Wall clock time and date at job start Tue Mar 31 2020 22:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48503 * 109.46770 * 239.99586 * 3 2 1 5 5 H 1.48499 * 109.47505 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46733 * 119.99828 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.08996 * 112.84823 * 316.19572 * 15 14 13 17 17 C 1.53787 * 113.61355 * 87.50373 * 15 14 13 18 18 C 1.53783 * 87.08023 * 139.98452 * 17 15 14 19 19 H 1.08995 * 113.61720 * 89.11229 * 18 17 15 20 20 N 1.46498 * 113.61081 * 220.02115 * 18 17 15 21 21 C 1.34777 * 119.99476 * 252.49544 * 20 18 17 22 22 O 1.21557 * 120.00507 * 359.97438 * 21 20 18 23 23 C 1.47875 * 119.99743 * 180.02562 * 21 20 18 24 24 N 1.34553 * 126.04507 * 179.97438 * 23 21 20 25 25 C 1.30871 * 107.26659 * 179.97438 * 24 23 21 26 26 N 1.34588 * 107.62525 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.74735 * 179.97438 * 26 25 24 28 28 N 1.28851 * 108.50390 * 359.72482 * 26 25 24 29 29 C 1.53782 * 113.61417 * 185.00090 * 15 14 13 30 30 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 32 32 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 33 33 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 34 34 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 35 35 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 36 36 H 1.08998 * 113.61128 * 254.53330 * 17 15 14 37 37 H 1.08998 * 113.61325 * 25.42994 * 17 15 14 38 38 H 0.97001 * 120.00513 * 72.49254 * 20 18 17 39 39 H 1.07999 * 126.18737 * 180.02562 * 25 24 23 40 40 H 1.09001 * 113.61616 * 334.56263 * 29 15 14 41 41 H 1.08993 * 113.61391 * 105.46950 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 6 3.5025 -8.6985 0.0125 16 1 4.2928 -8.4186 -0.6841 17 6 4.0136 -9.0405 1.4220 18 6 4.1658 -10.4894 0.9298 19 1 5.1385 -10.6996 0.4850 20 7 3.7633 -11.4910 1.9202 21 6 4.6980 -12.2333 2.5461 22 8 5.8750 -12.0721 2.2886 23 6 4.2916 -13.2446 3.5455 24 7 5.1179 -14.0488 4.2392 25 6 4.3732 -14.7941 5.0155 26 7 3.0897 -14.4509 4.8009 27 1 2.3178 -14.8409 5.2401 28 7 3.0593 -13.5134 3.9174 29 6 3.0721 -10.1703 -0.1032 30 1 -0.4850 0.8401 -0.0004 31 1 3.1244 -3.7313 0.8906 32 1 3.1245 -3.7313 -0.8893 33 1 3.8009 -6.1835 0.0004 34 1 1.7216 -7.8708 0.8982 35 1 1.7219 -7.8795 -0.8818 36 1 4.9608 -8.5621 1.6709 37 1 3.2603 -8.9207 2.2006 38 1 2.8240 -11.6199 2.1256 39 1 4.7251 -15.5482 5.7039 40 1 2.0614 -10.3594 0.2586 41 1 3.2593 -10.6040 -1.0854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702493222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:26 Heat of formation + Delta-G solvation = 34.104106 kcal Electronic energy + Delta-G solvation = -24834.402927 eV Core-core repulsion = 20878.184534 eV Total energy + Delta-G solvation = -3956.218393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.03277 -40.53198 -39.24613 -38.38953 -34.75578 -33.97179 -33.58219 -32.41285 -31.89636 -29.85262 -27.36057 -26.09452 -25.52900 -25.22971 -23.56393 -22.35510 -20.95914 -20.56416 -19.91036 -19.32563 -17.86052 -17.78168 -16.93609 -16.86281 -16.25176 -15.83001 -15.56520 -15.36530 -15.17433 -14.83904 -14.78822 -14.49206 -13.90999 -13.66662 -13.13983 -12.84981 -12.80472 -12.63426 -12.53574 -12.33652 -11.83921 -11.54114 -11.29036 -11.07156 -11.06623 -11.02662 -11.02257 -10.74881 -10.71230 -10.56282 -10.33156 -9.80719 -9.44830 -9.36812 -9.04804 -8.84179 -8.22368 -6.48366 -6.20077 -3.90621 0.78446 1.57704 2.00988 2.47515 2.89771 3.06181 3.12939 3.24896 3.28876 3.32921 3.69366 3.73558 3.90049 4.09005 4.22178 4.25348 4.32599 4.44745 4.47752 4.97305 5.14888 5.15545 5.20129 5.33730 5.36948 5.39638 5.47438 5.58416 5.64813 5.66645 5.70835 5.82908 5.92101 5.96398 6.07906 6.16585 6.18115 6.65628 6.94274 7.40947 7.60839 7.72912 7.74400 8.36580 8.64407 9.25136 10.87266 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025797 B = 0.001509 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.127052 B =18545.969293 C =18615.772913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.738 5.738 14 C 0.134 3.866 15 C -0.120 4.120 16 H 0.103 0.897 17 C -0.147 4.147 18 C 0.122 3.878 19 H 0.120 0.880 20 N -0.702 5.702 21 C 0.615 3.385 22 O -0.508 6.508 23 C 0.150 3.850 24 N -0.462 5.462 25 C 0.198 3.802 26 N -0.397 5.397 27 H 0.453 0.547 28 N -0.275 5.275 29 C -0.134 4.134 30 H 0.269 0.731 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.409 0.591 39 H 0.232 0.768 40 H 0.092 0.908 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -32.383 7.774 34.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.392 5.392 14 C 0.010 3.990 15 C -0.139 4.139 16 H 0.121 0.879 17 C -0.185 4.185 18 C 0.018 3.982 19 H 0.138 0.862 20 N -0.354 5.354 21 C 0.396 3.604 22 O -0.379 6.379 23 C -0.131 4.131 24 N -0.186 5.186 25 C -0.100 4.100 26 N -0.120 5.120 27 H 0.300 0.700 28 N -0.117 5.117 29 C -0.173 4.173 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.245 0.755 39 H 0.249 0.751 40 H 0.111 0.889 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.373 -32.091 7.198 33.500 hybrid contribution 1.490 0.711 0.750 1.813 sum 7.863 -31.379 7.948 33.311 Atomic orbital electron populations 1.70013 1.05950 1.27538 1.46828 1.24987 0.95022 0.99004 0.94527 0.86227 0.79236 0.81244 0.78806 1.19937 1.20816 1.19947 1.22836 0.94898 0.91697 1.59023 0.90967 1.85379 1.05016 0.96314 1.96725 1.23533 1.06523 0.95458 1.04923 1.20305 0.86525 0.86325 0.75137 1.90699 1.15411 1.85655 1.47641 1.45989 1.09948 1.05463 1.77834 1.21230 0.95055 0.80404 1.02353 1.22608 0.98659 0.94440 0.98202 0.87922 1.23600 1.02617 0.95349 0.96979 1.22660 0.99998 0.86546 0.88985 0.86171 1.45752 1.09983 1.38081 1.41584 1.16335 0.85616 0.79104 0.79309 1.90851 1.16968 1.67130 1.62953 1.23893 0.85386 1.01522 1.02265 1.71335 1.32249 1.07000 1.08021 1.26800 0.80737 1.01390 1.01043 1.45148 1.10786 1.26522 1.29576 0.70001 1.74252 1.23767 1.06688 1.06995 1.23341 0.99197 0.95102 0.99658 0.92149 0.89245 0.89219 0.76776 0.91518 0.91412 0.90437 0.89167 0.75541 0.75150 0.88931 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 9.85 7.85 -10.99 -0.09 9.76 16 12 O -0.52 -11.79 15.86 5.55 0.09 -11.70 16 13 N -0.74 -9.50 5.56 -60.29 -0.33 -9.84 16 14 C 0.13 1.43 5.51 -4.04 -0.02 1.41 16 15 C -0.12 -0.86 3.76 -89.80 -0.34 -1.20 16 16 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.15 -1.11 7.43 -25.91 -0.19 -1.31 16 18 C 0.12 0.90 4.24 -67.11 -0.28 0.62 16 19 H 0.12 1.00 7.46 -51.93 -0.39 0.61 16 20 N -0.70 -5.50 5.35 -53.95 -0.29 -5.79 16 21 C 0.62 6.67 7.83 -12.32 -0.10 6.57 16 22 O -0.51 -7.28 16.69 5.32 0.09 -7.19 16 23 C 0.15 1.46 7.96 -156.35 -1.24 0.22 16 24 N -0.46 -4.37 11.41 -12.36 -0.14 -4.51 16 25 C 0.20 0.77 13.14 -90.48 -1.19 -0.42 16 26 N -0.40 -1.24 6.93 29.57 0.20 -1.04 16 27 H 0.45 -0.56 8.96 -190.21 -1.70 -2.27 16 28 N -0.28 -1.92 11.98 32.08 0.38 -1.54 16 29 C -0.13 -0.81 7.39 -25.91 -0.19 -1.00 16 30 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.40 4.00 8.47 -40.82 -0.35 3.66 16 34 H 0.07 0.77 7.84 -51.92 -0.41 0.36 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 38 H 0.41 2.50 8.43 -40.82 -0.34 2.16 16 39 H 0.23 -0.32 8.06 -52.49 -0.42 -0.75 16 40 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -41.13 374.88 -10.60 -51.73 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.52 Total: -1.55 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.22 Total: -1.28 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.56 Total: -48.24 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -41.13 -10.60 -51.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702493222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.830 kcal (2) G-P(sol) polarization free energy of solvation -41.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds