Wall clock time and date at job start Tue Mar 31 2020 23:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.87136 * 2 1 4 4 C 1.54321 * 109.88172 * 121.17287 * 2 1 3 5 5 C 1.55161 * 102.93978 * 141.61391 * 4 2 1 6 6 H 1.08995 * 111.04078 * 82.58772 * 5 4 2 7 7 N 1.46503 * 111.00027 * 206.42092 * 5 4 2 8 8 C 1.34778 * 119.99607 * 198.64493 * 7 5 4 9 9 O 1.21553 * 120.00172 * 0.02562 * 8 7 5 10 10 C 1.47875 * 119.99492 * 180.02562 * 8 7 5 11 11 N 1.34554 * 126.04230 * 180.02562 * 10 8 7 12 12 C 1.30871 * 107.26342 * 180.02562 * 11 10 8 13 13 N 1.34580 * 107.63141 * 0.02562 * 12 11 10 14 14 H 0.96995 * 125.75400 * 179.97438 * 13 12 11 15 15 N 1.28858 * 108.49997 * 359.97438 * 13 12 11 16 16 C 1.54906 * 101.57980 * 324.49595 * 5 4 2 17 17 N 1.47020 * 109.88345 * 238.98162 * 2 1 3 18 18 C 1.34781 * 125.64810 * 61.67314 * 17 2 1 19 19 O 1.21279 * 119.99939 * 359.97438 * 18 17 2 20 20 C 1.50694 * 119.99982 * 179.97438 * 18 17 2 21 21 S 1.81005 * 109.47244 * 180.02562 * 20 18 17 22 22 C 1.76193 * 100.00082 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00389 * 359.97438 * 22 21 20 24 24 C 1.38798 * 120.00081 * 180.02562 * 22 21 20 25 25 N 1.31632 * 119.99851 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00093 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47208 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47031 * 120.00221 * 26 24 22 29 29 H 1.48500 * 109.46887 * 239.99626 * 26 24 22 30 30 H 1.09002 * 109.46717 * 179.56716 * 1 2 3 31 31 H 1.08999 * 109.47115 * 299.55938 * 1 2 3 32 32 H 1.08992 * 109.47254 * 59.56862 * 1 2 3 33 33 H 1.08995 * 110.72176 * 23.25185 * 4 2 1 34 34 H 1.08999 * 110.71997 * 259.97544 * 4 2 1 35 35 H 0.97001 * 120.00165 * 18.65437 * 7 5 4 36 36 H 1.08000 * 126.18674 * 179.97438 * 12 11 10 37 37 H 1.09005 * 110.36388 * 155.85240 * 16 5 4 38 38 H 1.09008 * 110.36510 * 278.06022 * 16 5 4 39 39 H 1.09003 * 109.47401 * 300.00205 * 20 18 17 40 40 H 1.09001 * 109.47652 * 60.00203 * 20 18 17 41 41 H 0.97003 * 119.99859 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 6 3.2877 -1.5151 0.6903 6 1 4.1659 -0.8702 0.6592 7 7 3.5533 -2.7215 1.4780 8 6 4.7625 -3.3134 1.4168 9 8 5.6329 -2.8462 0.7086 10 6 5.0304 -4.5314 2.2115 11 7 6.1873 -5.2178 2.2428 12 6 6.0191 -6.2254 3.0608 13 7 4.7605 -6.1614 3.5330 14 1 4.3582 -6.7824 4.1601 15 7 4.1799 -5.1359 3.0117 16 6 2.8146 -1.8783 -0.7393 17 7 2.0301 -0.7124 -1.1849 18 6 1.8085 -0.3580 -2.4662 19 8 1.1450 0.6257 -2.7172 20 6 2.3852 -1.1839 -3.5870 21 16 1.9158 -0.4559 -5.1763 22 6 2.6992 -1.5887 -6.2751 23 1 3.2594 -2.4238 -5.8808 24 6 2.5974 -1.4074 -7.6474 25 7 1.9152 -0.3895 -8.1280 26 14 3.4287 -2.6081 -8.8123 27 1 4.1276 -3.6566 -8.0267 28 1 2.4060 -3.2408 -9.6836 29 1 4.4135 -1.8808 -9.6528 30 1 -0.3633 -1.0277 -0.0078 31 1 -0.3633 0.5070 0.8939 32 1 -0.3633 0.5205 -0.8860 33 1 1.3052 -1.4481 1.6162 34 1 2.3529 -0.0487 2.0200 35 1 2.8588 -3.0942 2.0434 36 1 6.7567 -6.9736 3.3110 37 1 3.6717 -2.0318 -1.3950 38 1 2.1903 -2.7716 -0.7168 39 1 3.4718 -1.2022 -3.5029 40 1 1.9988 -2.2012 -3.5247 41 1 1.8438 -0.2630 -9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701748181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:28 Heat of formation + Delta-G solvation = 26.657510 kcal Electronic energy + Delta-G solvation = -26210.841128 eV Core-core repulsion = 22254.299826 eV Total energy + Delta-G solvation = -3956.541302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.97605 -40.48584 -39.32969 -37.30963 -34.64909 -33.91355 -32.38096 -32.19088 -32.11858 -29.98962 -28.65778 -26.01791 -25.45666 -25.26902 -23.50505 -22.43935 -21.38676 -20.84306 -19.44306 -18.92085 -17.88295 -17.61246 -16.93457 -16.77650 -16.65867 -15.59605 -15.26762 -15.08582 -14.77004 -14.72895 -14.41849 -14.18134 -13.76783 -13.56829 -13.10286 -12.98834 -12.74918 -12.57570 -12.53891 -12.02671 -11.90880 -11.66660 -11.22906 -11.15965 -11.04551 -11.02408 -10.97543 -10.93817 -10.70725 -10.56224 -10.27024 -9.76290 -9.62150 -9.25833 -9.02568 -8.50428 -8.18192 -6.44994 -6.17088 -3.87082 0.83758 1.64511 2.04234 2.41076 2.95164 2.97436 3.10728 3.25756 3.30562 3.35893 3.63612 3.77102 3.95669 4.14182 4.25217 4.34045 4.41568 4.65738 4.93480 5.02307 5.09955 5.18231 5.33544 5.40689 5.41695 5.50430 5.61017 5.62213 5.65567 5.69206 5.71704 5.95533 6.02414 6.06422 6.15322 6.21336 6.27799 6.54119 6.95918 7.46150 7.65155 7.68099 7.77984 8.40884 8.59594 9.28630 10.90434 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.002688 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.101554 B =10415.103469 C =12573.388435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.080 0.920 4 C -0.132 4.132 5 C 0.135 3.865 6 H 0.111 0.889 7 N -0.704 5.704 8 C 0.614 3.386 9 O -0.498 6.498 10 C 0.154 3.846 11 N -0.460 5.460 12 C 0.199 3.801 13 N -0.398 5.398 14 H 0.453 0.547 15 N -0.277 5.277 16 C 0.091 3.909 17 N -0.621 5.621 18 C 0.553 3.447 19 O -0.512 6.512 20 C -0.148 4.148 21 S -0.061 6.061 22 C -0.533 4.533 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.409 0.591 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -12.151 30.583 33.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.098 0.902 4 C -0.170 4.170 5 C 0.030 3.970 6 H 0.129 0.871 7 N -0.357 5.357 8 C 0.396 3.604 9 O -0.367 6.367 10 C -0.127 4.127 11 N -0.184 5.184 12 C -0.099 4.099 13 N -0.121 5.121 14 H 0.299 0.701 15 N -0.119 5.119 16 C -0.034 4.034 17 N -0.359 5.359 18 C 0.341 3.659 19 O -0.385 6.385 20 C -0.299 4.299 21 S 0.166 5.834 22 C -0.681 4.681 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.504 5.504 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.245 0.755 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.236 -9.763 29.202 30.872 hybrid contribution 0.926 -3.005 0.398 3.170 sum 3.162 -12.768 29.599 32.391 Atomic orbital electron populations 1.22148 0.94443 1.02341 1.03166 1.21449 0.95013 0.96555 0.83551 0.90204 1.23028 0.96501 0.99817 0.97672 1.22173 0.99183 0.85612 0.90077 0.87123 1.45573 1.13809 1.28762 1.47597 1.16302 0.82754 0.80786 0.80608 1.90901 1.44829 1.62490 1.38488 1.23810 0.88274 0.99971 1.00679 1.71350 1.23871 1.05170 1.18001 1.26803 0.88329 0.99694 0.95065 1.45137 1.11271 1.20976 1.34717 0.70071 1.74231 1.24955 1.00259 1.12429 1.22624 0.96162 0.89366 0.95275 1.48495 1.53861 1.28552 1.04992 1.19992 0.79662 0.84951 0.81270 1.90692 1.38570 1.26797 1.82471 1.23534 1.03849 1.02605 0.99904 1.85341 1.69629 1.37789 0.90632 1.22908 1.38136 1.13971 0.93071 0.90873 1.24990 0.95269 0.95996 0.97356 1.70033 1.38715 1.28076 1.13544 0.86118 0.79010 0.80301 0.80097 1.19573 1.20609 1.20555 0.92569 0.91916 0.90572 0.89627 0.89104 0.75464 0.75152 0.89468 0.91072 0.89158 0.89377 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.10 37.16 0.34 -1.52 16 2 C 0.14 1.59 3.46 -66.95 -0.23 1.36 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -0.99 6.10 -24.90 -0.15 -1.15 16 5 C 0.13 1.29 3.32 -65.78 -0.22 1.07 16 6 H 0.11 1.20 7.73 -51.93 -0.40 0.80 16 7 N -0.70 -6.07 5.23 -52.66 -0.28 -6.34 16 8 C 0.61 7.24 7.83 -12.31 -0.10 7.15 16 9 O -0.50 -7.86 16.84 5.32 0.09 -7.77 16 10 C 0.15 1.60 7.96 -156.35 -1.24 0.35 16 11 N -0.46 -4.76 11.41 -12.36 -0.14 -4.90 16 12 C 0.20 0.91 13.14 -90.49 -1.19 -0.28 16 13 N -0.40 -1.40 6.93 29.56 0.20 -1.19 16 14 H 0.45 -0.45 8.96 -190.21 -1.70 -2.15 16 15 N -0.28 -2.02 11.98 32.08 0.38 -1.63 16 16 C 0.09 1.11 6.38 -2.54 -0.02 1.09 16 17 N -0.62 -9.15 3.06 -163.02 -0.50 -9.65 16 18 C 0.55 10.92 7.66 -10.99 -0.08 10.83 16 19 O -0.51 -11.81 14.90 5.56 0.08 -11.73 16 20 C -0.15 -3.20 5.16 36.00 0.19 -3.01 16 21 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 22 C -0.53 -15.61 9.50 30.94 0.29 -15.32 16 23 H 0.07 2.05 7.80 -52.48 -0.41 1.65 16 24 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 25 N -0.87 -26.67 13.22 55.49 0.73 -25.94 16 26 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.13 6.88 -51.93 -0.36 0.78 16 33 H 0.09 0.51 7.70 -51.93 -0.40 0.11 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 2.55 8.22 -40.82 -0.34 2.21 16 36 H 0.23 -0.15 8.06 -52.49 -0.42 -0.58 16 37 H 0.09 1.20 7.48 -51.93 -0.39 0.81 16 38 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.09 1.86 7.85 -51.91 -0.41 1.45 16 40 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -41.05 367.97 -10.12 -51.17 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -6.50 Total: -3.25 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.51 Total: 2.61 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.41 Total: -49.65 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.17 Total: -19.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -41.05 -10.12 -51.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.826 kcal (2) G-P(sol) polarization free energy of solvation -41.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds