Wall clock time and date at job start Tue Mar 31 2020 23:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99944 * 2 1 4 4 C 1.54320 * 109.88133 * 238.90460 * 2 1 3 5 5 H 1.09005 * 110.71901 * 144.24045 * 4 2 1 6 6 N 1.46498 * 110.72325 * 21.14081 * 4 2 1 7 7 C 1.34778 * 120.00087 * 154.99998 * 6 4 2 8 8 O 1.21277 * 119.99937 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99912 * 180.02562 * 7 6 4 10 10 S 1.80995 * 109.46964 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00209 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99581 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00399 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99990 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00129 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46973 * 59.99756 * 15 13 11 17 17 H 1.48495 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46996 * 299.99723 * 15 13 11 19 19 C 1.55160 * 102.94573 * 262.77636 * 4 2 1 20 20 C 1.55131 * 101.48323 * 324.33520 * 19 4 2 21 21 N 1.47028 * 109.88051 * 121.10083 * 2 1 3 22 22 C 1.34779 * 125.64480 * 300.43971 * 21 2 1 23 23 O 1.21552 * 120.00117 * 359.97438 * 22 21 2 24 24 C 1.47870 * 120.00058 * 180.02562 * 22 21 2 25 25 N 1.34552 * 126.04709 * 359.97438 * 24 22 21 26 26 C 1.30868 * 107.26947 * 180.02562 * 25 24 22 27 27 N 1.34584 * 107.62357 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.74213 * 180.02562 * 27 26 25 29 29 N 1.28842 * 108.50460 * 359.97438 * 27 26 25 30 30 H 1.08999 * 109.47112 * 300.35677 * 1 2 3 31 31 H 1.08996 * 109.46960 * 60.35583 * 1 2 3 32 32 H 1.09005 * 109.46921 * 180.35364 * 1 2 3 33 33 H 0.96999 * 119.99649 * 335.00063 * 6 4 2 34 34 H 1.08997 * 109.47128 * 300.00028 * 9 7 6 35 35 H 1.08995 * 109.47056 * 59.99702 * 9 7 6 36 36 H 0.97001 * 120.00005 * 179.97438 * 14 13 11 37 37 H 1.08997 * 111.00673 * 82.57018 * 19 4 2 38 38 H 1.08994 * 111.00778 * 206.38961 * 19 4 2 39 39 H 1.09003 * 110.50216 * 278.45038 * 20 19 4 40 40 H 1.08999 * 110.34404 * 156.05500 * 20 19 4 41 41 H 1.08002 * 126.18380 * 180.26165 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9640 -0.2813 -1.6200 6 7 1.0293 -0.8026 -2.2875 7 6 1.3896 -0.9366 -3.5793 8 8 2.5629 -1.0128 -3.8768 9 6 0.3347 -0.9906 -4.6541 10 16 1.1289 -1.1721 -6.2704 11 6 -0.2943 -1.2064 -7.3086 12 1 -1.2805 -1.1253 -6.8757 13 6 -0.1482 -1.3387 -8.6825 14 7 1.0537 -1.4380 -9.2099 15 14 -1.6572 -1.3759 -9.7830 16 1 -2.4176 -0.1103 -9.6233 17 1 -1.2338 -1.5231 -11.1987 18 1 -2.5196 -2.5231 -9.4019 19 6 2.3518 -2.1695 -0.6925 20 6 2.8613 -1.8466 0.7368 21 7 2.0300 -0.7142 1.1839 22 6 1.7753 -0.3846 2.4657 23 8 1.0776 0.5781 2.7186 24 6 2.3454 -1.1935 3.5644 25 7 3.1299 -2.2777 3.4247 26 6 3.4217 -2.7037 4.6272 27 7 2.8177 -1.8842 5.5075 28 1 2.8602 -1.9602 6.4736 29 7 2.1748 -0.9812 4.8509 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0277 0.0063 33 1 0.0910 -0.7412 -2.0496 34 1 -0.3235 -1.8407 -4.4748 35 1 -0.2484 -0.0698 -4.6375 36 1 1.1558 -1.5309 -10.1701 37 1 1.4452 -2.7737 -0.6604 38 1 3.1265 -2.6621 -1.2800 39 1 3.9123 -1.5589 0.7116 40 1 2.7177 -2.7049 1.3932 41 1 4.0389 -3.5563 4.8694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701746892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:50 Heat of formation + Delta-G solvation = 37.293101 kcal Electronic energy + Delta-G solvation = -26253.443931 eV Core-core repulsion = 22297.363823 eV Total energy + Delta-G solvation = -3956.080108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.97162 -40.67010 -39.12153 -37.55156 -34.55180 -33.80152 -32.42004 -31.96422 -31.38672 -30.96153 -28.81394 -25.91561 -25.52145 -25.21387 -23.44523 -22.78968 -21.30281 -20.19231 -19.75319 -18.95072 -17.97702 -17.32176 -16.92190 -16.58271 -16.34490 -16.13872 -15.33156 -15.25439 -14.84133 -14.79062 -14.36951 -13.96962 -13.79925 -13.42032 -13.21366 -12.84759 -12.81156 -12.56981 -12.44883 -12.21668 -12.05630 -11.75460 -11.28113 -11.14361 -11.06571 -11.03227 -11.02770 -10.77072 -10.71951 -10.43638 -10.25307 -9.81761 -9.42318 -9.05680 -8.99323 -8.88381 -8.23573 -6.49141 -6.20703 -3.91265 0.91884 1.60456 1.95077 2.53319 2.97236 3.05526 3.05821 3.24562 3.28591 3.32065 3.54460 3.72393 4.01610 4.21281 4.22123 4.33978 4.49054 4.81067 4.97937 5.07584 5.08873 5.14429 5.17578 5.32584 5.35778 5.52727 5.59445 5.68522 5.74060 5.80350 5.85642 5.89506 5.96830 5.98976 6.14296 6.14819 6.21359 6.59921 7.07661 7.40971 7.60250 7.66635 7.81095 8.35954 8.58641 9.24616 10.86611 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035587 B = 0.001931 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.616249 B =14498.658188 C =14878.532622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.133 3.867 3 H 0.089 0.911 4 C 0.141 3.859 5 H 0.109 0.891 6 N -0.731 5.731 7 C 0.534 3.466 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.146 4.146 20 C 0.101 3.899 21 N -0.594 5.594 22 C 0.630 3.370 23 O -0.516 6.516 24 C 0.153 3.847 25 N -0.481 5.481 26 C 0.198 3.802 27 N -0.400 5.400 28 H 0.453 0.547 29 N -0.249 5.249 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.401 0.599 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -3.819 30.848 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.030 3.970 3 H 0.107 0.893 4 C 0.034 3.966 5 H 0.127 0.873 6 N -0.388 5.388 7 C 0.321 3.679 8 O -0.389 6.389 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.186 4.186 20 C -0.021 4.021 21 N -0.328 5.328 22 C 0.414 3.586 23 O -0.388 6.388 24 C -0.127 4.127 25 N -0.207 5.207 26 C -0.099 4.099 27 N -0.123 5.123 28 H 0.300 0.700 29 N -0.088 5.088 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.050 -2.988 30.146 30.712 hybrid contribution -2.457 -0.342 0.587 2.549 sum 2.593 -3.330 30.732 31.021 Atomic orbital electron populations 1.22185 0.94328 1.02886 1.03771 1.21742 0.95377 0.96389 0.83525 0.89349 1.21841 0.92822 0.95661 0.86260 0.87321 1.46209 1.09788 1.77056 1.05766 1.20340 0.90233 0.74902 0.82463 1.90699 1.18998 1.47348 1.81817 1.23537 1.01020 1.05026 1.00896 1.85380 1.11060 1.95661 0.91081 1.22831 0.93381 1.58404 0.93840 0.90966 1.24985 0.96901 0.94542 0.97128 1.70005 1.21459 1.46305 1.12518 0.86229 0.81626 0.78789 0.78885 1.19942 1.20828 1.19950 1.23330 1.02948 0.97338 0.94956 1.22665 0.94558 0.89570 0.95314 1.48103 1.50021 1.30974 1.03747 1.15786 0.80229 0.82817 0.79795 1.90840 1.37841 1.27378 1.82788 1.23686 1.01625 0.96370 0.91048 1.71423 1.15401 1.10806 1.23087 1.26730 0.99634 0.98921 0.84636 1.45283 1.35164 1.20001 1.11887 0.70003 1.74379 1.15718 1.12543 1.06171 0.90329 0.90666 0.91878 0.76089 0.89174 0.89149 0.92134 0.90162 0.88812 0.90701 0.87873 0.75269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 7.93 37.16 0.29 -1.42 16 2 C 0.13 1.41 3.48 -66.95 -0.23 1.18 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.14 1.61 3.19 -66.10 -0.21 1.40 16 5 H 0.11 1.39 7.55 -51.93 -0.39 1.00 16 6 N -0.73 -9.34 4.89 -52.03 -0.25 -9.60 16 7 C 0.53 9.52 7.85 -10.98 -0.09 9.44 16 8 O -0.51 -11.12 15.51 5.56 0.09 -11.04 16 9 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 11 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 15 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.15 -1.46 6.78 -24.46 -0.17 -1.63 16 20 C 0.10 0.93 6.15 -2.41 -0.01 0.91 16 21 N -0.59 -6.39 3.08 -163.97 -0.50 -6.90 16 22 C 0.63 7.92 7.64 -12.32 -0.09 7.82 16 23 O -0.52 -7.92 15.98 5.32 0.09 -7.84 16 24 C 0.15 1.65 7.79 -156.35 -1.22 0.43 16 25 N -0.48 -3.89 8.46 -12.36 -0.10 -3.99 16 26 C 0.20 0.75 13.14 -90.48 -1.19 -0.44 16 27 N -0.40 -1.69 6.93 29.56 0.20 -1.49 16 28 H 0.45 -0.09 8.96 -190.21 -1.71 -1.79 16 29 N -0.25 -2.39 12.30 32.07 0.39 -2.00 16 30 H 0.08 0.90 6.74 -51.93 -0.35 0.55 16 31 H 0.07 0.66 6.82 -51.93 -0.35 0.31 16 32 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 33 H 0.40 4.21 5.87 -40.82 -0.24 3.97 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.91 6.13 -51.93 -0.32 0.59 16 41 H 0.23 -0.34 8.06 -52.49 -0.42 -0.76 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -39.06 360.02 -9.95 -49.00 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.28 Total: -0.82 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.50 Total: 2.00 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.47 Total: -49.27 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.17 Total: -18.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -39.06 -9.95 -49.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701746892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.294 kcal (2) G-P(sol) polarization free energy of solvation -39.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds