Wall clock time and date at job start Tue Mar 31 2020 22:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48498 * 109.47092 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47486 * 119.99753 * 3 2 1 6 6 H 1.48497 * 109.47219 * 239.99680 * 3 2 1 7 7 C 1.38804 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00028 * 180.02562 * 7 2 1 9 9 S 1.76191 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99959 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47419 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99744 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00001 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.49740 * 34.93023 * 14 13 11 16 16 C 1.53041 * 109.49881 * 155.00006 * 14 13 11 17 17 C 1.53044 * 109.53439 * 181.31636 * 16 14 13 18 18 C 1.53195 * 109.31221 * 298.63227 * 17 16 14 19 19 N 1.46920 * 108.77404 * 54.63974 * 18 17 16 20 20 C 1.34777 * 120.62988 * 126.37448 * 19 18 17 21 21 O 1.21623 * 119.99900 * 179.80502 * 20 19 18 22 22 C 1.47235 * 120.00157 * 359.79709 * 20 19 18 23 23 C 1.37001 * 127.19288 * 208.43982 * 22 20 19 24 24 N 1.33314 * 106.37260 * 179.97438 * 23 22 20 25 25 N 1.28515 * 109.44036 * 359.97438 * 24 23 22 26 26 N 1.28711 * 110.63636 * 359.75630 * 25 24 23 27 27 H 0.97001 * 126.03063 * 180.26118 * 26 25 24 28 28 C 1.46922 * 118.73989 * 306.38590 * 19 18 17 29 29 H 0.97002 * 119.99918 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47172 * 299.99839 * 10 9 7 31 31 H 1.08994 * 109.47355 * 59.99848 * 10 9 7 32 32 H 0.96994 * 119.99751 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.45540 * 301.33413 * 16 14 13 34 34 H 1.08989 * 109.45848 * 61.29549 * 16 14 13 35 35 H 1.08995 * 109.50096 * 58.58699 * 17 16 14 36 36 H 1.09003 * 109.49325 * 178.68461 * 17 16 14 37 37 H 1.08997 * 109.58378 * 174.42697 * 18 17 16 38 38 H 1.09008 * 109.58547 * 294.70681 * 18 17 16 39 39 H 1.07996 * 126.81070 * 359.93264 * 23 22 20 40 40 H 1.09005 * 109.59068 * 293.82966 * 28 19 18 41 41 H 1.08997 * 109.58897 * 173.39877 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6963 -1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3302 -7.7151 -0.0009 15 1 1.4144 -7.7601 -0.5902 16 6 3.3762 -8.6517 -0.6099 17 6 2.8274 -10.0800 -0.6416 18 6 2.5382 -10.5436 0.7896 19 7 1.6459 -9.5686 1.4312 20 6 0.4920 -9.9661 2.0028 21 8 -0.2364 -9.1496 2.5339 22 6 0.1130 -11.3887 1.9843 23 6 -1.1545 -11.9084 1.9999 24 7 -1.0175 -13.2342 1.9723 25 7 0.2317 -13.5345 1.9411 26 7 0.9544 -12.4695 1.9411 27 1 1.9236 -12.4376 1.9172 28 6 2.0354 -8.1519 1.4376 29 1 -0.4850 0.8401 -0.0004 30 1 3.1243 -3.7314 -0.8895 31 1 3.1243 -3.7314 0.8904 32 1 3.8007 -6.1835 0.0006 33 1 3.6059 -8.3283 -1.6251 34 1 4.2833 -8.6245 -0.0063 35 1 1.9068 -10.1032 -1.2246 36 1 3.5637 -10.7425 -1.0968 37 1 2.0558 -11.5207 0.7667 38 1 3.4722 -10.6102 1.3478 39 1 -2.0809 -11.3540 2.0294 40 1 2.9280 -8.0210 2.0494 41 1 1.2211 -7.5509 1.8423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703525726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:48 Heat of formation + Delta-G solvation = 43.696701 kcal Electronic energy + Delta-G solvation = -26412.516681 eV Core-core repulsion = 22456.714254 eV Total energy + Delta-G solvation = -3955.802427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.91312 -40.72556 -39.29515 -37.76119 -35.10235 -33.91651 -32.81378 -32.44910 -31.97549 -30.72577 -28.52317 -26.69566 -25.51579 -24.16701 -24.02211 -23.10632 -21.76563 -20.68087 -20.43599 -18.58718 -17.90072 -17.59139 -16.93893 -16.75922 -16.39420 -16.02599 -15.56819 -15.13913 -14.91560 -14.82340 -14.69230 -14.45349 -14.06710 -13.95066 -13.52800 -13.35903 -13.16392 -12.67005 -12.61302 -12.32585 -11.99499 -11.83288 -11.64150 -11.56550 -11.09007 -11.07793 -11.05855 -11.05217 -10.78770 -10.64064 -9.98941 -9.85242 -9.59451 -9.45006 -9.08196 -8.92287 -8.26758 -6.52709 -6.23324 -3.94497 0.45134 1.78634 1.88793 2.15271 2.59073 2.95181 2.99443 3.21797 3.25419 3.28268 3.57751 3.62106 3.99011 4.05315 4.18247 4.19426 4.27684 4.49899 4.50878 4.62603 4.70612 4.79860 4.89734 5.07597 5.11173 5.11694 5.24155 5.40435 5.44438 5.54066 5.57959 5.71471 5.73730 5.82841 5.88323 6.03313 6.08091 6.47258 6.66821 7.48101 7.55647 7.57685 7.78431 8.32752 8.50149 9.21657 10.83978 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025555 B = 0.002126 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.405307 B =13167.382767 C =13954.116128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.509 6.509 13 N -0.734 5.734 14 C 0.134 3.866 15 H 0.094 0.906 16 C -0.128 4.128 17 C -0.130 4.130 18 C 0.086 3.914 19 N -0.604 5.604 20 C 0.592 3.408 21 O -0.496 6.496 22 C -0.059 4.059 23 C 0.032 3.968 24 N -0.265 5.265 25 N -0.052 5.052 26 N -0.381 5.381 27 H 0.452 0.548 28 C 0.102 3.898 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.206 0.794 40 H 0.076 0.924 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 -25.617 0.700 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.382 6.382 13 N -0.389 5.389 14 C 0.028 3.972 15 H 0.112 0.888 16 C -0.166 4.166 17 C -0.168 4.168 18 C -0.038 4.038 19 N -0.338 5.338 20 C 0.377 3.623 21 O -0.368 6.368 22 C -0.193 4.193 23 C -0.127 4.127 24 N -0.131 5.131 25 N -0.034 5.034 26 N -0.113 5.113 27 H 0.304 0.696 28 C -0.021 4.021 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.234 0.766 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.223 0.777 40 H 0.094 0.906 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.352 -26.885 0.985 28.169 hybrid contribution 3.201 2.477 -0.047 4.047 sum 11.553 -24.408 0.938 27.020 Atomic orbital electron populations 1.70002 1.05952 1.27621 1.46598 1.24995 0.95033 0.99040 0.94515 0.86223 0.79237 0.81251 0.78774 1.20798 1.19936 1.19956 1.22816 0.94846 0.91657 1.59243 0.90976 1.85458 1.04677 0.96294 1.96726 1.23531 1.06716 0.95189 1.04964 1.20416 0.86595 0.86338 0.74888 1.90743 1.15262 1.85422 1.46728 1.45978 1.10040 1.04644 1.78210 1.21140 0.98651 0.81700 0.95718 0.88772 1.21824 0.98247 0.94062 1.02481 1.21858 1.02731 0.96817 0.95432 1.22217 0.94569 0.91890 0.95098 1.47932 1.20437 1.08991 1.56472 1.16850 0.81247 0.84958 0.79289 1.90958 1.50315 1.52068 1.43427 1.22334 0.92042 0.89899 1.14985 1.23973 0.97511 0.90607 1.00580 1.75013 1.07982 1.13586 1.16495 1.78219 0.98312 1.10386 1.16455 1.46361 1.11711 1.04315 1.48912 0.69577 1.22203 1.02610 0.79627 0.97696 0.92079 0.89178 0.89136 0.76574 0.90175 0.90840 0.90583 0.89529 0.90475 0.89854 0.77740 0.90627 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 11 C 0.53 9.21 7.82 -10.98 -0.09 9.13 16 12 O -0.51 -11.11 15.53 5.55 0.09 -11.02 16 13 N -0.73 -8.32 5.08 -53.68 -0.27 -8.59 16 14 C 0.13 1.31 2.60 -67.81 -0.18 1.14 16 15 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 16 C -0.13 -0.70 5.35 -26.69 -0.14 -0.84 16 17 C -0.13 -0.53 6.08 -26.61 -0.16 -0.69 16 18 C 0.09 0.33 5.66 -3.71 -0.02 0.31 16 19 N -0.60 -4.94 2.97 -174.11 -0.52 -5.46 16 20 C 0.59 6.34 7.66 -12.60 -0.10 6.24 16 21 O -0.50 -7.55 16.44 5.26 0.09 -7.46 16 22 C -0.06 -0.51 6.48 -82.33 -0.53 -1.05 16 23 C 0.03 0.31 11.97 -17.36 -0.21 0.10 16 24 N -0.27 -2.81 12.35 30.47 0.38 -2.43 16 25 N -0.05 -0.47 13.35 60.35 0.81 0.33 16 26 N -0.38 -2.41 5.77 33.31 0.19 -2.22 16 27 H 0.45 1.17 6.48 -190.33 -1.23 -0.07 16 28 C 0.10 1.03 6.01 -3.71 -0.02 1.01 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 31 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 32 H 0.40 3.23 8.60 -40.82 -0.35 2.88 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.28 8.14 -51.94 -0.42 -0.14 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.08 0.22 3.82 -51.93 -0.20 0.03 16 38 H 0.08 0.13 8.14 -51.92 -0.42 -0.29 16 39 H 0.21 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 1.56 7.00 -51.93 -0.36 1.20 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -38.20 359.72 -7.24 -45.44 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.89 Total: -0.95 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.03 Total: -0.16 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 1.32 Total: -43.65 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.17 Total: -18.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.20 -7.24 -45.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703525726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.135 kcal (2) G-P(sol) polarization free energy of solvation -38.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds