Wall clock time and date at job start Tue Mar 31 2020 22:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33320 * 126.81378 * 2 1 4 4 N 1.28509 * 109.43999 * 180.02562 * 3 2 1 5 5 N 1.28716 * 110.64193 * 359.97438 * 4 3 2 6 6 H 0.96997 * 126.03741 * 179.97438 * 5 4 3 7 7 C 1.37010 * 126.81275 * 179.68791 * 2 1 3 8 8 C 1.47230 * 127.18981 * 359.97438 * 7 2 1 9 9 O 1.21612 * 120.00287 * 354.63033 * 8 7 2 10 10 N 1.34778 * 119.99569 * 174.62861 * 8 7 2 11 11 C 1.47429 * 125.64336 * 185.07848 * 10 8 7 12 12 C 1.54912 * 104.83108 * 204.09127 * 11 10 8 13 13 C 1.55158 * 101.58223 * 322.99241 * 12 11 10 14 14 H 1.08996 * 110.72004 * 277.13930 * 13 12 11 15 15 N 1.46496 * 110.71904 * 154.03924 * 13 12 11 16 16 C 1.34775 * 119.99920 * 154.99779 * 15 13 12 17 17 O 1.21286 * 120.00000 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00111 * 180.02562 * 16 15 13 19 19 S 1.80996 * 109.47168 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00079 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99908 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00161 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00252 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99957 * 24 22 20 26 26 H 1.48502 * 109.46929 * 209.99848 * 24 22 20 27 27 H 1.48500 * 109.46926 * 329.99920 * 24 22 20 28 28 C 1.47015 * 125.65123 * 4.77297 * 10 8 7 29 29 H 1.08998 * 109.46990 * 90.02572 * 1 2 3 30 30 H 1.09004 * 109.46876 * 210.02619 * 1 2 3 31 31 H 1.08996 * 109.47192 * 330.02371 * 1 2 3 32 32 H 1.08998 * 110.37142 * 322.93522 * 11 10 8 33 33 H 1.09009 * 110.36397 * 85.25894 * 11 10 8 34 34 H 1.09000 * 111.00212 * 81.06958 * 12 11 10 35 35 H 1.09005 * 111.00026 * 204.91710 * 12 11 10 36 36 H 0.97001 * 120.00071 * 335.00709 * 15 13 12 37 37 H 1.08996 * 109.47199 * 300.00746 * 18 16 15 38 38 H 1.08998 * 109.46916 * 60.00508 * 18 16 15 39 39 H 0.96992 * 120.00015 * 180.02562 * 23 22 20 40 40 H 1.08996 * 109.88680 * 298.39273 * 28 10 8 41 41 H 1.09000 * 109.88552 * 59.56297 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6057 -0.6015 -0.0004 6 1 4.4213 -1.1265 -0.0010 7 6 2.3280 -1.0969 0.0060 8 6 1.9222 -2.5121 0.0142 9 8 0.7467 -2.8072 0.1149 10 7 2.8536 -3.4807 -0.0899 11 6 2.5819 -4.9255 -0.2009 12 6 3.8682 -5.6122 0.3222 13 6 4.9699 -4.6620 -0.2170 14 1 5.2093 -4.8981 -1.2538 15 7 6.1706 -4.7332 0.6194 16 6 7.3735 -4.4180 0.0997 17 8 7.4619 -4.0748 -1.0602 18 6 8.6087 -4.4918 0.9599 19 16 10.0542 -4.0114 -0.0176 20 6 11.3173 -4.1839 1.1988 21 1 11.0640 -4.5046 2.1985 22 6 12.6375 -3.9066 0.8725 23 7 12.9462 -3.5152 -0.3458 24 14 13.9765 -4.0888 2.1624 25 1 14.5172 -5.4713 2.1226 26 1 15.0684 -3.1220 1.8823 27 1 13.4083 -3.8179 3.5073 28 6 4.3084 -3.2711 -0.1178 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 1.7272 -5.1995 0.4176 33 1 2.4020 -5.1988 -1.2407 34 1 3.8786 -5.6441 1.4117 35 1 3.9753 -6.6126 -0.0975 36 1 6.0998 -5.0074 1.5471 37 1 8.5023 -3.8147 1.8075 38 1 8.7379 -5.5112 1.3234 39 1 13.8689 -3.3218 -0.5739 40 1 4.5794 -2.6671 -0.9837 41 1 4.6292 -2.7747 0.7981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703893598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:07 Heat of formation + Delta-G solvation = 33.146177 kcal Electronic energy + Delta-G solvation = -26314.776802 eV Core-core repulsion = 22358.516870 eV Total energy + Delta-G solvation = -3956.259932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.75428 -40.70922 -39.43053 -37.83267 -34.72167 -34.12491 -32.92663 -32.52212 -31.40068 -29.94851 -28.44420 -28.08406 -25.60727 -25.24934 -23.51343 -22.60119 -21.59712 -20.80579 -20.53405 -18.49056 -18.01968 -17.40002 -17.24663 -16.79533 -16.49389 -16.32189 -15.45556 -15.22161 -14.88754 -14.62835 -14.22670 -14.19119 -13.93916 -13.52404 -13.46435 -13.37614 -13.08287 -13.01468 -12.76329 -12.48759 -12.35553 -12.20698 -11.97619 -11.54326 -11.41038 -11.14628 -11.11522 -10.90497 -10.84863 -10.63040 -9.92780 -9.72456 -9.71259 -9.40330 -9.27617 -9.15128 -8.37735 -6.62466 -6.31176 -4.03239 0.48228 1.91182 1.95299 2.26652 2.55980 2.74197 2.79068 3.16038 3.19476 3.24124 3.45361 3.67819 3.89198 3.90517 4.10938 4.13896 4.37635 4.46646 4.52030 4.65751 4.70843 4.80940 4.89901 5.04533 5.17752 5.23278 5.26155 5.32507 5.35772 5.42827 5.52085 5.55372 5.64636 5.70143 5.91389 5.96613 6.20224 6.22844 6.69865 7.34089 7.39609 7.50475 7.93124 8.25414 8.27850 9.14512 10.76187 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002331 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.419739 B =12006.869284 C =13180.858014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.271 5.271 4 N -0.037 5.037 5 N -0.375 5.375 6 H 0.452 0.548 7 C -0.077 4.077 8 C 0.617 3.383 9 O -0.511 6.511 10 N -0.614 5.614 11 C 0.110 3.890 12 C -0.140 4.140 13 C 0.144 3.856 14 H 0.115 0.885 15 N -0.731 5.731 16 C 0.533 3.467 17 O -0.511 6.511 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.538 4.538 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.272 1.272 28 C 0.065 3.935 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.403 0.597 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.269 0.731 40 H 0.080 0.920 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.686 -2.557 2.992 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 N -0.137 5.137 4 N -0.019 5.019 5 N -0.107 5.107 6 H 0.304 0.696 7 C -0.210 4.210 8 C 0.403 3.597 9 O -0.384 6.384 10 N -0.350 5.350 11 C -0.012 4.012 12 C -0.178 4.178 13 C 0.037 3.963 14 H 0.132 0.868 15 N -0.386 5.386 16 C 0.320 3.680 17 O -0.384 6.384 18 C -0.306 4.306 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.060 4.060 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.238 0.762 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.382 -0.659 0.977 23.412 hybrid contribution 1.074 -1.849 2.580 3.351 sum -22.308 -2.508 3.557 22.728 Atomic orbital electron populations 1.20344 0.84726 1.04588 1.03866 1.22372 0.98644 0.86871 0.99814 1.74994 0.95196 1.25903 1.17597 1.78261 1.15864 0.92417 1.15347 1.46165 1.09183 1.07157 1.48202 0.69634 1.21927 0.85222 0.96108 1.17775 1.16277 0.84783 0.81703 0.76911 1.90836 1.16101 1.81679 1.49824 1.48276 1.06054 1.07663 1.72961 1.22313 0.98543 0.77941 1.02358 1.23148 0.92782 0.99581 1.02320 1.21748 0.84765 0.91780 0.98045 0.86755 1.46021 1.05792 1.71778 1.15035 1.20487 0.83812 0.75517 0.88182 1.90729 1.85813 1.44647 1.17228 1.23547 0.98250 1.05518 1.03270 1.85415 0.93956 1.87863 1.15944 1.22841 0.93622 1.53461 0.98645 0.90868 1.24999 0.98023 0.94396 0.96118 1.70004 1.19500 1.42360 1.18307 0.86160 0.80373 0.78218 0.80713 1.20215 1.20685 1.19676 1.22859 0.80137 1.00923 1.02127 0.89891 0.88694 0.90081 0.89077 0.90172 0.89543 0.88179 0.76180 0.89045 0.88940 0.92072 0.90201 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 9.99 36.01 0.36 -0.28 16 2 C 0.06 0.71 7.29 -82.39 -0.60 0.11 16 3 N -0.27 -3.52 12.35 33.51 0.41 -3.10 16 4 N -0.04 -0.47 13.35 60.35 0.81 0.33 16 5 N -0.38 -3.87 6.60 33.31 0.22 -3.65 16 6 H 0.45 3.79 5.18 -190.33 -0.99 2.80 16 7 C -0.08 -0.81 6.97 -82.33 -0.57 -1.39 16 8 C 0.62 6.26 7.83 -12.61 -0.10 6.16 16 9 O -0.51 -6.09 15.19 5.27 0.08 -6.01 16 10 N -0.61 -4.89 3.33 -171.85 -0.57 -5.47 16 11 C 0.11 0.66 6.93 -2.53 -0.02 0.64 16 12 C -0.14 -0.68 6.71 -24.58 -0.17 -0.84 16 13 C 0.14 1.11 3.30 -66.09 -0.22 0.90 16 14 H 0.11 1.06 7.55 -51.93 -0.39 0.67 16 15 N -0.73 -6.86 5.12 -52.02 -0.27 -7.13 16 16 C 0.53 8.08 7.85 -10.98 -0.09 7.99 16 17 O -0.51 -9.75 15.51 5.55 0.09 -9.67 16 18 C -0.16 -2.73 6.16 36.01 0.22 -2.51 16 19 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 20 C -0.54 -14.58 9.50 30.94 0.29 -14.29 16 21 H 0.07 1.87 7.80 -52.48 -0.41 1.47 16 22 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 23 N -0.87 -25.30 13.22 55.49 0.73 -24.57 16 24 Si 0.92 20.70 29.55 -169.99 -5.02 15.67 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 28 C 0.06 0.49 4.90 -3.06 -0.02 0.48 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.81 6.51 -51.93 -0.34 0.47 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.54 7.99 -51.93 -0.41 0.12 16 33 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.09 0.35 8.01 -51.93 -0.42 -0.06 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.40 2.70 8.56 -40.82 -0.35 2.35 16 37 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 38 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.08 0.65 7.18 -51.93 -0.37 0.28 16 41 H 0.08 0.54 7.15 -51.93 -0.37 0.17 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -35.36 362.13 -6.99 -42.35 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.72 Total: 0.55 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.00 Total: -1.09 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 1.34 Total: -43.59 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.17 Total: -15.68 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.36 -6.99 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703893598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.498 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds