Wall clock time and date at job start Tue Mar 31 2020 23:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09015 * 109.99527 * 2 1 4 4 C 1.54332 * 109.78027 * 121.16236 * 2 1 3 5 5 C 1.55162 * 103.01758 * 97.49962 * 4 2 1 6 6 H 1.08995 * 111.00131 * 277.23273 * 5 4 2 7 7 N 1.46501 * 111.03555 * 153.39558 * 5 4 2 8 8 C 1.34776 * 119.99972 * 161.33274 * 7 5 4 9 9 O 1.21560 * 119.99851 * 359.97438 * 8 7 5 10 10 C 1.47868 * 120.00425 * 179.97438 * 8 7 5 11 11 N 1.34537 * 126.05211 * 180.02562 * 10 8 7 12 12 C 1.30876 * 107.27306 * 180.02562 * 11 10 8 13 13 N 1.34584 * 107.62214 * 359.97438 * 12 11 10 14 14 H 0.96991 * 125.74986 * 180.02562 * 13 12 11 15 15 N 1.28855 * 108.50335 * 359.73564 * 13 12 11 16 16 C 1.54919 * 101.57945 * 35.30770 * 5 4 2 17 17 N 1.47021 * 109.88623 * 238.90837 * 2 1 3 18 18 C 1.34776 * 125.64521 * 59.55394 * 17 2 1 19 19 O 1.21280 * 120.00458 * 359.72037 * 18 17 2 20 20 C 1.50702 * 119.99564 * 179.72273 * 18 17 2 21 21 S 1.81008 * 109.46925 * 180.02562 * 20 18 17 22 22 C 1.76202 * 99.99767 * 179.97438 * 21 20 18 23 23 H 1.07996 * 120.00286 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99642 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00322 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99881 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47261 * 239.99700 * 26 24 22 29 29 H 1.48500 * 109.47454 * 119.99693 * 26 24 22 30 30 H 1.08998 * 109.46923 * 179.64357 * 1 2 3 31 31 H 1.08999 * 109.47127 * 299.64059 * 1 2 3 32 32 H 1.09004 * 109.47446 * 59.63986 * 1 2 3 33 33 H 1.08993 * 110.85055 * 339.03217 * 4 2 1 34 34 H 1.09003 * 110.66775 * 215.88153 * 4 2 1 35 35 H 0.96997 * 120.00143 * 341.32721 * 7 5 4 36 36 H 1.07997 * 126.18562 * 180.02562 * 12 11 10 37 37 H 1.09004 * 110.36173 * 204.15026 * 16 5 4 38 38 H 1.09000 * 110.45974 * 81.88019 * 16 5 4 39 39 H 1.08998 * 109.47573 * 60.00437 * 20 18 17 40 40 H 1.09000 * 109.46955 * 299.99406 * 20 18 17 41 41 H 0.97004 * 120.00251 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0523 -0.7515 1.2427 5 6 2.3562 -2.1697 0.6914 6 1 1.4523 -2.7777 0.6579 7 7 3.3998 -2.8283 1.4810 8 6 3.5479 -4.1665 1.4194 9 8 2.8152 -4.8270 0.7090 10 6 4.6015 -4.8313 2.2158 11 7 4.8565 -6.1519 2.2462 12 6 5.8588 -6.3354 3.0674 13 7 6.2222 -5.1298 3.5426 14 1 6.9405 -4.9619 4.1724 15 7 5.4591 -4.2354 3.0152 16 6 2.8614 -1.8464 -0.7370 17 7 2.0301 -0.7140 -1.1839 18 6 1.7753 -0.3843 -2.4657 19 8 1.0746 0.5729 -2.7179 20 6 2.3613 -1.2052 -3.5855 21 16 1.8410 -0.5147 -5.1758 22 6 2.6456 -1.6341 -6.2732 23 1 3.2401 -2.4444 -5.8778 24 6 2.5153 -1.4744 -7.6458 25 7 1.7903 -0.4872 -8.1277 26 14 3.3677 -2.6615 -8.8092 27 1 4.1147 -3.6755 -8.0223 28 1 4.3135 -1.9126 -9.6753 29 1 2.3532 -3.3400 -9.6551 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8868 33 1 1.2886 -0.7951 2.0191 34 1 2.9600 -0.2826 1.6225 35 1 3.9842 -2.3013 2.0480 36 1 6.3128 -7.2828 3.3178 37 1 2.7179 -2.7047 -1.3934 38 1 3.9126 -1.5593 -0.7134 39 1 2.0109 -2.2340 -3.5037 40 1 3.4491 -1.1854 -3.5197 41 1 1.3474 0.1291 -7.5236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701748182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:31 Heat of formation + Delta-G solvation = 21.559758 kcal Electronic energy + Delta-G solvation = -26273.121664 eV Core-core repulsion = 22316.359307 eV Total energy + Delta-G solvation = -3956.762357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.99623 -40.56384 -39.39387 -37.40393 -34.68629 -33.93476 -32.48459 -32.29187 -32.12908 -29.92362 -28.80566 -26.09851 -25.33747 -24.79681 -23.53997 -22.68618 -21.21013 -20.90153 -19.48557 -19.09681 -18.20236 -17.91285 -17.06539 -16.87836 -16.30844 -15.72445 -15.37184 -15.24718 -14.91842 -14.50429 -14.36395 -14.01538 -13.82074 -13.60083 -13.19874 -13.16252 -12.77246 -12.60596 -12.37307 -12.29724 -11.86146 -11.73392 -11.63562 -11.37835 -11.24707 -11.03435 -10.91238 -10.85741 -10.58783 -10.28989 -10.16359 -9.70129 -9.53369 -9.34462 -8.96774 -8.59134 -8.17647 -6.62663 -6.58126 -3.95445 0.81477 1.62339 2.02018 2.37326 2.84906 2.93389 2.99543 3.36987 3.44356 3.47611 3.59258 3.72726 3.93368 4.09454 4.26520 4.30533 4.38685 4.62195 4.85495 4.96432 5.01009 5.26493 5.26934 5.35984 5.39092 5.47658 5.50484 5.53908 5.57292 5.66768 5.69720 5.83604 5.97583 6.00000 6.08688 6.13158 6.24587 6.48477 6.92623 7.43848 7.58015 7.74905 7.98981 8.48372 8.54817 9.31482 10.86054 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.002697 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.797089 B =10379.169641 C =12536.369321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.137 3.863 6 H 0.111 0.889 7 N -0.704 5.704 8 C 0.615 3.385 9 O -0.498 6.498 10 C 0.153 3.847 11 N -0.460 5.460 12 C 0.199 3.801 13 N -0.398 5.398 14 H 0.453 0.547 15 N -0.277 5.277 16 C 0.089 3.911 17 N -0.620 5.620 18 C 0.551 3.449 19 O -0.512 6.512 20 C -0.126 4.126 21 S -0.117 6.117 22 C -0.605 4.605 23 H 0.066 0.934 24 C 0.035 3.965 25 N -0.886 5.886 26 Si 1.090 2.910 27 H -0.288 1.288 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.410 0.590 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 -7.562 31.328 33.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 H 0.098 0.902 4 C -0.171 4.171 5 C 0.031 3.969 6 H 0.129 0.871 7 N -0.358 5.358 8 C 0.396 3.604 9 O -0.367 6.367 10 C -0.128 4.128 11 N -0.184 5.184 12 C -0.099 4.099 13 N -0.121 5.121 14 H 0.299 0.701 15 N -0.119 5.119 16 C -0.036 4.036 17 N -0.358 5.358 18 C 0.340 3.660 19 O -0.386 6.386 20 C -0.277 4.277 21 S 0.110 5.890 22 C -0.753 4.753 23 H 0.085 0.915 24 C -0.175 4.175 25 N -0.520 5.520 26 Si 0.916 3.084 27 H -0.214 1.214 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.249 0.751 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.282 -6.534 28.507 30.396 hybrid contribution 1.856 -0.947 2.795 3.487 sum 10.138 -7.480 31.303 33.743 Atomic orbital electron populations 1.22189 0.94379 1.02594 1.03262 1.21446 0.95135 0.96367 0.83483 0.90242 1.23017 1.02721 0.93659 0.97691 1.22148 0.91164 0.93639 0.89934 0.87132 1.45571 1.36543 1.06200 1.47465 1.16303 0.81597 0.81914 0.80614 1.90903 1.43163 1.64224 1.38419 1.23791 0.99296 0.88902 1.00763 1.71343 1.13810 1.15229 1.18000 1.26809 0.95290 0.92854 0.94906 1.45136 1.27267 1.05244 1.34427 0.70058 1.74235 1.05619 1.19659 1.12367 1.22662 0.95258 0.90226 0.95410 1.48457 1.51822 1.30571 1.04923 1.19960 0.80078 0.84626 0.81347 1.90691 1.37201 1.28215 1.82469 1.23317 1.03743 1.02525 0.98097 1.84765 1.68100 1.42258 0.93898 1.23761 1.39014 1.17516 0.95029 0.91523 1.26052 0.96263 0.99278 0.95952 1.70736 1.28052 1.14300 1.38960 0.83253 0.75855 0.74526 0.74749 1.21363 1.20930 1.20866 0.92384 0.91832 0.90467 0.88883 0.89768 0.75442 0.75126 0.89490 0.90925 0.88901 0.89115 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.05 37.16 0.34 -1.61 16 2 C 0.14 1.59 3.51 -66.95 -0.23 1.35 16 3 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 4 C -0.13 -0.98 6.11 -24.89 -0.15 -1.14 16 5 C 0.14 1.30 3.32 -65.77 -0.22 1.08 16 6 H 0.11 1.20 7.73 -51.93 -0.40 0.80 16 7 N -0.70 -6.01 5.23 -52.65 -0.28 -6.29 16 8 C 0.61 7.20 7.83 -12.32 -0.10 7.11 16 9 O -0.50 -7.84 16.84 5.31 0.09 -7.75 16 10 C 0.15 1.58 7.96 -156.36 -1.24 0.34 16 11 N -0.46 -4.73 11.41 -12.37 -0.14 -4.87 16 12 C 0.20 0.90 13.14 -90.48 -1.19 -0.29 16 13 N -0.40 -1.37 6.93 29.56 0.20 -1.17 16 14 H 0.45 -0.48 8.96 -190.22 -1.70 -2.18 16 15 N -0.28 -2.00 11.98 32.07 0.38 -1.61 16 16 C 0.09 1.08 6.38 -2.53 -0.02 1.07 16 17 N -0.62 -9.06 3.08 -163.01 -0.50 -9.56 16 18 C 0.55 10.83 7.65 -10.98 -0.08 10.74 16 19 O -0.51 -11.71 14.75 5.56 0.08 -11.63 16 20 C -0.13 -2.72 5.16 36.01 0.19 -2.53 16 21 S -0.12 -3.24 19.60 -107.50 -2.11 -5.34 16 22 C -0.61 -17.97 9.50 30.94 0.29 -17.67 16 23 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 24 C 0.03 1.04 5.49 -17.43 -0.10 0.94 16 25 N -0.89 -28.11 13.67 55.49 0.76 -27.35 16 26 Si 1.09 25.80 29.92 -169.99 -5.09 20.71 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.17 6.74 -51.93 -0.35 0.82 16 33 H 0.09 0.54 7.83 -51.93 -0.41 0.14 16 34 H 0.08 0.47 8.00 -51.93 -0.42 0.06 16 35 H 0.41 2.50 8.22 -40.82 -0.34 2.17 16 36 H 0.23 -0.17 8.06 -52.49 -0.42 -0.59 16 37 H 0.09 1.19 7.48 -51.93 -0.39 0.80 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.93 7.85 -51.92 -0.41 1.52 16 40 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 41 H 0.28 9.00 7.13 -40.82 -0.29 8.71 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -41.69 366.31 -10.03 -51.71 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.44 Total: -1.77 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.51 Total: -0.61 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.43 Total: -50.84 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.17 Total: -19.38 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.09 Total: 20.71 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.11 Total: -5.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -41.69 -10.03 -51.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.273 kcal (2) G-P(sol) polarization free energy of solvation -41.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds