Wall clock time and date at job start Tue Mar 31 2020 23:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09015 * 109.99527 * 2 1 4 4 C 1.54332 * 109.78027 * 121.16236 * 2 1 3 5 5 C 1.55162 * 103.01758 * 97.49962 * 4 2 1 6 6 H 1.08995 * 111.00131 * 277.23273 * 5 4 2 7 7 N 1.46501 * 111.03555 * 153.39558 * 5 4 2 8 8 C 1.34776 * 119.99972 * 161.33274 * 7 5 4 9 9 O 1.21560 * 119.99851 * 359.97438 * 8 7 5 10 10 C 1.47868 * 120.00425 * 179.97438 * 8 7 5 11 11 N 1.34537 * 126.05211 * 180.02562 * 10 8 7 12 12 C 1.30876 * 107.27306 * 180.02562 * 11 10 8 13 13 N 1.34584 * 107.62214 * 359.97438 * 12 11 10 14 14 H 0.96991 * 125.74986 * 180.02562 * 13 12 11 15 15 N 1.28855 * 108.50335 * 359.73564 * 13 12 11 16 16 C 1.54919 * 101.57945 * 35.30770 * 5 4 2 17 17 N 1.47021 * 109.88623 * 238.90837 * 2 1 3 18 18 C 1.34776 * 125.64521 * 59.55394 * 17 2 1 19 19 O 1.21280 * 120.00458 * 359.72037 * 18 17 2 20 20 C 1.50702 * 119.99564 * 179.72273 * 18 17 2 21 21 S 1.81008 * 109.46925 * 180.02562 * 20 18 17 22 22 C 1.76202 * 99.99767 * 179.97438 * 21 20 18 23 23 H 1.07996 * 120.00286 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99642 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00322 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99881 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47261 * 239.99700 * 26 24 22 29 29 H 1.48500 * 109.47454 * 119.99693 * 26 24 22 30 30 H 1.08998 * 109.46923 * 179.64357 * 1 2 3 31 31 H 1.08999 * 109.47127 * 299.64059 * 1 2 3 32 32 H 1.09004 * 109.47446 * 59.63986 * 1 2 3 33 33 H 1.08993 * 110.85055 * 339.03217 * 4 2 1 34 34 H 1.09003 * 110.66775 * 215.88153 * 4 2 1 35 35 H 0.96997 * 120.00143 * 341.32721 * 7 5 4 36 36 H 1.07997 * 126.18562 * 180.02562 * 12 11 10 37 37 H 1.09004 * 110.36173 * 204.15026 * 16 5 4 38 38 H 1.09000 * 110.45974 * 81.88019 * 16 5 4 39 39 H 1.08998 * 109.47573 * 60.00437 * 20 18 17 40 40 H 1.09000 * 109.46955 * 299.99406 * 20 18 17 41 41 H 0.97004 * 120.00251 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0523 -0.7515 1.2427 5 6 2.3562 -2.1697 0.6914 6 1 1.4523 -2.7777 0.6579 7 7 3.3998 -2.8283 1.4810 8 6 3.5479 -4.1665 1.4194 9 8 2.8152 -4.8270 0.7090 10 6 4.6015 -4.8313 2.2158 11 7 4.8565 -6.1519 2.2462 12 6 5.8588 -6.3354 3.0674 13 7 6.2222 -5.1298 3.5426 14 1 6.9405 -4.9619 4.1724 15 7 5.4591 -4.2354 3.0152 16 6 2.8614 -1.8464 -0.7370 17 7 2.0301 -0.7140 -1.1839 18 6 1.7753 -0.3843 -2.4657 19 8 1.0746 0.5729 -2.7179 20 6 2.3613 -1.2052 -3.5855 21 16 1.8410 -0.5147 -5.1758 22 6 2.6456 -1.6341 -6.2732 23 1 3.2401 -2.4444 -5.8778 24 6 2.5153 -1.4744 -7.6458 25 7 1.7903 -0.4872 -8.1277 26 14 3.3677 -2.6615 -8.8092 27 1 4.1147 -3.6755 -8.0223 28 1 4.3135 -1.9126 -9.6753 29 1 2.3532 -3.3400 -9.6551 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8868 33 1 1.2886 -0.7951 2.0191 34 1 2.9600 -0.2826 1.6225 35 1 3.9842 -2.3013 2.0480 36 1 6.3128 -7.2828 3.3178 37 1 2.7179 -2.7047 -1.3934 38 1 3.9126 -1.5593 -0.7134 39 1 2.0109 -2.2340 -3.5037 40 1 3.4491 -1.1854 -3.5197 41 1 1.3474 0.1291 -7.5236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701748182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:30 Heat of formation + Delta-G solvation = -10.926296 kcal Electronic energy + Delta-G solvation = -26274.530365 eV Core-core repulsion = 22316.359307 eV Total energy + Delta-G solvation = -3958.171058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.47807 -41.63070 -40.49916 -38.66986 -35.63583 -34.78130 -34.46713 -33.49220 -32.72352 -30.83647 -30.35163 -27.13252 -26.98637 -26.09913 -24.09151 -23.61390 -22.11407 -21.68622 -20.69691 -20.08191 -19.84516 -18.61668 -18.32765 -17.45495 -17.39495 -17.13965 -16.60758 -16.32863 -15.80852 -15.76585 -15.65761 -15.57109 -14.88227 -14.75678 -14.63420 -14.42972 -14.22692 -13.92586 -13.82833 -13.30223 -13.25128 -13.07832 -12.77956 -12.52479 -12.27079 -11.96013 -11.80789 -11.78165 -11.66130 -11.59985 -11.42294 -11.14186 -11.07255 -10.80035 -10.39593 -10.36790 -9.83322 -8.96376 -8.91233 -6.31444 0.21178 1.07478 1.13219 1.40267 1.46957 1.50801 1.59571 1.76809 1.87078 2.07934 2.18759 2.29916 2.98883 3.00647 3.13075 3.30088 3.37909 3.54598 3.68335 3.89109 4.02651 4.04542 4.05229 4.11862 4.25420 4.34105 4.49794 4.63079 4.65618 4.82946 4.86404 4.88165 5.02062 5.21593 5.23906 5.25307 5.43399 5.61021 5.92134 6.12125 6.21125 6.25928 6.89375 6.98097 7.02573 7.05261 8.47309 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.002697 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.797089 B =10379.169641 C =12536.369321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 H 0.083 0.917 4 C -0.111 4.111 5 C 0.144 3.856 6 H 0.097 0.903 7 N -0.683 5.683 8 C 0.612 3.388 9 O -0.551 6.551 10 C 0.122 3.878 11 N -0.518 5.518 12 C 0.219 3.781 13 N -0.376 5.376 14 H 0.474 0.526 15 N -0.269 5.269 16 C 0.083 3.917 17 N -0.609 5.609 18 C 0.550 3.450 19 O -0.553 6.553 20 C -0.105 4.105 21 S -0.185 6.185 22 C -0.615 4.615 23 H 0.070 0.930 24 C -0.018 4.018 25 N -0.911 5.911 26 Si 1.142 2.858 27 H -0.267 1.267 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.425 0.575 36 H 0.281 0.719 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 -8.784 34.643 37.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.101 0.899 4 C -0.149 4.149 5 C 0.038 3.962 6 H 0.115 0.885 7 N -0.337 5.337 8 C 0.395 3.605 9 O -0.425 6.425 10 C -0.158 4.158 11 N -0.244 5.244 12 C -0.078 4.078 13 N -0.103 5.103 14 H 0.326 0.674 15 N -0.113 5.113 16 C -0.042 4.042 17 N -0.344 5.344 18 C 0.338 3.662 19 O -0.431 6.431 20 C -0.256 4.256 21 S 0.042 5.958 22 C -0.762 4.762 23 H 0.088 0.912 24 C -0.221 4.221 25 N -0.546 5.546 26 Si 0.959 3.041 27 H -0.191 1.191 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.264 0.736 36 H 0.297 0.703 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.915 -7.731 31.943 34.631 hybrid contribution 1.147 -0.605 1.995 2.380 sum 12.062 -8.336 33.939 36.971 Atomic orbital electron populations 1.22163 0.94685 1.02280 1.02982 1.21806 0.95050 0.96929 0.83470 0.89916 1.23008 1.04853 0.91002 0.95997 1.21965 0.90716 0.94858 0.88650 0.88502 1.45364 1.36155 1.05383 1.46754 1.16634 0.81369 0.82458 0.80025 1.90867 1.45304 1.65462 1.40830 1.23476 1.00404 0.89367 1.02520 1.71268 1.16633 1.15726 1.20767 1.27636 0.93276 0.94338 0.92507 1.45179 1.26773 1.04595 1.33706 0.67432 1.74136 1.05218 1.20320 1.11591 1.22871 0.95861 0.88606 0.96815 1.48348 1.50904 1.30982 1.04163 1.19534 0.79992 0.84019 0.82648 1.90676 1.39136 1.29863 1.83388 1.23193 1.04486 1.02611 0.95337 1.84914 1.69068 1.43621 0.98228 1.24063 1.38828 1.17585 0.95757 0.91198 1.27849 0.95953 1.00021 0.98260 1.70857 1.29682 1.15403 1.38655 0.82653 0.75409 0.72875 0.73128 1.19125 1.19572 1.19781 0.92641 0.88359 0.94510 0.86059 0.86641 0.73615 0.70347 0.91520 0.89180 0.88348 0.87788 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.05 71.98 0.65 -3.03 16 2 C 0.13 2.73 3.51 45.34 0.16 2.89 16 3 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 4 C -0.11 -1.24 6.11 31.79 0.19 -1.04 16 5 C 0.14 2.48 3.32 46.39 0.15 2.64 16 6 H 0.10 2.03 7.73 -2.39 -0.02 2.01 16 7 N -0.68 -10.35 5.23 -438.77 -2.29 -12.65 16 8 C 0.61 14.11 7.83 86.79 0.68 14.79 16 9 O -0.55 -17.92 16.84 -3.90 -0.07 -17.99 16 10 C 0.12 2.38 7.96 137.13 1.09 3.47 16 11 N -0.52 -10.06 11.41 -193.04 -2.20 -12.26 16 12 C 0.22 1.30 13.14 180.30 2.37 3.67 16 13 N -0.38 -1.32 6.93 -60.38 -0.42 -1.74 16 14 H 0.47 -2.91 8.96 -219.81 -1.97 -4.88 16 15 N -0.27 -3.20 11.98 -52.44 -0.63 -3.82 16 16 C 0.08 1.93 6.38 86.86 0.55 2.48 16 17 N -0.61 -17.53 3.08 -788.02 -2.43 -19.96 16 18 C 0.55 22.18 7.65 87.66 0.67 22.85 16 19 O -0.55 -26.41 14.75 -3.03 -0.04 -26.45 16 20 C -0.10 -4.65 5.16 71.24 0.37 -4.28 16 21 S -0.19 -10.72 19.60 -56.49 -1.11 -11.83 16 22 C -0.61 -37.24 9.50 67.95 0.65 -36.60 16 23 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 24 C -0.02 -1.05 5.49 84.86 0.47 -0.59 16 25 N -0.91 -59.29 13.67 21.65 0.30 -59.00 16 26 Si 1.14 51.55 29.92 68.60 2.05 53.61 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.14 6.74 -2.38 -0.02 1.12 16 33 H 0.12 0.82 7.83 -2.39 -0.02 0.80 16 34 H 0.12 0.68 8.00 -2.39 -0.02 0.66 16 35 H 0.42 3.86 8.22 -92.71 -0.76 3.09 16 36 H 0.28 -1.66 8.06 -2.91 -0.02 -1.69 16 37 H 0.07 1.86 7.48 -2.39 -0.02 1.84 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 4.22 7.85 -2.40 -0.02 4.20 16 40 H 0.10 4.28 8.14 -2.40 -0.02 4.26 16 41 H 0.26 17.67 7.13 -92.70 -0.66 17.01 16 Total: -1.00 -98.05 366.31 -0.36 -98.41 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -1.52 Total: 6.43 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 8.00 Total: 7.24 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -7.67 Total: -109.43 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.11 Total: -44.44 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.61 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.11 Total: -11.83 kcal Total: -98.05 -0.36 -98.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.485 kcal (2) G-P(sol) polarization free energy of solvation -98.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds