 -3.4185 26 6 3.4385 -2.7147 -4.6195 27 7 2.8751 -1.8702 -5.5031 28 1 2.9345 -1.9380 -6.4689 29 7 2.2442 -0.9561 -4.8500 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3633 -1.0274 -0.0196 33 1 0.3492 -2.0112 1.1578 34 1 -0.9377 -2.6132 3.4479 35 1 0.0977 -3.9826 2.9779 36 1 -0.3346 -5.1280 8.7419 37 1 4.1668 -0.8677 0.6653 38 1 3.4870 -2.4092 1.2868 39 1 3.6789 -2.0382 -1.3856 40 1 2.1952 -2.7759 -0.7077 41 1 4.0336 -3.5838 -4.8582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701746891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:46 Heat of formation + Delta-G solvation = 8.024128 kcal Electronic energy + Delta-G solvation = -26499.716376 eV Core-core repulsion = 22542.367071 eV Total energy + Delta-G solvation = -3957.349306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.46923 -41.66489 -40.30722 -38.59546 -35.35217 -34.56021 -34.44876 -32.64552 -32.33654 -32.03407 -30.12284 -27.65171 -26.76746 -26.09727 -23.87206 -23.43800 -22.52764 -21.19341 -20.52154 -19.85016 -19.48527 -18.20604 -18.01800 -17.61835 -17.37898 -16.85391 -16.80390 -16.47116 -16.23105 -15.75997 -15.61748 -15.05167 -14.88578 -14.53033 -14.40370 -14.35441 -14.10408 -13.67079 -13.33632 -13.22806 -13.13924 -12.85554 -12.64927 -12.61773 -12.46240 -12.24655 -11.99706 -11.74291 -11.70869 -11.45588 -11.30238 -11.10605 -10.91045 -10.81490 -10.24248 -10.11379 -9.80707 -8.62317 -8.32107 -6.09077 0.26834 1.14821 1.28377 1.37653 1.45132 1.48719 1.58361 1.65081 2.09403 2.19172 2.26637 2.31782 2.94640 3.01884 3.32851 3.35731 3.49716 3.63068 3.93912 3.98681 4.03892 4.14254 4.23956 4.31926 4.37012 4.55763 4.57499 4.67996 4.81290 4.90761 4.97295 5.04929 5.07014 5.15969 5.22668 5.36316 5.44339 5.50314 5.94919 6.22159 6.24782 6.48416 6.77976 7.07177 7.09416 7.25664 8.76617 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.002175 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.161475 B =12872.635736 C =13246.145797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.098 0.902 4 C 0.140 3.860 5 H 0.104 0.896 6 N -0.704 5.704 7 C 0.542 3.458 8 O -0.557 6.557 9 C -0.132 4.132 10 S -0.145 6.145 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.139 4.139 20 C 0.110 3.890 21 N -0.592 5.592 22 C 0.624 3.376 23 O -0.556 6.556 24 C 0.127 3.873 25 N -0.505 5.505 26 C 0.221 3.779 27 N -0.383 5.383 28 H 0.472 0.528 29 N -0.280 5.280 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.412 0.588 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.933 2.824 -30.302 31.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.116 0.884 4 C 0.034 3.966 5 H 0.122 0.878 6 N -0.360 5.360 7 C 0.328 3.672 8 O -0.434 6.434 9 C -0.283 4.283 10 S 0.082 5.918 11 C -0.695 4.695 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.178 4.178 20 C -0.012 4.012 21 N -0.326 5.326 22 C 0.409 3.591 23 O -0.432 6.432 24 C -0.153 4.153 25 N -0.232 5.232 26 C -0.075 4.075 27 N -0.108 5.108 28 H 0.323 0.677 29 N -0.121 5.121 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.251 0.749 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 8.778 4.457 -28.925 30.554 hybrid contribution -1.820 -1.387 -1.235 2.600 sum 6.958 3.071 -30.160 31.104 Atomic orbital electron populations 1.22043 0.93750 1.02667 1.03285 1.21954 0.95537 0.96567 0.82607 0.88423 1.21900 0.88487 0.91562 0.94627 0.87814 1.45888 1.32264 1.47446 1.10421 1.19934 0.84719 0.80634 0.81952 1.90700 1.37953 1.57146 1.57635 1.23383 1.01645 1.01934 1.01334 1.85520 1.41353 1.59633 1.05248 1.23174 1.15021 1.31267 1.00018 0.90047 1.26094 0.99719 0.98481 0.94819 1.70173 1.37425 1.43802 1.03266 0.85038 0.77693 0.78046 0.77442 1.18663 1.20451 1.18831 1.23231 0.97561 1.01879 0.95163 1.22610 0.96512 0.87007 0.95026 1.48369 1.51576 1.29117 1.03489 1.16117 0.79634 0.82710 0.80605 1.90805 1.41016 1.28017 1.83410 1.23398 1.03887 0.97124 0.90866 1.71367 1.15919 1.10404 1.25526 1.27702 0.98115 0.98628 0.83090 1.45271 1.35130 1.17539 1.12907 0.67747 1.74277 1.16827 1.14640 1.06397 0.90146 0.92152 0.91673 0.74914 0.87468 0.87298 0.92032 0.88344 0.89736 0.87223 0.90888 0.70074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.48 71.98 0.61 -2.54 16 2 C 0.14 2.70 3.45 45.25 0.16 2.86 16 3 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.14 2.97 3.13 46.18 0.14 3.11 16 5 H 0.10 2.47 7.62 -2.39 -0.02 2.46 16 6 N -0.70 -16.77 4.56 -436.92 -1.99 -18.76 16 7 C 0.54 18.67 7.85 87.66 0.69 19.36 16 8 O -0.56 -24.03 15.55 -3.03 -0.05 -24.07 16 9 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 10 S -0.14 -7.86 20.57 -56.49 -1.16 -9.02 16 11 C -0.55 -30.87 9.50 67.95 0.65 -30.22 16 12 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 13 C 0.01 0.78 5.49 84.86 0.47 1.24 16 14 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 15 Si 1.00 43.32 29.55 68.60 2.03 45.34 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 C -0.14 -2.58 6.77 31.99 0.22 -2.36 16 20 C 0.11 1.90 6.12 86.86 0.53 2.43 16 21 N -0.59 -12.17 3.08 -790.29 -2.43 -14.61 16 22 C 0.62 15.68 7.66 86.79 0.66 16.35 16 23 O -0.56 -17.54 16.15 -3.90 -0.06 -17.60 16 24 C 0.13 2.67 7.79 137.12 1.07 3.74 16 25 N -0.50 -7.42 8.47 -193.03 -1.63 -9.06 16 26 C 0.22 1.07 13.14 180.30 2.37 3.44 16 27 N -0.38 -2.51 6.93 -60.38 -0.42 -2.93 16 28 H 0.47 -1.21 8.96 -219.80 -1.97 -3.18 16 29 N -0.28 -5.24 12.30 -52.43 -0.65 -5.88 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.40 6.93 -2.39 -0.02 1.38 16 32 H 0.06 1.17 6.21 -2.39 -0.01 1.16 16 33 H 0.41 8.00 6.38 -92.71 -0.59 7.41 16 34 H 0.11 3.72 8.14 -2.40 -0.02 3.71 16 35 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 1.79 6.14 -2.38 -0.01 1.78 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.28 -2.11 8.06 -2.91 -0.02 -2.13 16 Total: -1.00 -87.77 360.66 0.46 -87.32 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -1.46 Total: 11.66 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 8.00 Total: 12.81 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -6.84 Total: -106.43 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.11 Total: -41.68 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -87.77 0.46 -87.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701746891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.342 kcal (2) G-P(sol) polarization free energy of solvation -87.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds