Wall clock time and date at job start Tue Mar 31 2020 23:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.32661 * 2 1 4 4 C 1.54907 * 110.46080 * 237.70676 * 2 1 3 5 5 C 1.55151 * 101.58537 * 204.10424 * 4 2 1 6 6 H 1.09002 * 110.72113 * 276.96230 * 5 4 2 7 7 N 1.46499 * 110.72200 * 153.86433 * 5 4 2 8 8 C 1.34779 * 119.99929 * 155.00435 * 7 5 4 9 9 O 1.21554 * 120.00095 * 359.97438 * 8 7 5 10 10 C 1.47873 * 120.00140 * 180.02562 * 8 7 5 11 11 N 1.34543 * 126.05012 * 179.97438 * 10 8 7 12 12 C 1.30870 * 107.26954 * 179.97438 * 11 10 8 13 13 N 1.34580 * 107.62354 * 359.97438 * 12 11 10 14 14 H 0.97001 * 125.74655 * 179.97438 * 13 12 11 15 15 N 1.28841 * 108.50670 * 359.73380 * 13 12 11 16 16 C 1.54335 * 103.01956 * 35.30524 * 5 4 2 17 17 N 1.47026 * 107.26563 * 338.14341 * 16 5 4 18 18 C 1.34778 * 125.64713 * 178.85278 * 17 16 5 19 19 O 1.21283 * 119.99681 * 179.69188 * 18 17 16 20 20 C 1.50696 * 119.99844 * 359.68465 * 18 17 16 21 21 S 1.81002 * 109.46649 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99815 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00460 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99941 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00247 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99893 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 90.00333 * 26 24 22 28 28 H 1.48503 * 109.47399 * 209.99822 * 26 24 22 29 29 H 1.48498 * 109.47295 * 330.00429 * 26 24 22 30 30 H 1.08997 * 109.47091 * 299.21228 * 1 2 3 31 31 H 1.08996 * 109.47262 * 59.21132 * 1 2 3 32 32 H 1.08996 * 109.46990 * 179.21112 * 1 2 3 33 33 H 1.09002 * 111.00521 * 322.18200 * 4 2 1 34 34 H 1.09003 * 111.00432 * 85.98712 * 4 2 1 35 35 H 0.96995 * 120.00558 * 334.99758 * 7 5 4 36 36 H 1.08007 * 126.18236 * 180.02562 * 12 11 10 37 37 H 1.08997 * 109.99189 * 218.66727 * 16 5 4 38 38 H 1.09000 * 109.77884 * 97.49512 * 16 5 4 39 39 H 1.09006 * 109.46936 * 60.00912 * 20 18 17 40 40 H 1.08998 * 109.47807 * 300.00056 * 20 18 17 41 41 H 0.97000 * 119.99573 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7754 -1.2269 5 6 3.4803 -1.1970 -0.7320 6 1 4.1966 -0.3874 -0.8724 7 7 3.9300 -2.4096 -1.4201 8 6 5.2475 -2.6669 -1.5403 9 8 6.0626 -1.8926 -1.0782 10 6 5.7015 -3.8906 -2.2354 11 7 6.9796 -4.2657 -2.4247 12 6 6.9591 -5.3998 -3.0774 13 7 5.6704 -5.7243 -3.2900 14 1 5.3543 -6.5163 -3.7522 15 7 4.9272 -4.8084 -2.7716 16 6 3.2540 -1.4696 0.7701 17 7 2.0431 -0.7373 1.1690 18 6 1.4961 -0.7357 2.4008 19 8 0.4944 -0.0876 2.6185 20 6 2.1292 -1.5392 3.5073 21 16 1.1686 -1.3337 5.0276 22 6 2.1053 -2.3494 6.1210 23 1 2.9844 -2.8632 5.7609 24 6 1.7135 -2.4891 7.4452 25 7 0.6419 -1.8633 7.8841 26 14 2.7063 -3.5664 8.6043 27 1 3.7578 -2.7490 9.2611 28 1 1.8079 -4.1405 9.6380 29 1 3.3424 -4.6660 7.8352 30 1 -0.3633 0.5015 0.8969 31 1 -0.3633 0.5260 -0.8828 32 1 -0.3633 -1.0275 -0.0141 33 1 1.4550 -1.6485 -1.4405 34 1 2.1414 -0.1262 -2.0997 35 1 3.2796 -3.0273 -1.7892 36 1 7.8206 -5.9722 -3.3884 37 1 4.1085 -1.1146 1.3461 38 1 3.1119 -2.5378 0.9338 39 1 3.1490 -1.1909 3.6716 40 1 2.1456 -2.5927 3.2279 41 1 0.1262 -1.3042 7.2821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701748180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:24 Heat of formation + Delta-G solvation = 23.407225 kcal Electronic energy + Delta-G solvation = -26260.721839 eV Core-core repulsion = 22304.039594 eV Total energy + Delta-G solvation = -3956.682245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.99116 -40.56493 -39.42716 -37.36713 -34.66402 -33.92830 -32.50786 -32.31075 -32.15767 -30.05053 -28.77855 -25.99585 -25.32915 -24.80891 -23.52098 -22.52813 -21.42472 -20.89854 -19.44759 -19.02568 -18.13526 -17.89607 -17.01923 -16.80635 -16.70935 -15.89575 -15.34247 -15.23070 -14.90086 -14.51230 -14.39382 -13.85901 -13.77342 -13.75570 -13.22516 -12.90904 -12.75787 -12.43060 -12.35202 -12.23690 -12.08140 -11.78426 -11.72448 -11.28649 -11.24267 -11.09507 -11.01108 -10.88880 -10.59900 -10.28521 -10.17220 -9.67021 -9.55299 -9.19951 -8.99016 -8.57866 -8.20235 -6.64948 -6.60281 -3.97730 0.82245 1.62169 2.03233 2.38960 2.83011 2.93241 2.97832 3.34839 3.40986 3.46564 3.58358 3.73540 3.94054 4.10138 4.25129 4.28299 4.37893 4.65927 4.85565 4.94011 5.03336 5.24373 5.27087 5.37632 5.39583 5.46732 5.48346 5.58319 5.59852 5.65930 5.69587 5.81040 6.01142 6.04866 6.05922 6.14259 6.24350 6.58494 6.92486 7.44062 7.58340 7.73826 7.95462 8.48327 8.52456 9.29156 10.83818 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.002730 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.983009 B =10255.425705 C =12378.839621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.137 3.863 6 H 0.113 0.887 7 N -0.704 5.704 8 C 0.616 3.384 9 O -0.501 6.501 10 C 0.152 3.848 11 N -0.460 5.460 12 C 0.199 3.801 13 N -0.397 5.397 14 H 0.453 0.547 15 N -0.275 5.275 16 C 0.090 3.910 17 N -0.621 5.621 18 C 0.552 3.448 19 O -0.511 6.511 20 C -0.126 4.126 21 S -0.116 6.116 22 C -0.606 4.606 23 H 0.066 0.934 24 C 0.035 3.965 25 N -0.885 5.885 26 Si 1.087 2.913 27 H -0.284 1.284 28 H -0.280 1.280 29 H -0.287 1.287 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.410 0.590 36 H 0.233 0.767 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 -7.453 -29.416 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.173 4.173 5 C 0.032 3.968 6 H 0.131 0.869 7 N -0.358 5.358 8 C 0.398 3.602 9 O -0.371 6.371 10 C -0.129 4.129 11 N -0.185 5.185 12 C -0.099 4.099 13 N -0.120 5.120 14 H 0.300 0.700 15 N -0.117 5.117 16 C -0.035 4.035 17 N -0.359 5.359 18 C 0.340 3.660 19 O -0.385 6.385 20 C -0.277 4.277 21 S 0.111 5.889 22 C -0.754 4.754 23 H 0.084 0.916 24 C -0.175 4.175 25 N -0.519 5.519 26 Si 0.913 3.087 27 H -0.210 1.210 28 H -0.205 1.205 29 H -0.213 1.213 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.246 0.754 36 H 0.249 0.751 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.749 -6.066 -26.880 28.624 hybrid contribution 1.155 -1.603 -2.491 3.180 sum 8.904 -7.669 -29.371 31.635 Atomic orbital electron populations 1.22175 0.93366 1.02878 1.03879 1.21814 0.95782 0.95490 0.83423 0.90372 1.23198 0.94393 1.01502 0.98245 1.22022 0.96887 0.87247 0.90681 0.86869 1.45649 1.06369 1.25408 1.58334 1.16299 0.82722 0.82461 0.78767 1.90879 1.53229 1.46397 1.46610 1.23785 0.87155 0.97680 1.04260 1.71332 1.20621 1.10624 1.15873 1.26802 0.89418 0.94901 0.98762 1.45137 1.05873 1.20034 1.40962 0.70019 1.74243 1.23557 1.00272 1.13666 1.22404 0.88416 0.97687 0.95009 1.48481 1.28063 1.49939 1.09445 1.19926 0.83653 0.81243 0.81145 1.90644 1.24486 1.42525 1.80846 1.23319 1.04045 1.02000 0.98342 1.84761 1.38229 1.65473 1.00466 1.23729 1.16540 1.35965 0.99187 0.91613 1.26050 0.97243 0.98128 0.96097 1.70768 1.14974 1.27151 1.39035 0.83293 0.75075 0.75286 0.75056 1.21016 1.20522 1.21318 0.88914 0.92220 0.92586 0.89662 0.88925 0.75368 0.75123 0.90268 0.90843 0.89010 0.89194 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 8.71 37.16 0.32 -1.68 16 2 C 0.14 1.57 3.76 -66.42 -0.25 1.32 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.04 6.14 -24.59 -0.15 -1.19 16 5 C 0.14 1.27 3.31 -66.09 -0.22 1.05 16 6 H 0.11 1.11 7.55 -51.93 -0.39 0.72 16 7 N -0.70 -6.19 5.11 -52.96 -0.27 -6.46 16 8 C 0.62 7.18 7.83 -12.32 -0.10 7.09 16 9 O -0.50 -7.64 16.74 5.32 0.09 -7.55 16 10 C 0.15 1.59 7.96 -156.35 -1.24 0.34 16 11 N -0.46 -4.73 11.41 -12.36 -0.14 -4.87 16 12 C 0.20 0.92 13.14 -90.49 -1.19 -0.27 16 13 N -0.40 -1.50 6.93 29.57 0.20 -1.29 16 14 H 0.45 -0.30 8.96 -190.22 -1.71 -2.00 16 15 N -0.28 -2.10 11.98 32.07 0.38 -1.71 16 16 C 0.09 1.08 6.25 -3.06 -0.02 1.06 16 17 N -0.62 -8.94 3.24 -163.04 -0.53 -9.47 16 18 C 0.55 10.62 7.65 -10.99 -0.08 10.53 16 19 O -0.51 -11.36 13.52 5.55 0.08 -11.28 16 20 C -0.13 -2.68 5.35 36.00 0.19 -2.49 16 21 S -0.12 -3.17 19.60 -107.50 -2.11 -5.28 16 22 C -0.61 -17.83 9.50 30.94 0.29 -17.53 16 23 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 24 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 25 N -0.88 -27.87 13.67 55.49 0.76 -27.11 16 26 Si 1.09 25.48 29.92 -169.99 -5.09 20.39 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.09 1.46 5.89 -51.93 -0.31 1.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 2.81 8.26 -40.82 -0.34 2.47 16 36 H 0.23 -0.15 8.06 -52.48 -0.42 -0.57 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.88 8.03 -51.93 -0.42 0.47 16 39 H 0.09 1.87 8.14 -51.91 -0.42 1.45 16 40 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 41 H 0.28 8.93 7.12 -40.82 -0.29 8.64 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -40.94 365.10 -10.10 -51.04 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.45 Total: -1.09 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.54 Total: -0.82 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.41 Total: -50.91 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.16 Total: -18.83 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.09 Total: 20.39 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.11 Total: -5.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -40.94 -10.10 -51.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.452 kcal (2) G-P(sol) polarization free energy of solvation -40.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds