Wall clock time and date at job start Tue Mar 31 2020 23:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.87136 * 2 1 4 4 C 1.54321 * 109.88172 * 121.17287 * 2 1 3 5 5 C 1.55161 * 102.93978 * 141.61391 * 4 2 1 6 6 H 1.08995 * 111.04078 * 82.58772 * 5 4 2 7 7 N 1.46503 * 111.00027 * 206.42092 * 5 4 2 8 8 C 1.34778 * 119.99607 * 198.64493 * 7 5 4 9 9 O 1.21553 * 120.00172 * 0.02562 * 8 7 5 10 10 C 1.47875 * 119.99492 * 180.02562 * 8 7 5 11 11 N 1.34554 * 126.04230 * 180.02562 * 10 8 7 12 12 C 1.30871 * 107.26342 * 180.02562 * 11 10 8 13 13 N 1.34580 * 107.63141 * 0.02562 * 12 11 10 14 14 H 0.96995 * 125.75400 * 179.97438 * 13 12 11 15 15 N 1.28858 * 108.49997 * 359.97438 * 13 12 11 16 16 C 1.54906 * 101.57980 * 324.49595 * 5 4 2 17 17 N 1.47020 * 109.88345 * 238.98162 * 2 1 3 18 18 C 1.34781 * 125.64810 * 61.67314 * 17 2 1 19 19 O 1.21279 * 119.99939 * 359.97438 * 18 17 2 20 20 C 1.50694 * 119.99982 * 179.97438 * 18 17 2 21 21 S 1.81005 * 109.47244 * 180.02562 * 20 18 17 22 22 C 1.76193 * 100.00082 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00389 * 359.97438 * 22 21 20 24 24 C 1.38798 * 120.00081 * 180.02562 * 22 21 20 25 25 N 1.31632 * 119.99851 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00093 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47208 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47031 * 120.00221 * 26 24 22 29 29 H 1.48500 * 109.46887 * 239.99626 * 26 24 22 30 30 H 1.09002 * 109.46717 * 179.56716 * 1 2 3 31 31 H 1.08999 * 109.47115 * 299.55938 * 1 2 3 32 32 H 1.08992 * 109.47254 * 59.56862 * 1 2 3 33 33 H 1.08995 * 110.72176 * 23.25185 * 4 2 1 34 34 H 1.08999 * 110.71997 * 259.97544 * 4 2 1 35 35 H 0.97001 * 120.00165 * 18.65437 * 7 5 4 36 36 H 1.08000 * 126.18674 * 179.97438 * 12 11 10 37 37 H 1.09005 * 110.36388 * 155.85240 * 16 5 4 38 38 H 1.09008 * 110.36510 * 278.06022 * 16 5 4 39 39 H 1.09003 * 109.47401 * 300.00205 * 20 18 17 40 40 H 1.09001 * 109.47652 * 60.00203 * 20 18 17 41 41 H 0.97003 * 119.99859 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 6 3.2877 -1.5151 0.6903 6 1 4.1659 -0.8702 0.6592 7 7 3.5533 -2.7215 1.4780 8 6 4.7625 -3.3134 1.4168 9 8 5.6329 -2.8462 0.7086 10 6 5.0304 -4.5314 2.2115 11 7 6.1873 -5.2178 2.2428 12 6 6.0191 -6.2254 3.0608 13 7 4.7605 -6.1614 3.5330 14 1 4.3582 -6.7824 4.1601 15 7 4.1799 -5.1359 3.0117 16 6 2.8146 -1.8783 -0.7393 17 7 2.0301 -0.7124 -1.1849 18 6 1.8085 -0.3580 -2.4662 19 8 1.1450 0.6257 -2.7172 20 6 2.3852 -1.1839 -3.5870 21 16 1.9158 -0.4559 -5.1763 22 6 2.6992 -1.5887 -6.2751 23 1 3.2594 -2.4238 -5.8808 24 6 2.5974 -1.4074 -7.6474 25 7 1.9152 -0.3895 -8.1280 26 14 3.4287 -2.6081 -8.8123 27 1 4.1276 -3.6566 -8.0267 28 1 2.4060 -3.2408 -9.6836 29 1 4.4135 -1.8808 -9.6528 30 1 -0.3633 -1.0277 -0.0078 31 1 -0.3633 0.5070 0.8939 32 1 -0.3633 0.5205 -0.8860 33 1 1.3052 -1.4481 1.6162 34 1 2.3529 -0.0487 2.0200 35 1 2.8588 -3.0942 2.0434 36 1 6.7567 -6.9736 3.3110 37 1 3.6717 -2.0318 -1.3950 38 1 2.1903 -2.7716 -0.7168 39 1 3.4718 -1.2022 -3.5029 40 1 1.9988 -2.2012 -3.5247 41 1 1.8438 -0.2630 -9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701748181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:27 Heat of formation + Delta-G solvation = -5.286027 kcal Electronic energy + Delta-G solvation = -26212.226304 eV Core-core repulsion = 22254.299826 eV Total energy + Delta-G solvation = -3957.926477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.46350 -41.54861 -40.44944 -38.58792 -35.60655 -34.61558 -34.45190 -33.38058 -32.72887 -30.88719 -30.21214 -27.69789 -26.92539 -26.06586 -24.00468 -23.43591 -22.24882 -21.66967 -20.37232 -19.86370 -19.51508 -18.62545 -18.08055 -17.73961 -17.37347 -16.91753 -16.76078 -16.46928 -16.07939 -15.78609 -15.63816 -15.35367 -14.95292 -14.58278 -14.51868 -14.36852 -14.11967 -13.60844 -13.33913 -13.24334 -13.18779 -12.99584 -12.92705 -12.63555 -12.56041 -12.08582 -11.86499 -11.78620 -11.74232 -11.64576 -11.40773 -11.18149 -10.96985 -10.78421 -10.36203 -10.32378 -9.75672 -8.70595 -8.37586 -6.16085 0.23011 1.14289 1.19322 1.38885 1.39372 1.48603 1.53710 1.58566 1.91651 2.14339 2.20987 2.24467 2.96237 3.09040 3.23556 3.35642 3.44711 3.56727 3.80507 3.92422 4.03212 4.09579 4.16718 4.19439 4.37549 4.40980 4.56367 4.68149 4.73144 4.84922 4.87560 4.89424 5.10143 5.23430 5.25350 5.33139 5.38957 5.47714 5.93560 6.17202 6.27681 6.30508 6.91638 7.03533 7.06679 7.08743 8.72047 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.002688 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.101554 B =10415.103469 C =12573.388435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.073 0.927 4 C -0.110 4.110 5 C 0.143 3.857 6 H 0.098 0.902 7 N -0.683 5.683 8 C 0.612 3.388 9 O -0.551 6.551 10 C 0.122 3.878 11 N -0.519 5.519 12 C 0.219 3.781 13 N -0.377 5.377 14 H 0.474 0.526 15 N -0.269 5.269 16 C 0.084 3.916 17 N -0.610 5.610 18 C 0.551 3.449 19 O -0.554 6.554 20 C -0.125 4.125 21 S -0.141 6.141 22 C -0.548 4.548 23 H 0.078 0.922 24 C 0.015 3.985 25 N -0.909 5.909 26 Si 0.999 3.001 27 H -0.260 1.260 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.034 0.966 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.424 0.576 36 H 0.281 0.719 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -15.060 33.657 37.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.091 0.909 4 C -0.147 4.147 5 C 0.037 3.963 6 H 0.116 0.884 7 N -0.336 5.336 8 C 0.395 3.605 9 O -0.424 6.424 10 C -0.157 4.157 11 N -0.244 5.244 12 C -0.078 4.078 13 N -0.103 5.103 14 H 0.326 0.674 15 N -0.113 5.113 16 C -0.040 4.040 17 N -0.346 5.346 18 C 0.339 3.661 19 O -0.432 6.432 20 C -0.276 4.276 21 S 0.086 5.914 22 C -0.696 4.696 23 H 0.096 0.904 24 C -0.190 4.190 25 N -0.546 5.546 26 Si 0.821 3.179 27 H -0.184 1.184 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.264 0.736 36 H 0.296 0.704 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.508 -12.725 32.382 34.882 hybrid contribution 0.827 -2.198 -0.352 2.375 sum 3.335 -14.922 32.030 35.493 Atomic orbital electron populations 1.22096 0.93999 1.02643 1.02777 1.21800 0.95441 0.96674 0.83577 0.90916 1.23008 0.95612 1.00124 0.95995 1.21986 0.99657 0.85919 0.88771 0.88429 1.45365 1.13364 1.28012 1.46883 1.16631 0.82753 0.81097 0.80022 1.90865 1.46523 1.64163 1.40895 1.23491 0.89308 1.00508 1.02439 1.71275 1.24936 1.07423 1.20766 1.27629 0.88908 0.98593 0.92658 1.45178 1.11059 1.20051 1.33989 0.67441 1.74133 1.24637 1.00849 1.11641 1.22825 0.95488 0.88972 0.96712 1.48378 1.52833 1.29123 1.04255 1.19600 0.79574 0.84316 0.82611 1.90675 1.40629 1.28431 1.83424 1.23343 1.04267 1.02954 0.97004 1.85441 1.70653 1.39958 0.95334 1.23202 1.38456 1.14106 0.93801 0.90415 1.26126 0.95707 0.97979 0.99208 1.70182 1.40054 1.30092 1.14238 0.84901 0.77980 0.77671 0.77364 1.18410 1.19498 1.19715 0.91807 0.88573 0.94723 0.86734 0.86142 0.73648 0.70369 0.91425 0.89402 0.88484 0.88022 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.10 71.98 0.66 -2.69 16 2 C 0.13 2.76 3.46 45.34 0.16 2.91 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.11 -1.27 6.10 31.78 0.19 -1.08 16 5 C 0.14 2.50 3.32 46.38 0.15 2.65 16 6 H 0.10 2.06 7.73 -2.39 -0.02 2.04 16 7 N -0.68 -10.53 5.23 -438.79 -2.29 -12.82 16 8 C 0.61 14.22 7.83 86.80 0.68 14.90 16 9 O -0.55 -18.01 16.84 -3.88 -0.07 -18.07 16 10 C 0.12 2.40 7.96 137.13 1.09 3.50 16 11 N -0.52 -10.14 11.41 -193.03 -2.20 -12.34 16 12 C 0.22 1.33 13.14 180.30 2.37 3.70 16 13 N -0.38 -1.38 6.93 -60.38 -0.42 -1.80 16 14 H 0.47 -2.84 8.96 -219.80 -1.97 -4.81 16 15 N -0.27 -3.24 11.98 -52.43 -0.63 -3.87 16 16 C 0.08 2.00 6.38 86.86 0.55 2.55 16 17 N -0.61 -17.89 3.06 -788.07 -2.42 -20.30 16 18 C 0.55 22.49 7.66 87.65 0.67 23.16 16 19 O -0.55 -26.87 14.90 -3.03 -0.05 -26.92 16 20 C -0.12 -5.55 5.16 71.23 0.37 -5.18 16 21 S -0.14 -8.25 20.57 -56.49 -1.16 -9.41 16 22 C -0.55 -32.88 9.50 67.95 0.65 -32.24 16 23 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 24 C 0.01 0.87 5.49 84.86 0.47 1.33 16 25 N -0.91 -57.27 13.22 21.65 0.29 -56.99 16 26 Si 1.00 45.41 29.55 68.60 2.03 47.44 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 1.04 6.88 -2.39 -0.02 1.02 16 33 H 0.11 0.76 7.70 -2.39 -0.02 0.75 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.42 3.98 8.22 -92.71 -0.76 3.22 16 36 H 0.28 -1.62 8.06 -2.91 -0.02 -1.64 16 37 H 0.07 1.90 7.48 -2.38 -0.02 1.88 16 38 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.10 4.14 7.85 -2.39 -0.02 4.12 16 40 H 0.10 4.19 8.14 -2.39 -0.02 4.17 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -96.69 367.97 -0.55 -97.24 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -1.63 Total: 4.32 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 8.01 Total: 13.53 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -7.67 Total: -108.12 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.11 Total: -44.99 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -96.69 -0.55 -97.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.954 kcal (2) G-P(sol) polarization free energy of solvation -96.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds