Wall clock time and date at job start Tue Mar 31 2020 23:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.32661 * 2 1 4 4 C 1.54907 * 110.46080 * 237.70676 * 2 1 3 5 5 C 1.55151 * 101.58537 * 204.10424 * 4 2 1 6 6 H 1.09002 * 110.72113 * 276.96230 * 5 4 2 7 7 N 1.46499 * 110.72200 * 153.86433 * 5 4 2 8 8 C 1.34779 * 119.99929 * 155.00435 * 7 5 4 9 9 O 1.21554 * 120.00095 * 359.97438 * 8 7 5 10 10 C 1.47873 * 120.00140 * 180.02562 * 8 7 5 11 11 N 1.34543 * 126.05012 * 179.97438 * 10 8 7 12 12 C 1.30870 * 107.26954 * 179.97438 * 11 10 8 13 13 N 1.34580 * 107.62354 * 359.97438 * 12 11 10 14 14 H 0.97001 * 125.74655 * 179.97438 * 13 12 11 15 15 N 1.28841 * 108.50670 * 359.73380 * 13 12 11 16 16 C 1.54335 * 103.01956 * 35.30524 * 5 4 2 17 17 N 1.47026 * 107.26563 * 338.14341 * 16 5 4 18 18 C 1.34778 * 125.64713 * 178.85278 * 17 16 5 19 19 O 1.21283 * 119.99681 * 179.69188 * 18 17 16 20 20 C 1.50696 * 119.99844 * 359.68465 * 18 17 16 21 21 S 1.81002 * 109.46649 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99815 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00460 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99941 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00247 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99893 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 90.00333 * 26 24 22 28 28 H 1.48503 * 109.47399 * 209.99822 * 26 24 22 29 29 H 1.48498 * 109.47295 * 330.00429 * 26 24 22 30 30 H 1.08997 * 109.47091 * 299.21228 * 1 2 3 31 31 H 1.08996 * 109.47262 * 59.21132 * 1 2 3 32 32 H 1.08996 * 109.46990 * 179.21112 * 1 2 3 33 33 H 1.09002 * 111.00521 * 322.18200 * 4 2 1 34 34 H 1.09003 * 111.00432 * 85.98712 * 4 2 1 35 35 H 0.96995 * 120.00558 * 334.99758 * 7 5 4 36 36 H 1.08007 * 126.18236 * 180.02562 * 12 11 10 37 37 H 1.08997 * 109.99189 * 218.66727 * 16 5 4 38 38 H 1.09000 * 109.77884 * 97.49512 * 16 5 4 39 39 H 1.09006 * 109.46936 * 60.00912 * 20 18 17 40 40 H 1.08998 * 109.47807 * 300.00056 * 20 18 17 41 41 H 0.97000 * 119.99573 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7754 -1.2269 5 6 3.4803 -1.1970 -0.7320 6 1 4.1966 -0.3874 -0.8724 7 7 3.9300 -2.4096 -1.4201 8 6 5.2475 -2.6669 -1.5403 9 8 6.0626 -1.8926 -1.0782 10 6 5.7015 -3.8906 -2.2354 11 7 6.9796 -4.2657 -2.4247 12 6 6.9591 -5.3998 -3.0774 13 7 5.6704 -5.7243 -3.2900 14 1 5.3543 -6.5163 -3.7522 15 7 4.9272 -4.8084 -2.7716 16 6 3.2540 -1.4696 0.7701 17 7 2.0431 -0.7373 1.1690 18 6 1.4961 -0.7357 2.4008 19 8 0.4944 -0.0876 2.6185 20 6 2.1292 -1.5392 3.5073 21 16 1.1686 -1.3337 5.0276 22 6 2.1053 -2.3494 6.1210 23 1 2.9844 -2.8632 5.7609 24 6 1.7135 -2.4891 7.4452 25 7 0.6419 -1.8633 7.8841 26 14 2.7063 -3.5664 8.6043 27 1 3.7578 -2.7490 9.2611 28 1 1.8079 -4.1405 9.6380 29 1 3.3424 -4.6660 7.8352 30 1 -0.3633 0.5015 0.8969 31 1 -0.3633 0.5260 -0.8828 32 1 -0.3633 -1.0275 -0.0141 33 1 1.4550 -1.6485 -1.4405 34 1 2.1414 -0.1262 -2.0997 35 1 3.2796 -3.0273 -1.7892 36 1 7.8206 -5.9722 -3.3884 37 1 4.1085 -1.1146 1.3461 38 1 3.1119 -2.5378 0.9338 39 1 3.1490 -1.1909 3.6716 40 1 2.1456 -2.5927 3.2279 41 1 0.1262 -1.3042 7.2821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701748180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:24 Heat of formation + Delta-G solvation = -8.113582 kcal Electronic energy + Delta-G solvation = -26262.088683 eV Core-core repulsion = 22304.039594 eV Total energy + Delta-G solvation = -3958.049089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.48547 -41.62316 -40.51350 -38.59583 -35.60727 -34.77843 -34.46919 -33.50723 -32.75784 -30.95274 -30.29494 -27.13387 -26.89147 -26.08945 -24.03888 -23.50618 -22.26318 -21.70997 -20.69203 -19.92072 -19.85136 -18.63706 -18.06145 -17.84160 -17.37976 -17.15957 -16.74918 -16.29537 -15.82195 -15.78903 -15.67207 -15.38265 -14.92273 -14.82572 -14.68388 -14.41257 -14.05939 -13.86551 -13.54762 -13.26916 -13.25323 -13.09520 -12.77601 -12.71080 -12.25235 -11.96581 -11.93674 -11.80377 -11.67192 -11.59192 -11.42737 -11.13326 -10.85285 -10.78458 -10.37341 -10.34591 -9.80772 -8.95863 -8.90478 -6.30880 0.20764 1.08978 1.12893 1.42679 1.47894 1.51835 1.58979 1.77660 1.87640 2.07170 2.18324 2.30564 2.99163 3.01207 3.13592 3.30136 3.38117 3.52444 3.70469 3.89432 3.97760 4.03783 4.10548 4.15766 4.26694 4.34948 4.51219 4.62373 4.71051 4.78800 4.86408 4.87831 5.10345 5.20626 5.23120 5.24223 5.53025 5.60695 5.91143 6.12425 6.23593 6.24507 6.87076 7.01371 7.03175 7.04343 8.47805 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.002730 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.983009 B =10255.425705 C =12378.839621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.086 0.914 4 C -0.114 4.114 5 C 0.146 3.854 6 H 0.112 0.888 7 N -0.687 5.687 8 C 0.614 3.386 9 O -0.548 6.548 10 C 0.121 3.879 11 N -0.516 5.516 12 C 0.219 3.781 13 N -0.377 5.377 14 H 0.473 0.527 15 N -0.273 5.273 16 C 0.084 3.916 17 N -0.610 5.610 18 C 0.550 3.450 19 O -0.548 6.548 20 C -0.105 4.105 21 S -0.184 6.184 22 C -0.616 4.616 23 H 0.070 0.930 24 C -0.017 4.017 25 N -0.911 5.911 26 Si 1.139 2.861 27 H -0.268 1.268 28 H -0.276 1.276 29 H -0.265 1.265 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.422 0.578 36 H 0.282 0.718 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 -9.589 -32.302 35.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.104 0.896 4 C -0.152 4.152 5 C 0.040 3.960 6 H 0.130 0.870 7 N -0.340 5.340 8 C 0.397 3.603 9 O -0.422 6.422 10 C -0.158 4.158 11 N -0.242 5.242 12 C -0.077 4.077 13 N -0.103 5.103 14 H 0.325 0.675 15 N -0.116 5.116 16 C -0.041 4.041 17 N -0.346 5.346 18 C 0.338 3.662 19 O -0.426 6.426 20 C -0.257 4.257 21 S 0.043 5.957 22 C -0.763 4.763 23 H 0.088 0.912 24 C -0.221 4.221 25 N -0.546 5.546 26 Si 0.956 3.044 27 H -0.193 1.193 28 H -0.201 1.201 29 H -0.189 1.189 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.260 0.740 36 H 0.297 0.703 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.213 -8.241 -29.865 32.322 hybrid contribution 0.734 -1.008 -1.795 2.185 sum 9.947 -9.249 -31.660 34.451 Atomic orbital electron populations 1.22083 0.93808 1.02396 1.03465 1.22161 0.95523 0.96279 0.83385 0.89564 1.23167 0.92657 1.02128 0.97274 1.21897 0.97947 0.87403 0.88748 0.87040 1.45494 1.05856 1.25276 1.57386 1.16586 0.82952 0.82551 0.78175 1.90843 1.54458 1.48095 1.48792 1.23527 0.87845 0.98231 1.06232 1.71264 1.21178 1.13399 1.18338 1.27652 0.90619 0.93315 0.96159 1.45179 1.05633 1.19794 1.39729 0.67492 1.74149 1.23869 1.00323 1.13299 1.22588 0.86902 0.97434 0.97159 1.48388 1.28181 1.49338 1.08657 1.19516 0.83408 0.81021 0.82253 1.90648 1.26088 1.44140 1.81755 1.23203 1.03188 1.03368 0.95919 1.84918 1.40569 1.65829 1.04435 1.24045 1.16597 1.35840 0.99842 0.91158 1.27835 0.97328 0.98589 0.98313 1.70888 1.16352 1.28492 1.38867 0.82693 0.74069 0.74284 0.73338 1.19282 1.20064 1.18913 0.92907 0.88859 0.93176 0.88167 0.85550 0.73970 0.70279 0.91198 0.90603 0.88218 0.87985 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.71 71.98 0.63 -3.06 16 2 C 0.13 2.68 3.76 45.47 0.17 2.86 16 3 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.11 -1.38 6.14 31.98 0.20 -1.18 16 5 C 0.15 2.42 3.31 46.18 0.15 2.58 16 6 H 0.11 2.01 7.55 -2.39 -0.02 2.00 16 7 N -0.69 -10.87 5.11 -439.74 -2.24 -13.11 16 8 C 0.61 13.98 7.83 86.79 0.68 14.66 16 9 O -0.55 -16.95 16.74 -3.89 -0.07 -17.01 16 10 C 0.12 2.40 7.96 137.13 1.09 3.49 16 11 N -0.52 -9.95 11.41 -193.03 -2.20 -12.15 16 12 C 0.22 1.36 13.14 180.30 2.37 3.73 16 13 N -0.38 -1.67 6.93 -60.37 -0.42 -2.09 16 14 H 0.47 -2.38 8.96 -219.80 -1.97 -4.35 16 15 N -0.27 -3.54 11.98 -52.44 -0.63 -4.17 16 16 C 0.08 1.93 6.25 86.73 0.54 2.47 16 17 N -0.61 -17.19 3.24 -788.14 -2.56 -19.74 16 18 C 0.55 21.56 7.65 87.66 0.67 22.23 16 19 O -0.55 -25.35 13.52 -3.04 -0.04 -25.39 16 20 C -0.11 -4.55 5.35 71.23 0.38 -4.17 16 21 S -0.18 -10.49 19.60 -56.49 -1.11 -11.60 16 22 C -0.62 -36.77 9.50 67.96 0.65 -36.12 16 23 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 24 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 25 N -0.91 -58.79 13.67 21.65 0.30 -58.50 16 26 Si 1.14 50.75 29.92 68.60 2.05 52.80 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 30 H 0.05 1.69 5.89 -2.39 -0.01 1.67 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.00 7.93 -2.39 -0.02 0.98 16 34 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.42 4.73 8.26 -92.71 -0.77 3.97 16 36 H 0.28 -1.63 8.06 -2.91 -0.02 -1.65 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.74 8.03 -2.39 -0.02 1.72 16 39 H 0.10 4.11 8.14 -2.39 -0.02 4.09 16 40 H 0.10 4.11 8.14 -2.40 -0.02 4.09 16 41 H 0.26 17.50 7.12 -92.71 -0.66 16.84 16 Total: -1.00 -95.12 365.10 -0.45 -95.57 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -1.53 Total: 8.47 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 7.99 Total: 6.92 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -7.75 Total: -109.76 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.11 Total: -42.40 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Atomic # 16 Polarization: -10.49 SS G_CDS: -1.11 Total: -11.60 kcal Total: -95.12 -0.45 -95.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.456 kcal (2) G-P(sol) polarization free energy of solvation -95.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds