Wall clock time and date at job start Tue Mar 31 2020 23:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.87022 * 2 1 4 4 C 1.54362 * 109.85081 * 238.81527 * 2 1 3 5 5 C 1.55153 * 102.92543 * 262.73191 * 4 2 1 6 6 H 1.09004 * 111.00475 * 82.63666 * 5 4 2 7 7 N 1.46494 * 111.00518 * 206.45395 * 5 4 2 8 8 C 1.34782 * 120.00156 * 201.81803 * 7 5 4 9 9 O 1.21561 * 119.99617 * 0.02562 * 8 7 5 10 10 C 1.47864 * 120.00532 * 179.97438 * 8 7 5 11 11 N 1.34556 * 126.04730 * 359.97438 * 10 8 7 12 12 C 1.30864 * 107.27307 * 180.02562 * 11 10 8 13 13 N 1.34586 * 107.62344 * 0.02562 * 12 11 10 14 14 H 0.97001 * 125.75263 * 179.97438 * 13 12 11 15 15 N 1.28854 * 108.50443 * 359.97438 * 13 12 11 16 16 C 1.54905 * 101.61394 * 324.54484 * 5 4 2 17 17 N 1.47023 * 109.87936 * 121.00699 * 2 1 3 18 18 C 1.34771 * 125.65178 * 300.44214 * 17 2 1 19 19 O 1.21283 * 120.00011 * 0.02562 * 18 17 2 20 20 C 1.50705 * 120.00128 * 180.02562 * 18 17 2 21 21 S 1.81002 * 109.47204 * 180.02562 * 20 18 17 22 22 C 1.76196 * 100.00167 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.38789 * 120.00199 * 179.97438 * 22 21 20 25 25 N 1.31631 * 120.00098 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00184 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47146 * 60.00321 * 26 24 22 28 28 H 1.48499 * 109.47256 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47519 * 300.00107 * 26 24 22 30 30 H 1.09003 * 109.47755 * 300.44334 * 1 2 3 31 31 H 1.08995 * 109.47129 * 60.44736 * 1 2 3 32 32 H 1.09004 * 109.47213 * 180.44217 * 1 2 3 33 33 H 1.09000 * 110.70649 * 144.38118 * 4 2 1 34 34 H 1.09001 * 110.75226 * 21.10088 * 4 2 1 35 35 H 0.96993 * 120.00392 * 21.81970 * 7 5 4 36 36 H 1.07998 * 126.19344 * 180.02562 * 12 11 10 37 37 H 1.09001 * 110.36835 * 155.82463 * 16 5 4 38 38 H 1.09001 * 110.36889 * 278.15118 * 16 5 4 39 39 H 1.09000 * 109.46517 * 299.99998 * 20 18 17 40 40 H 1.08998 * 109.47365 * 60.00224 * 20 18 17 41 41 H 0.97007 * 120.00205 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0541 -0.7518 -1.2421 5 6 2.3519 -2.1705 -0.6891 6 1 1.4456 -2.7752 -0.6562 7 7 3.3938 -2.8333 -1.4772 8 6 3.4964 -4.1772 -1.4641 9 8 2.7241 -4.8392 -0.7985 10 6 4.5476 -4.8463 -2.2600 11 7 5.4612 -4.2364 -3.0371 12 6 6.2060 -5.1720 -3.5687 13 7 5.7525 -6.3574 -3.1209 14 1 6.1156 -7.2268 -3.3513 15 7 4.7545 -6.1428 -2.3345 16 6 2.8568 -1.8486 0.7396 17 7 2.0299 -0.7122 1.1850 18 6 1.7752 -0.3808 2.4663 19 8 1.0783 0.5796 2.7172 20 6 2.3564 -1.2034 3.5873 21 16 1.8361 -0.5107 5.1765 22 6 2.6335 -1.6335 6.2755 23 1 3.2253 -2.4465 5.8813 24 6 2.5013 -1.4733 7.6478 25 7 1.7797 -0.4828 8.1283 26 14 3.3462 -2.6641 8.8130 27 1 4.8133 -2.6213 8.5866 28 1 3.0500 -2.2780 10.2160 29 1 2.8467 -4.0400 8.5627 30 1 -0.3635 0.5207 0.8860 31 1 -0.3633 0.5068 -0.8939 32 1 -0.3634 -1.0277 0.0079 33 1 2.9646 -0.2858 -1.6189 34 1 1.2908 -0.7932 -2.0191 35 1 4.0098 -2.3052 -2.0086 36 1 7.0347 -5.0204 -4.2445 37 1 2.7088 -2.7058 1.3964 38 1 3.9091 -1.5655 0.7153 39 1 2.0016 -2.2308 3.5056 40 1 3.4443 -1.1884 3.5228 41 1 1.6870 -0.3710 9.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701748183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:34 Heat of formation + Delta-G solvation = 25.897642 kcal Electronic energy + Delta-G solvation = -26221.255180 eV Core-core repulsion = 22264.680928 eV Total energy + Delta-G solvation = -3956.574252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.97759 -40.48588 -39.32904 -37.30841 -34.70285 -33.89486 -32.38139 -32.16078 -31.93281 -29.99040 -28.66673 -26.03623 -25.46033 -25.27022 -23.44184 -22.65322 -21.12285 -20.86828 -19.54048 -19.02534 -17.72975 -17.55411 -16.92808 -16.84188 -16.32106 -15.74697 -15.37622 -14.99121 -14.79028 -14.75016 -14.34010 -14.12398 -13.88900 -13.49192 -13.10551 -13.04227 -12.70640 -12.58957 -12.50638 -12.11879 -11.73037 -11.58050 -11.31625 -11.25891 -11.07265 -10.99681 -10.98883 -10.82694 -10.72194 -10.58708 -10.27455 -9.78230 -9.59972 -9.23167 -9.01139 -8.49516 -8.18985 -6.44979 -6.16788 -3.87042 0.90949 1.57109 1.96443 2.59056 2.95045 2.98769 3.11171 3.27713 3.29893 3.33133 3.55985 3.68913 4.07654 4.20290 4.25399 4.33346 4.37763 4.70350 4.93391 5.05686 5.10689 5.18229 5.35866 5.41267 5.43864 5.57051 5.61445 5.62421 5.65280 5.69764 5.75547 5.95990 6.05631 6.06824 6.15662 6.21562 6.32498 6.57415 7.00166 7.45597 7.64384 7.69004 7.79043 8.40272 8.60429 9.28491 10.90598 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.002671 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.008173 B =10479.615068 C =12616.808222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.132 4.132 5 C 0.135 3.865 6 H 0.111 0.889 7 N -0.699 5.699 8 C 0.616 3.384 9 O -0.507 6.507 10 C 0.147 3.853 11 N -0.485 5.485 12 C 0.201 3.799 13 N -0.400 5.400 14 H 0.454 0.546 15 N -0.245 5.245 16 C 0.090 3.910 17 N -0.621 5.621 18 C 0.552 3.448 19 O -0.511 6.511 20 C -0.149 4.149 21 S -0.060 6.060 22 C -0.534 4.534 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.413 0.587 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.611 -8.165 -30.196 32.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.171 4.171 5 C 0.030 3.970 6 H 0.129 0.871 7 N -0.352 5.352 8 C 0.398 3.602 9 O -0.378 6.378 10 C -0.133 4.133 11 N -0.212 5.212 12 C -0.097 4.097 13 N -0.123 5.123 14 H 0.301 0.699 15 N -0.085 5.085 16 C -0.035 4.035 17 N -0.359 5.359 18 C 0.341 3.659 19 O -0.385 6.385 20 C -0.299 4.299 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.504 5.504 26 Si 0.744 3.256 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.249 0.751 36 H 0.248 0.752 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.458 -7.063 -28.707 30.489 hybrid contribution 2.391 -2.330 -0.230 3.347 sum 9.849 -9.393 -28.937 31.977 Atomic orbital electron populations 1.22190 0.94470 1.02542 1.03224 1.21442 0.95068 0.96418 0.83548 0.90269 1.23024 1.02702 0.93682 0.97673 1.22171 0.91279 0.93610 0.89990 0.87093 1.45501 1.35099 1.05578 1.49032 1.16272 0.81677 0.82198 0.80093 1.90901 1.41429 1.64570 1.40906 1.23758 0.99872 0.87429 1.02266 1.71286 1.06358 1.31850 1.11698 1.26631 1.01236 0.80916 1.00952 1.45292 1.22642 1.11715 1.32641 0.69905 1.74410 1.04789 1.18632 1.10651 1.22643 0.95375 0.90184 0.95264 1.48491 1.52045 1.30370 1.04977 1.19986 0.79954 0.84676 0.81267 1.90691 1.37291 1.28062 1.82478 1.23536 1.03750 1.02691 0.99927 1.85338 1.67224 1.40138 0.90587 1.22825 1.36464 1.15873 0.93095 0.90994 1.24979 0.95270 0.95968 0.97327 1.70012 1.37397 1.29238 1.13716 0.86232 0.79651 0.80603 0.79068 1.19960 1.20828 1.19911 0.90431 0.91917 0.92446 0.89717 0.88970 0.75086 0.75231 0.89598 0.90921 0.89209 0.89364 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.06 37.16 0.34 -1.65 16 2 C 0.14 1.62 3.50 -66.93 -0.23 1.39 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.13 -1.03 6.13 -24.88 -0.15 -1.18 16 5 C 0.13 1.32 3.37 -65.79 -0.22 1.10 16 6 H 0.11 1.23 7.63 -51.93 -0.40 0.84 16 7 N -0.70 -6.23 5.21 -52.67 -0.27 -6.50 16 8 C 0.62 7.27 7.83 -12.32 -0.10 7.17 16 9 O -0.51 -7.88 16.78 5.31 0.09 -7.80 16 10 C 0.15 1.53 7.96 -156.35 -1.24 0.28 16 11 N -0.49 -3.73 11.09 -12.37 -0.14 -3.87 16 12 C 0.20 0.73 13.14 -90.49 -1.19 -0.46 16 13 N -0.40 -1.74 6.93 29.56 0.20 -1.53 16 14 H 0.45 0.01 8.96 -190.21 -1.70 -1.69 16 15 N -0.25 -2.40 12.30 32.07 0.39 -2.01 16 16 C 0.09 1.10 6.39 -2.53 -0.02 1.09 16 17 N -0.62 -9.18 3.08 -162.99 -0.50 -9.68 16 18 C 0.55 10.92 7.65 -10.99 -0.08 10.83 16 19 O -0.51 -11.81 14.76 5.55 0.08 -11.73 16 20 C -0.15 -3.20 5.16 36.01 0.19 -3.01 16 21 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 22 C -0.53 -15.65 9.50 30.94 0.29 -15.35 16 23 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 24 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 25 N -0.87 -26.66 13.22 55.49 0.73 -25.92 16 26 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 30 H 0.08 1.19 6.74 -51.93 -0.35 0.84 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.51 8.00 -51.93 -0.42 0.09 16 34 H 0.09 0.58 7.83 -51.93 -0.41 0.17 16 35 H 0.41 2.80 8.25 -40.82 -0.34 2.47 16 36 H 0.23 -0.40 8.06 -52.49 -0.42 -0.82 16 37 H 0.09 1.17 7.48 -51.93 -0.39 0.78 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.85 7.85 -51.92 -0.41 1.44 16 40 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -40.55 367.62 -10.11 -50.66 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.49 Total: -2.49 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.52 Total: 2.26 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.42 Total: -49.51 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.17 Total: -19.52 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.55 -10.11 -50.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.557 kcal (2) G-P(sol) polarization free energy of solvation -40.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds