Wall clock time and date at job start Tue Mar 31 2020 23:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.87022 * 2 1 4 4 C 1.54362 * 109.85081 * 238.81527 * 2 1 3 5 5 C 1.55153 * 102.92543 * 262.73191 * 4 2 1 6 6 H 1.09004 * 111.00475 * 82.63666 * 5 4 2 7 7 N 1.46494 * 111.00518 * 206.45395 * 5 4 2 8 8 C 1.34782 * 120.00156 * 201.81803 * 7 5 4 9 9 O 1.21561 * 119.99617 * 0.02562 * 8 7 5 10 10 C 1.47864 * 120.00532 * 179.97438 * 8 7 5 11 11 N 1.34556 * 126.04730 * 359.97438 * 10 8 7 12 12 C 1.30864 * 107.27307 * 180.02562 * 11 10 8 13 13 N 1.34586 * 107.62344 * 0.02562 * 12 11 10 14 14 H 0.97001 * 125.75263 * 179.97438 * 13 12 11 15 15 N 1.28854 * 108.50443 * 359.97438 * 13 12 11 16 16 C 1.54905 * 101.61394 * 324.54484 * 5 4 2 17 17 N 1.47023 * 109.87936 * 121.00699 * 2 1 3 18 18 C 1.34771 * 125.65178 * 300.44214 * 17 2 1 19 19 O 1.21283 * 120.00011 * 0.02562 * 18 17 2 20 20 C 1.50705 * 120.00128 * 180.02562 * 18 17 2 21 21 S 1.81002 * 109.47204 * 180.02562 * 20 18 17 22 22 C 1.76196 * 100.00167 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.38789 * 120.00199 * 179.97438 * 22 21 20 25 25 N 1.31631 * 120.00098 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00184 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47146 * 60.00321 * 26 24 22 28 28 H 1.48499 * 109.47256 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47519 * 300.00107 * 26 24 22 30 30 H 1.09003 * 109.47755 * 300.44334 * 1 2 3 31 31 H 1.08995 * 109.47129 * 60.44736 * 1 2 3 32 32 H 1.09004 * 109.47213 * 180.44217 * 1 2 3 33 33 H 1.09000 * 110.70649 * 144.38118 * 4 2 1 34 34 H 1.09001 * 110.75226 * 21.10088 * 4 2 1 35 35 H 0.96993 * 120.00392 * 21.81970 * 7 5 4 36 36 H 1.07998 * 126.19344 * 180.02562 * 12 11 10 37 37 H 1.09001 * 110.36835 * 155.82463 * 16 5 4 38 38 H 1.09001 * 110.36889 * 278.15118 * 16 5 4 39 39 H 1.09000 * 109.46517 * 299.99998 * 20 18 17 40 40 H 1.08998 * 109.47365 * 60.00224 * 20 18 17 41 41 H 0.97007 * 120.00205 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0541 -0.7518 -1.2421 5 6 2.3519 -2.1705 -0.6891 6 1 1.4456 -2.7752 -0.6562 7 7 3.3938 -2.8333 -1.4772 8 6 3.4964 -4.1772 -1.4641 9 8 2.7241 -4.8392 -0.7985 10 6 4.5476 -4.8463 -2.2600 11 7 5.4612 -4.2364 -3.0371 12 6 6.2060 -5.1720 -3.5687 13 7 5.7525 -6.3574 -3.1209 14 1 6.1156 -7.2268 -3.3513 15 7 4.7545 -6.1428 -2.3345 16 6 2.8568 -1.8486 0.7396 17 7 2.0299 -0.7122 1.1850 18 6 1.7752 -0.3808 2.4663 19 8 1.0783 0.5796 2.7172 20 6 2.3564 -1.2034 3.5873 21 16 1.8361 -0.5107 5.1765 22 6 2.6335 -1.6335 6.2755 23 1 3.2253 -2.4465 5.8813 24 6 2.5013 -1.4733 7.6478 25 7 1.7797 -0.4828 8.1283 26 14 3.3462 -2.6641 8.8130 27 1 4.8133 -2.6213 8.5866 28 1 3.0500 -2.2780 10.2160 29 1 2.8467 -4.0400 8.5627 30 1 -0.3635 0.5207 0.8860 31 1 -0.3633 0.5068 -0.8939 32 1 -0.3634 -1.0277 0.0079 33 1 2.9646 -0.2858 -1.6189 34 1 1.2908 -0.7932 -2.0191 35 1 4.0098 -2.3052 -2.0086 36 1 7.0347 -5.0204 -4.2445 37 1 2.7088 -2.7058 1.3964 38 1 3.9091 -1.5655 0.7153 39 1 2.0016 -2.2308 3.5056 40 1 3.4443 -1.1884 3.5228 41 1 1.6870 -0.3710 9.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701748183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:33 Heat of formation + Delta-G solvation = -5.428992 kcal Electronic energy + Delta-G solvation = -26222.613605 eV Core-core repulsion = 22264.680928 eV Total energy + Delta-G solvation = -3957.932677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.45924 -41.55505 -40.44755 -38.59302 -35.61955 -34.61298 -34.45460 -33.38162 -32.47067 -30.93207 -30.23928 -27.69155 -26.94354 -26.10409 -23.87134 -23.67449 -22.04307 -21.65545 -20.44550 -19.97703 -19.59349 -18.41777 -18.04423 -17.46931 -17.38812 -16.90799 -16.71811 -16.67398 -16.00026 -15.87925 -15.63447 -15.28200 -14.87524 -14.66085 -14.50693 -14.34087 -14.12240 -13.75910 -13.22240 -13.20136 -13.19303 -13.08175 -12.89159 -12.62866 -12.48459 -12.21354 -11.77383 -11.74883 -11.72007 -11.59528 -11.50475 -11.15523 -10.96630 -10.83212 -10.34381 -10.31257 -9.74940 -8.70215 -8.36868 -6.15630 0.26973 1.14033 1.19149 1.37008 1.41795 1.45487 1.53525 1.55073 1.99668 2.19817 2.24687 2.27082 2.96726 3.02864 3.21744 3.37218 3.45695 3.63641 3.80718 3.95809 4.05651 4.09884 4.14980 4.20294 4.37817 4.41528 4.56413 4.68872 4.71038 4.87884 4.90607 4.92323 5.07636 5.24219 5.27140 5.30922 5.38529 5.49914 5.93003 6.17009 6.29913 6.31625 6.90902 7.03820 7.06311 7.09662 8.72232 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.002671 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.008173 B =10479.615068 C =12616.808222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 H 0.082 0.918 4 C -0.111 4.111 5 C 0.143 3.857 6 H 0.097 0.903 7 N -0.679 5.679 8 C 0.613 3.387 9 O -0.557 6.557 10 C 0.124 3.876 11 N -0.505 5.505 12 C 0.224 3.776 13 N -0.385 5.385 14 H 0.471 0.529 15 N -0.284 5.284 16 C 0.084 3.916 17 N -0.610 5.610 18 C 0.551 3.449 19 O -0.553 6.553 20 C -0.125 4.125 21 S -0.141 6.141 22 C -0.550 4.550 23 H 0.078 0.922 24 C 0.015 3.985 25 N -0.909 5.909 26 Si 0.998 3.002 27 H -0.261 1.261 28 H -0.275 1.275 29 H -0.264 1.264 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.426 0.574 36 H 0.287 0.713 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.275 -9.339 -33.236 36.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.100 0.900 4 C -0.149 4.149 5 C 0.037 3.963 6 H 0.115 0.885 7 N -0.332 5.332 8 C 0.396 3.604 9 O -0.432 6.432 10 C -0.156 4.156 11 N -0.233 5.233 12 C -0.073 4.073 13 N -0.110 5.110 14 H 0.322 0.678 15 N -0.125 5.125 16 C -0.040 4.040 17 N -0.346 5.346 18 C 0.339 3.661 19 O -0.431 6.431 20 C -0.276 4.276 21 S 0.086 5.914 22 C -0.698 4.698 23 H 0.096 0.904 24 C -0.190 4.190 25 N -0.545 5.545 26 Si 0.820 3.180 27 H -0.186 1.186 28 H -0.200 1.200 29 H -0.189 1.189 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.266 0.734 36 H 0.302 0.698 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.172 -8.250 -31.838 34.426 hybrid contribution 1.644 -2.008 0.513 2.645 sum 11.816 -10.258 -31.325 35.015 Atomic orbital electron populations 1.22161 0.94781 1.02223 1.02936 1.21787 0.94977 0.96948 0.83557 0.90010 1.23011 1.04748 0.91119 0.96006 1.21985 0.90814 0.94760 0.88781 0.88476 1.45310 1.34772 1.04839 1.48258 1.16601 0.81496 0.82719 0.79586 1.90867 1.43460 1.65695 1.43151 1.23464 1.00702 0.87844 1.03597 1.71258 1.06678 1.33098 1.12216 1.27672 1.00693 0.79531 0.99409 1.45285 1.21269 1.13150 1.31316 0.67767 1.74303 1.06900 1.18893 1.12424 1.22850 0.95973 0.88608 0.96597 1.48373 1.51157 1.30816 1.04236 1.19601 0.79843 0.84071 0.82592 1.90675 1.39265 1.29757 1.83422 1.23346 1.04510 1.02737 0.96981 1.85444 1.68520 1.42071 0.95326 1.23143 1.36738 1.16074 0.93819 0.90369 1.26119 0.95773 0.97886 0.99196 1.70170 1.38822 1.31241 1.14310 0.85013 0.78764 0.77889 0.76382 1.18582 1.19966 1.18909 0.94446 0.88499 0.92692 0.86707 0.86265 0.73441 0.69835 0.91418 0.89158 0.88515 0.87927 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.06 71.98 0.65 -3.13 16 2 C 0.13 2.82 3.50 45.35 0.16 2.98 16 3 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.11 -1.34 6.13 31.79 0.19 -1.14 16 5 C 0.14 2.54 3.37 46.38 0.16 2.70 16 6 H 0.10 2.10 7.63 -2.39 -0.02 2.08 16 7 N -0.68 -10.86 5.21 -438.81 -2.29 -13.14 16 8 C 0.61 14.21 7.83 86.79 0.68 14.89 16 9 O -0.56 -17.81 16.78 -3.91 -0.07 -17.88 16 10 C 0.12 2.43 7.96 137.12 1.09 3.52 16 11 N -0.51 -6.42 11.09 -193.04 -2.14 -8.56 16 12 C 0.22 0.79 13.14 180.30 2.37 3.16 16 13 N -0.39 -2.38 6.93 -60.38 -0.42 -2.79 16 14 H 0.47 -1.24 8.96 -219.79 -1.97 -3.21 16 15 N -0.28 -5.28 12.30 -52.44 -0.65 -5.92 16 16 C 0.08 1.98 6.39 86.85 0.55 2.53 16 17 N -0.61 -17.85 3.08 -787.98 -2.43 -20.28 16 18 C 0.55 22.41 7.65 87.66 0.67 23.08 16 19 O -0.55 -26.77 14.76 -3.04 -0.04 -26.82 16 20 C -0.12 -5.52 5.16 71.24 0.37 -5.15 16 21 S -0.14 -8.22 20.57 -56.49 -1.16 -9.38 16 22 C -0.55 -32.92 9.50 67.95 0.65 -32.27 16 23 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 24 C 0.02 0.90 5.49 84.85 0.47 1.36 16 25 N -0.91 -57.23 13.22 21.65 0.29 -56.94 16 26 Si 1.00 45.21 29.55 68.60 2.03 47.23 16 27 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 30 H 0.04 1.18 6.74 -2.39 -0.02 1.16 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.11 0.80 8.00 -2.39 -0.02 0.78 16 34 H 0.12 0.94 7.83 -2.39 -0.02 0.92 16 35 H 0.43 4.54 8.25 -92.71 -0.76 3.78 16 36 H 0.29 -2.64 8.06 -2.91 -0.02 -2.66 16 37 H 0.07 1.87 7.48 -2.39 -0.02 1.85 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 4.10 7.85 -2.40 -0.02 4.08 16 40 H 0.10 4.19 8.14 -2.40 -0.02 4.17 16 41 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -95.14 367.62 -0.51 -95.65 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -1.64 Total: 6.32 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 8.01 Total: 12.52 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -7.63 Total: -107.65 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.11 Total: -44.70 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -95.14 -0.51 -95.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701748183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.224 kcal (2) G-P(sol) polarization free energy of solvation -95.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds