Wall clock time and date at job start Tue Mar 31 2020 23:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99944 * 2 1 4 4 C 1.54320 * 109.88133 * 238.90460 * 2 1 3 5 5 H 1.09005 * 110.71901 * 144.24045 * 4 2 1 6 6 N 1.46498 * 110.72325 * 21.14081 * 4 2 1 7 7 C 1.34778 * 120.00087 * 154.99998 * 6 4 2 8 8 O 1.21277 * 119.99937 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99912 * 180.02562 * 7 6 4 10 10 S 1.80995 * 109.46964 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00209 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99581 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00399 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99990 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00129 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46973 * 59.99756 * 15 13 11 17 17 H 1.48495 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46996 * 299.99723 * 15 13 11 19 19 C 1.55160 * 102.94573 * 262.77636 * 4 2 1 20 20 C 1.55131 * 101.48323 * 324.33520 * 19 4 2 21 21 N 1.47028 * 109.88051 * 121.10083 * 2 1 3 22 22 C 1.34779 * 125.64480 * 300.43971 * 21 2 1 23 23 O 1.21552 * 120.00117 * 359.97438 * 22 21 2 24 24 C 1.47870 * 120.00058 * 180.02562 * 22 21 2 25 25 N 1.34552 * 126.04709 * 359.97438 * 24 22 21 26 26 C 1.30868 * 107.26947 * 180.02562 * 25 24 22 27 27 N 1.34584 * 107.62357 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.74213 * 180.02562 * 27 26 25 29 29 N 1.28842 * 108.50460 * 359.97438 * 27 26 25 30 30 H 1.08999 * 109.47112 * 300.35677 * 1 2 3 31 31 H 1.08996 * 109.46960 * 60.35583 * 1 2 3 32 32 H 1.09005 * 109.46921 * 180.35364 * 1 2 3 33 33 H 0.96999 * 119.99649 * 335.00063 * 6 4 2 34 34 H 1.08997 * 109.47128 * 300.00028 * 9 7 6 35 35 H 1.08995 * 109.47056 * 59.99702 * 9 7 6 36 36 H 0.97001 * 120.00005 * 179.97438 * 14 13 11 37 37 H 1.08997 * 111.00673 * 82.57018 * 19 4 2 38 38 H 1.08994 * 111.00778 * 206.38961 * 19 4 2 39 39 H 1.09003 * 110.50216 * 278.45038 * 20 19 4 40 40 H 1.08999 * 110.34404 * 156.05500 * 20 19 4 41 41 H 1.08002 * 126.18380 * 180.26165 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9640 -0.2813 -1.6200 6 7 1.0293 -0.8026 -2.2875 7 6 1.3896 -0.9366 -3.5793 8 8 2.5629 -1.0128 -3.8768 9 6 0.3347 -0.9906 -4.6541 10 16 1.1289 -1.1721 -6.2704 11 6 -0.2943 -1.2064 -7.3086 12 1 -1.2805 -1.1253 -6.8757 13 6 -0.1482 -1.3387 -8.6825 14 7 1.0537 -1.4380 -9.2099 15 14 -1.6572 -1.3759 -9.7830 16 1 -2.4176 -0.1103 -9.6233 17 1 -1.2338 -1.5231 -11.1987 18 1 -2.5196 -2.5231 -9.4019 19 6 2.3518 -2.1695 -0.6925 20 6 2.8613 -1.8466 0.7368 21 7 2.0300 -0.7142 1.1839 22 6 1.7753 -0.3846 2.4657 23 8 1.0776 0.5781 2.7186 24 6 2.3454 -1.1935 3.5644 25 7 3.1299 -2.2777 3.4247 26 6 3.4217 -2.7037 4.6272 27 7 2.8177 -1.8842 5.5075 28 1 2.8602 -1.9602 6.4736 29 7 2.1748 -0.9812 4.8509 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0277 0.0063 33 1 0.0910 -0.7412 -2.0496 34 1 -0.3235 -1.8407 -4.4748 35 1 -0.2484 -0.0698 -4.6375 36 1 1.1558 -1.5309 -10.1701 37 1 1.4452 -2.7737 -0.6604 38 1 3.1265 -2.6621 -1.2800 39 1 3.9123 -1.5589 0.7116 40 1 2.7177 -2.7049 1.3932 41 1 4.0389 -3.5563 4.8694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701746892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:49 Heat of formation + Delta-G solvation = 8.692577 kcal Electronic energy + Delta-G solvation = -26254.684143 eV Core-core repulsion = 22297.363823 eV Total energy + Delta-G solvation = -3957.320320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.47513 -41.64948 -40.37021 -38.63617 -35.55809 -34.56215 -34.49844 -32.60373 -32.24599 -32.01853 -30.17178 -27.65746 -26.74872 -26.09821 -23.89178 -23.56023 -22.43493 -21.19039 -20.53321 -19.86604 -19.58151 -18.29967 -17.82170 -17.58174 -17.22363 -17.14335 -16.85135 -16.40334 -16.30988 -15.81628 -15.65489 -15.24227 -14.82555 -14.73001 -14.42352 -14.17408 -13.80888 -13.61671 -13.31652 -13.28012 -13.14429 -12.96892 -12.85289 -12.72278 -12.60087 -12.10755 -11.90345 -11.73041 -11.72099 -11.44046 -11.33233 -11.10522 -10.93359 -10.81833 -10.24519 -10.11348 -9.82527 -8.62677 -8.32038 -6.09256 0.25963 1.14725 1.23326 1.35716 1.45470 1.49859 1.59453 1.62804 2.06234 2.18078 2.28922 2.34397 2.93657 3.02014 3.31898 3.35222 3.51161 3.62020 3.90508 3.97378 4.04323 4.12275 4.26053 4.27510 4.35385 4.51223 4.55549 4.67788 4.78023 4.87488 4.96581 5.00610 5.09805 5.15662 5.25974 5.34996 5.44524 5.46348 5.95074 6.22265 6.23180 6.47106 6.76868 7.06395 7.09466 7.23833 8.76703 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035587 B = 0.001931 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.616249 B =14498.658188 C =14878.532622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H 0.083 0.917 4 C 0.141 3.859 5 H 0.095 0.905 6 N -0.706 5.706 7 C 0.540 3.460 8 O -0.558 6.558 9 C -0.132 4.132 10 S -0.146 6.146 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.262 1.262 19 C -0.139 4.139 20 C 0.111 3.889 21 N -0.591 5.591 22 C 0.624 3.376 23 O -0.556 6.556 24 C 0.126 3.874 25 N -0.505 5.505 26 C 0.222 3.778 27 N -0.383 5.383 28 H 0.472 0.528 29 N -0.279 5.279 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.416 0.584 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -5.159 32.630 33.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.101 0.899 4 C 0.035 3.965 5 H 0.113 0.887 6 N -0.362 5.362 7 C 0.326 3.674 8 O -0.435 6.435 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.178 4.178 20 C -0.011 4.011 21 N -0.324 5.324 22 C 0.410 3.590 23 O -0.432 6.432 24 C -0.153 4.153 25 N -0.232 5.232 26 C -0.074 4.074 27 N -0.108 5.108 28 H 0.323 0.677 29 N -0.121 5.121 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.257 0.743 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 3.983 -4.346 32.000 32.539 hybrid contribution -2.058 0.035 0.257 2.074 sum 1.925 -4.311 32.257 32.601 Atomic orbital electron populations 1.22136 0.93525 1.03385 1.03630 1.21676 0.95974 0.95990 0.83182 0.89894 1.21868 0.91817 0.96956 0.85847 0.88680 1.45919 1.11009 1.75007 1.04300 1.20011 0.89019 0.74860 0.83527 1.90695 1.20430 1.49757 1.82623 1.23386 1.01157 1.06835 0.96926 1.85536 1.13816 1.96045 0.96503 1.23185 0.93679 1.58187 0.94467 0.89932 1.26097 1.00326 0.93834 0.98851 1.70170 1.24095 1.47510 1.12908 0.85034 0.77283 0.79424 0.76442 1.18795 1.20468 1.18664 1.23273 1.03202 0.96122 0.95215 1.22673 0.94464 0.89363 0.94620 1.48124 1.49803 1.31092 1.03413 1.16122 0.79766 0.82591 0.80527 1.90801 1.39736 1.29163 1.83489 1.23342 1.03431 0.97678 0.90851 1.71353 1.15880 1.10466 1.25482 1.27718 0.97875 0.98742 0.83091 1.45273 1.33864 1.18789 1.12914 0.67712 1.74270 1.17082 1.14475 1.06243 0.91823 0.89441 0.90989 0.74347 0.87086 0.87232 0.92032 0.89442 0.89182 0.90188 0.86924 0.69955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 7.93 71.98 0.57 -2.60 16 2 C 0.14 2.80 3.48 45.34 0.16 2.96 16 3 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.14 3.11 3.19 46.18 0.15 3.26 16 5 H 0.10 2.44 7.55 -2.38 -0.02 2.43 16 6 N -0.71 -17.01 4.89 -436.92 -2.14 -19.15 16 7 C 0.54 18.87 7.85 87.66 0.69 19.56 16 8 O -0.56 -24.41 15.51 -3.02 -0.05 -24.46 16 9 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 10 S -0.15 -7.96 20.57 -56.49 -1.16 -9.13 16 11 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 12 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.59 13.22 21.65 0.29 -55.31 16 15 Si 1.00 43.39 29.55 68.60 2.03 45.41 16 16 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 C -0.14 -2.60 6.78 32.06 0.22 -2.39 16 20 C 0.11 1.89 6.15 86.93 0.54 2.42 16 21 N -0.59 -12.47 3.08 -790.96 -2.44 -14.90 16 22 C 0.62 15.83 7.64 86.79 0.66 16.49 16 23 O -0.56 -17.65 15.98 -3.88 -0.06 -17.71 16 24 C 0.13 2.64 7.79 137.13 1.07 3.71 16 25 N -0.50 -7.14 8.46 -193.03 -1.63 -8.78 16 26 C 0.22 0.92 13.14 180.30 2.37 3.29 16 27 N -0.38 -2.31 6.93 -60.38 -0.42 -2.73 16 28 H 0.47 -1.47 8.96 -219.80 -1.97 -3.44 16 29 N -0.28 -5.13 12.30 -52.44 -0.64 -5.78 16 30 H 0.06 1.45 6.74 -2.39 -0.02 1.43 16 31 H 0.09 1.39 6.82 -2.39 -0.02 1.37 16 32 H 0.07 1.22 8.01 -2.38 -0.02 1.20 16 33 H 0.42 7.74 5.87 -92.71 -0.54 7.19 16 34 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 35 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 1.78 6.13 -2.39 -0.01 1.77 16 41 H 0.29 -2.37 8.06 -2.91 -0.02 -2.39 16 Total: -1.00 -88.86 360.02 0.33 -88.53 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -1.41 Total: 10.94 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 7.97 Total: 13.06 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -6.98 Total: -106.65 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.11 Total: -42.17 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.13 kcal Total: -88.86 0.33 -88.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701746892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.225 kcal (2) G-P(sol) polarization free energy of solvation -88.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds