Wall clock time and date at job start Tue Mar 31 2020 22:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48498 * 109.47092 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47486 * 119.99753 * 3 2 1 6 6 H 1.48497 * 109.47219 * 239.99680 * 3 2 1 7 7 C 1.38804 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00028 * 180.02562 * 7 2 1 9 9 S 1.76191 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99959 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47419 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99744 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00001 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.49740 * 34.93023 * 14 13 11 16 16 C 1.53041 * 109.49881 * 155.00006 * 14 13 11 17 17 C 1.53044 * 109.53439 * 181.31636 * 16 14 13 18 18 C 1.53195 * 109.31221 * 298.63227 * 17 16 14 19 19 N 1.46920 * 108.77404 * 54.63974 * 18 17 16 20 20 C 1.34777 * 120.62988 * 126.37448 * 19 18 17 21 21 O 1.21623 * 119.99900 * 179.80502 * 20 19 18 22 22 C 1.47235 * 120.00157 * 359.79709 * 20 19 18 23 23 C 1.37001 * 127.19288 * 208.43982 * 22 20 19 24 24 N 1.33314 * 106.37260 * 179.97438 * 23 22 20 25 25 N 1.28515 * 109.44036 * 359.97438 * 24 23 22 26 26 N 1.28711 * 110.63636 * 359.75630 * 25 24 23 27 27 H 0.97001 * 126.03063 * 180.26118 * 26 25 24 28 28 C 1.46922 * 118.73989 * 306.38590 * 19 18 17 29 29 H 0.97002 * 119.99918 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47172 * 299.99839 * 10 9 7 31 31 H 1.08994 * 109.47355 * 59.99848 * 10 9 7 32 32 H 0.96994 * 119.99751 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.45540 * 301.33413 * 16 14 13 34 34 H 1.08989 * 109.45848 * 61.29549 * 16 14 13 35 35 H 1.08995 * 109.50096 * 58.58699 * 17 16 14 36 36 H 1.09003 * 109.49325 * 178.68461 * 17 16 14 37 37 H 1.08997 * 109.58378 * 174.42697 * 18 17 16 38 38 H 1.09008 * 109.58547 * 294.70681 * 18 17 16 39 39 H 1.07996 * 126.81070 * 359.93264 * 23 22 20 40 40 H 1.09005 * 109.59068 * 293.82966 * 28 19 18 41 41 H 1.08997 * 109.58897 * 173.39877 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6963 -1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3302 -7.7151 -0.0009 15 1 1.4144 -7.7601 -0.5902 16 6 3.3762 -8.6517 -0.6099 17 6 2.8274 -10.0800 -0.6416 18 6 2.5382 -10.5436 0.7896 19 7 1.6459 -9.5686 1.4312 20 6 0.4920 -9.9661 2.0028 21 8 -0.2364 -9.1496 2.5339 22 6 0.1130 -11.3887 1.9843 23 6 -1.1545 -11.9084 1.9999 24 7 -1.0175 -13.2342 1.9723 25 7 0.2317 -13.5345 1.9411 26 7 0.9544 -12.4695 1.9411 27 1 1.9236 -12.4376 1.9172 28 6 2.0354 -8.1519 1.4376 29 1 -0.4850 0.8401 -0.0004 30 1 3.1243 -3.7314 -0.8895 31 1 3.1243 -3.7314 0.8904 32 1 3.8007 -6.1835 0.0006 33 1 3.6059 -8.3283 -1.6251 34 1 4.2833 -8.6245 -0.0063 35 1 1.9068 -10.1032 -1.2246 36 1 3.5637 -10.7425 -1.0968 37 1 2.0558 -11.5207 0.7667 38 1 3.4722 -10.6102 1.3478 39 1 -2.0809 -11.3540 2.0294 40 1 2.9280 -8.0210 2.0494 41 1 1.2211 -7.5509 1.8423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703525726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:48 Heat of formation + Delta-G solvation = 12.368824 kcal Electronic energy + Delta-G solvation = -26413.875159 eV Core-core repulsion = 22456.714254 eV Total energy + Delta-G solvation = -3957.160906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.61612 -41.55780 -40.51351 -38.65371 -36.06751 -34.72414 -34.58246 -33.51829 -32.71409 -31.79414 -29.74208 -27.66118 -27.36610 -24.84821 -24.74596 -23.80344 -22.47413 -21.73195 -21.35844 -19.82152 -19.25066 -18.31918 -17.84974 -17.68661 -17.60430 -17.00099 -16.87602 -16.54303 -16.10458 -15.82362 -15.69836 -15.40646 -15.23268 -14.86456 -14.52179 -14.42713 -14.22962 -13.90941 -13.59760 -13.38525 -13.16978 -12.87012 -12.79144 -12.63366 -12.54114 -12.25909 -12.11644 -11.80706 -11.73295 -11.67971 -11.49975 -11.12754 -10.96395 -10.75832 -10.47740 -10.26662 -9.80339 -8.67209 -8.34248 -6.12783 -0.27140 1.05279 1.16451 1.27872 1.40875 1.44050 1.48963 1.56948 1.62787 1.87598 2.26283 2.29924 2.95734 2.99824 3.31763 3.38204 3.56409 3.64905 3.76980 3.79365 3.87531 3.97045 4.01154 4.12565 4.30557 4.32390 4.42272 4.51482 4.64638 4.68264 4.73823 4.83396 4.96483 5.09006 5.13015 5.26425 5.41569 5.46087 5.54472 5.95774 6.19634 6.49527 6.68593 7.06656 7.06739 7.24330 8.74677 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025555 B = 0.002126 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.405307 B =13167.382767 C =13954.116128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 0.999 3.001 4 H -0.281 1.281 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.159 6.159 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.704 5.704 14 C 0.135 3.865 15 H 0.056 0.944 16 C -0.118 4.118 17 C -0.127 4.127 18 C 0.079 3.921 19 N -0.595 5.595 20 C 0.591 3.409 21 O -0.555 6.555 22 C -0.056 4.056 23 C 0.023 3.977 24 N -0.291 5.291 25 N -0.053 5.053 26 N -0.350 5.350 27 H 0.470 0.530 28 C 0.105 3.895 29 H 0.271 0.729 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.422 0.578 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.211 0.789 40 H 0.105 0.895 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.743 -27.111 0.288 31.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.821 3.179 4 H -0.206 1.206 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.068 5.932 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.441 6.441 13 N -0.359 5.359 14 C 0.028 3.972 15 H 0.074 0.926 16 C -0.156 4.156 17 C -0.165 4.165 18 C -0.042 4.042 19 N -0.328 5.328 20 C 0.376 3.624 21 O -0.431 6.431 22 C -0.191 4.191 23 C -0.136 4.136 24 N -0.155 5.155 25 N -0.035 5.035 26 N -0.086 5.086 27 H 0.326 0.674 28 C -0.018 4.018 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.260 0.740 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.105 0.895 38 H 0.144 0.856 39 H 0.228 0.772 40 H 0.123 0.877 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.140 -28.456 0.544 31.348 hybrid contribution 1.844 2.795 0.057 3.349 sum 14.984 -25.661 0.601 29.721 Atomic orbital electron populations 1.70187 1.08062 1.28647 1.47995 1.26165 0.95963 1.03456 0.93793 0.84990 0.77766 0.75591 0.79563 1.20620 1.18578 1.18495 1.23170 0.95372 0.91864 1.58855 0.89664 1.85700 1.10871 0.99529 1.97071 1.23363 1.03406 0.94066 1.07043 1.20175 0.86281 0.86909 0.74772 1.90739 1.17720 1.86031 1.49642 1.45647 1.10424 1.04130 1.75656 1.21274 0.99061 0.81400 0.95422 0.92601 1.21833 0.97585 0.93314 1.02861 1.21899 1.02873 0.96540 0.95225 1.22649 0.95327 0.90873 0.95399 1.48010 1.20148 1.09072 1.55529 1.17083 0.81322 0.85172 0.78833 1.90935 1.52275 1.53606 1.46255 1.21949 0.92198 0.89347 1.15593 1.24195 0.98381 0.90574 1.00488 1.75015 1.08763 1.13973 1.17788 1.78148 0.98200 1.10849 1.16345 1.46296 1.12374 1.02896 1.47057 0.67355 1.22027 1.01721 0.80178 0.97917 0.92053 0.86865 0.86933 0.73961 0.89673 0.87508 0.92633 0.85757 0.89515 0.85612 0.77223 0.87675 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 2 C 0.01 0.62 5.49 84.86 0.47 1.08 16 3 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.54 -30.82 9.50 67.96 0.65 -30.17 16 8 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.16 -8.80 20.57 -56.49 -1.16 -9.96 16 10 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16 11 C 0.53 18.60 7.82 87.66 0.69 19.29 16 12 O -0.56 -26.12 15.53 -3.04 -0.05 -26.17 16 13 N -0.70 -14.75 5.08 -442.15 -2.25 -17.00 16 14 C 0.13 2.47 2.60 45.07 0.12 2.58 16 15 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 16 C -0.12 -0.80 5.35 30.62 0.16 -0.63 16 17 C -0.13 -0.50 6.08 30.67 0.19 -0.32 16 18 C 0.08 0.29 5.66 86.36 0.49 0.78 16 19 N -0.59 -8.97 2.97 -823.00 -2.45 -11.41 16 20 C 0.59 12.89 7.66 86.61 0.66 13.55 16 21 O -0.55 -18.27 16.44 -4.10 -0.07 -18.33 16 22 C -0.06 -0.96 6.48 40.41 0.26 -0.69 16 23 C 0.02 0.45 11.97 84.18 1.01 1.45 16 24 N -0.29 -6.05 12.35 -57.51 -0.71 -6.76 16 25 N -0.05 -0.89 13.35 37.02 0.49 -0.39 16 26 N -0.35 -3.69 5.77 -48.52 -0.28 -3.97 16 27 H 0.47 0.75 6.48 -219.90 -1.42 -0.68 16 28 C 0.11 2.06 6.01 86.37 0.52 2.58 16 29 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 31 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 32 H 0.42 5.24 8.60 -92.71 -0.80 4.44 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.09 0.16 3.82 -2.39 -0.01 0.15 16 38 H 0.13 -0.43 8.14 -2.38 -0.02 -0.45 16 39 H 0.21 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.06 1.74 7.00 -2.39 -0.02 1.72 16 Total: -1.00 -92.05 359.72 0.37 -91.67 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -1.12 Total: 8.00 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.64 Total: 5.14 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.90 Total: -95.68 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.11 Total: -44.50 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -92.05 0.37 -91.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703525726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.043 kcal (2) G-P(sol) polarization free energy of solvation -92.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds