Wall clock time and date at job start Tue Mar 31 2020 22:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33325 * 126.81279 * 2 1 4 4 N 1.28514 * 109.43650 * 180.02562 * 3 2 1 5 5 N 1.28711 * 110.64209 * 359.97438 * 4 3 2 6 6 H 0.96993 * 126.03582 * 180.02562 * 5 4 3 7 7 C 1.37005 * 126.81553 * 180.32387 * 2 1 3 8 8 C 1.47231 * 127.19116 * 0.02562 * 7 2 1 9 9 O 1.21623 * 119.99702 * 6.36140 * 8 7 2 10 10 N 1.34778 * 120.00456 * 186.37123 * 8 7 2 11 11 C 1.47427 * 125.64468 * 5.24953 * 10 8 7 12 12 C 1.55126 * 104.71806 * 155.82143 * 11 10 8 13 13 C 1.55156 * 101.48815 * 37.29918 * 12 11 10 14 14 H 1.08998 * 110.72333 * 82.69470 * 13 12 11 15 15 N 1.46499 * 110.86968 * 205.89849 * 13 12 11 16 16 C 1.34778 * 119.99733 * 200.06383 * 15 13 12 17 17 O 1.21284 * 120.00194 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00015 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.47118 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00013 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99797 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00103 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99971 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99900 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47281 * 89.99742 * 24 22 20 26 26 H 1.48500 * 109.47048 * 209.99773 * 24 22 20 27 27 H 1.48498 * 109.46957 * 329.99775 * 24 22 20 28 28 C 1.47020 * 125.65159 * 185.56433 * 10 8 7 29 29 H 1.08999 * 109.47322 * 89.98159 * 1 2 3 30 30 H 1.08996 * 109.47096 * 209.98323 * 1 2 3 31 31 H 1.08996 * 109.47342 * 329.98119 * 1 2 3 32 32 H 1.08996 * 110.37059 * 274.75250 * 11 10 8 33 33 H 1.09006 * 110.36550 * 37.07479 * 11 10 8 34 34 H 1.08998 * 111.19505 * 279.18703 * 12 11 10 35 35 H 1.09001 * 110.93440 * 155.29462 * 12 11 10 36 36 H 0.96996 * 120.00260 * 20.06155 * 15 13 12 37 37 H 1.09002 * 109.46772 * 299.99395 * 18 16 15 38 38 H 1.08999 * 109.47080 * 59.99648 * 18 16 15 39 39 H 0.97010 * 119.99623 * 180.02562 * 23 22 20 40 40 H 1.08997 * 109.88310 * 300.43782 * 28 10 8 41 41 H 1.09000 * 109.87930 * 61.44351 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 -0.0005 5 7 3.6057 -0.6014 -0.0004 6 1 4.4212 -1.1264 -0.0003 7 6 2.3280 -1.0968 -0.0062 8 6 1.9223 -2.5121 -0.0147 9 8 0.7485 -2.8075 -0.1336 10 7 2.8516 -3.4803 0.1094 11 6 4.2869 -3.2654 0.3689 12 6 4.7706 -4.5850 1.0255 13 6 3.9499 -5.6407 0.2384 14 1 4.4332 -5.8763 -0.7097 15 7 3.7591 -6.8544 1.0364 16 6 3.4441 -8.0165 0.4308 17 8 3.3182 -8.0574 -0.7748 18 6 3.2472 -9.2648 1.2517 19 16 2.8358 -10.6473 0.1582 20 6 2.6660 -11.9372 1.3465 21 1 2.8143 -11.7279 2.3955 22 6 2.3427 -13.2225 0.9341 23 7 2.2163 -14.1862 1.8218 24 14 2.0868 -13.5846 -0.8805 25 1 3.3802 -13.9806 -1.4934 26 1 1.1082 -14.6913 -1.0312 27 1 1.5687 -12.3698 -1.5594 28 6 2.6031 -4.9254 0.0020 29 1 -0.3634 0.0003 -1.0276 30 1 -0.3633 -0.8901 0.5136 31 1 -0.3634 0.8898 0.5141 32 1 4.8188 -3.0867 -0.5655 33 1 4.4275 -2.4282 1.0526 34 1 4.5241 -4.6105 2.0869 35 1 5.8402 -4.7274 0.8715 36 1 3.8595 -6.8216 2.0006 37 1 4.1649 -9.4911 1.7945 38 1 2.4345 -9.1088 1.9610 39 1 1.9907 -15.0846 1.5335 40 1 1.8814 -5.2346 0.7580 41 1 2.2237 -5.1634 -0.9917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703439826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:03 Heat of formation + Delta-G solvation = 6.644976 kcal Electronic energy + Delta-G solvation = -26029.016027 eV Core-core repulsion = 22071.606916 eV Total energy + Delta-G solvation = -3957.409110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.60349 -41.48879 -40.48438 -38.70521 -35.77532 -34.95080 -34.66719 -33.64235 -32.29881 -30.89087 -29.64568 -28.68648 -27.83908 -26.07557 -24.25134 -23.45805 -22.39568 -21.76668 -21.34496 -19.94093 -19.23099 -18.25935 -18.07532 -17.76918 -17.46142 -17.18470 -17.05766 -16.59584 -16.37155 -15.72401 -15.29938 -15.02440 -14.92319 -14.71480 -14.61709 -14.31028 -14.05656 -13.85644 -13.72408 -13.52507 -13.35019 -13.16494 -13.05945 -13.01847 -12.74618 -12.60966 -12.32682 -12.00871 -11.87132 -11.70538 -11.47590 -11.17025 -11.05409 -10.55479 -10.52938 -10.30887 -9.97155 -8.98930 -8.51494 -6.21896 -0.34498 0.97969 1.03240 1.17928 1.31151 1.44285 1.49334 1.53395 1.64083 1.76535 2.21844 2.25908 2.71436 2.86954 2.95472 3.18060 3.23860 3.49155 3.64784 3.81263 3.87230 3.95413 4.02939 4.07309 4.22414 4.25768 4.48957 4.52979 4.63011 4.65400 4.71290 4.79426 4.87236 4.94935 5.01872 5.22999 5.38270 5.53469 5.70744 6.03259 6.11910 6.41099 6.64713 6.93964 7.05590 7.14968 8.60661 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.001966 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.241564 B =14238.838993 C =14692.313063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.053 3.947 3 N -0.293 5.293 4 N -0.050 5.050 5 N -0.353 5.353 6 H 0.465 0.535 7 C -0.068 4.068 8 C 0.609 3.391 9 O -0.543 6.543 10 N -0.609 5.609 11 C 0.071 3.929 12 C -0.118 4.118 13 C 0.138 3.862 14 H 0.102 0.898 15 N -0.702 5.702 16 C 0.539 3.461 17 O -0.556 6.556 18 C -0.113 4.113 19 S -0.177 6.177 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.261 1.261 26 H -0.262 1.262 27 H -0.237 1.237 28 C 0.098 3.902 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.421 0.579 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.276 0.724 40 H 0.067 0.933 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 29.354 -0.111 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 N -0.159 5.159 4 N -0.032 5.032 5 N -0.088 5.088 6 H 0.321 0.679 7 C -0.202 4.202 8 C 0.396 3.604 9 O -0.419 6.419 10 N -0.343 5.343 11 C -0.051 4.051 12 C -0.156 4.156 13 C 0.032 3.968 14 H 0.120 0.880 15 N -0.356 5.356 16 C 0.325 3.675 17 O -0.433 6.433 18 C -0.264 4.264 19 S 0.049 5.951 20 C -0.675 4.675 21 H 0.082 0.918 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.186 1.186 26 H -0.186 1.186 27 H -0.161 1.161 28 C -0.026 4.026 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.260 0.740 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.452 30.353 -2.111 31.325 hybrid contribution -0.232 -2.114 1.343 2.515 sum 7.220 28.239 -0.768 29.157 Atomic orbital electron populations 1.20351 0.83885 1.04623 1.04449 1.22701 0.99542 0.86971 0.99515 1.74982 0.95628 1.26602 1.18659 1.78130 1.15752 0.93231 1.16090 1.46012 1.09059 1.06459 1.47264 0.67944 1.21742 0.85710 0.95324 1.17451 1.16428 0.84654 0.82150 0.77171 1.90874 1.17909 1.82091 1.51025 1.48266 1.09660 1.06052 1.70322 1.23067 0.79069 1.00420 1.02550 1.23130 1.02212 0.89626 1.00654 1.21949 0.93647 0.84056 0.97129 0.88047 1.45619 1.71652 1.06610 1.11734 1.19963 0.75233 0.84670 0.87646 1.90718 1.50755 1.85877 1.15998 1.23281 1.07032 0.94229 1.01830 1.84741 1.92134 1.03604 1.14617 1.22462 1.54692 0.95670 0.94700 0.91835 1.25571 0.93304 0.94994 1.02252 1.70019 1.47207 1.02311 1.35929 0.85872 0.79804 0.80450 0.80278 1.18605 1.18627 1.16077 1.22384 0.99274 0.78821 1.02093 0.89187 0.89747 0.88767 0.87249 0.88138 0.87764 0.85227 0.74035 0.86383 0.86909 0.91425 0.91419 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 9.87 71.23 0.70 -0.45 16 2 C 0.05 0.99 7.29 42.04 0.31 1.29 16 3 N -0.29 -5.93 12.35 -47.88 -0.59 -6.52 16 4 N -0.05 -0.84 13.35 37.02 0.49 -0.34 16 5 N -0.35 -3.74 6.36 -48.52 -0.31 -4.05 16 6 H 0.47 1.02 5.53 -219.91 -1.22 -0.19 16 7 C -0.07 -1.09 6.91 40.40 0.28 -0.81 16 8 C 0.61 11.41 7.83 86.61 0.68 12.09 16 9 O -0.54 -14.40 15.42 -4.10 -0.06 -14.47 16 10 N -0.61 -8.08 3.32 -815.45 -2.71 -10.79 16 11 C 0.07 0.20 5.31 86.93 0.46 0.66 16 12 C -0.12 -0.30 6.71 32.06 0.22 -0.09 16 13 C 0.14 1.79 3.23 46.18 0.15 1.94 16 14 H 0.10 1.59 7.69 -2.39 -0.02 1.57 16 15 N -0.70 -11.72 5.13 -436.92 -2.24 -13.96 16 16 C 0.54 15.67 7.84 87.66 0.69 16.36 16 17 O -0.56 -21.01 15.59 -3.04 -0.05 -21.05 16 18 C -0.11 -3.80 6.16 71.24 0.44 -3.36 16 19 S -0.18 -8.55 18.55 -56.49 -1.05 -9.60 16 20 C -0.53 -29.81 10.04 67.95 0.68 -29.12 16 21 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 22 C 0.04 2.54 5.50 84.86 0.47 3.01 16 23 N -0.92 -54.96 13.97 21.65 0.30 -54.65 16 24 Si 0.91 44.19 27.74 68.60 1.90 46.09 16 25 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.43 6.74 99.48 0.67 -10.76 16 28 C 0.10 1.74 6.62 86.73 0.57 2.31 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.45 6.78 -2.39 -0.02 1.44 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 -0.16 7.92 -2.39 -0.02 -0.18 16 33 H 0.10 -0.12 6.19 -2.38 -0.01 -0.14 16 34 H 0.10 0.08 8.01 -2.39 -0.02 0.06 16 35 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.42 4.24 8.53 -92.71 -0.79 3.45 16 37 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 39 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 40 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.31 359.90 0.39 -82.92 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -0.94 Total: 2.58 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.64 Total: 3.84 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -5.06 Total: -90.32 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.11 Total: -35.52 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.05 Total: -9.60 kcal Total: -83.31 0.39 -82.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703439826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.562 kcal (2) G-P(sol) polarization free energy of solvation -83.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds