Wall clock time and date at job start Tue Mar 31 2020 22:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33320 * 126.81378 * 2 1 4 4 N 1.28509 * 109.43999 * 180.02562 * 3 2 1 5 5 N 1.28716 * 110.64193 * 359.97438 * 4 3 2 6 6 H 0.96997 * 126.03741 * 179.97438 * 5 4 3 7 7 C 1.37010 * 126.81275 * 179.68791 * 2 1 3 8 8 C 1.47230 * 127.18981 * 359.97438 * 7 2 1 9 9 O 1.21612 * 120.00287 * 354.63033 * 8 7 2 10 10 N 1.34778 * 119.99569 * 174.62861 * 8 7 2 11 11 C 1.47429 * 125.64336 * 185.07848 * 10 8 7 12 12 C 1.54912 * 104.83108 * 204.09127 * 11 10 8 13 13 C 1.55158 * 101.58223 * 322.99241 * 12 11 10 14 14 H 1.08996 * 110.72004 * 277.13930 * 13 12 11 15 15 N 1.46496 * 110.71904 * 154.03924 * 13 12 11 16 16 C 1.34775 * 119.99920 * 154.99779 * 15 13 12 17 17 O 1.21286 * 120.00000 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00111 * 180.02562 * 16 15 13 19 19 S 1.80996 * 109.47168 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00079 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99908 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00161 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00252 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99957 * 24 22 20 26 26 H 1.48502 * 109.46929 * 209.99848 * 24 22 20 27 27 H 1.48500 * 109.46926 * 329.99920 * 24 22 20 28 28 C 1.47015 * 125.65123 * 4.77297 * 10 8 7 29 29 H 1.08998 * 109.46990 * 90.02572 * 1 2 3 30 30 H 1.09004 * 109.46876 * 210.02619 * 1 2 3 31 31 H 1.08996 * 109.47192 * 330.02371 * 1 2 3 32 32 H 1.08998 * 110.37142 * 322.93522 * 11 10 8 33 33 H 1.09009 * 110.36397 * 85.25894 * 11 10 8 34 34 H 1.09000 * 111.00212 * 81.06958 * 12 11 10 35 35 H 1.09005 * 111.00026 * 204.91710 * 12 11 10 36 36 H 0.97001 * 120.00071 * 335.00709 * 15 13 12 37 37 H 1.08996 * 109.47199 * 300.00746 * 18 16 15 38 38 H 1.08998 * 109.46916 * 60.00508 * 18 16 15 39 39 H 0.96992 * 120.00015 * 180.02562 * 23 22 20 40 40 H 1.08996 * 109.88680 * 298.39273 * 28 10 8 41 41 H 1.09000 * 109.88552 * 59.56297 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6057 -0.6015 -0.0004 6 1 4.4213 -1.1265 -0.0010 7 6 2.3280 -1.0969 0.0060 8 6 1.9222 -2.5121 0.0142 9 8 0.7467 -2.8072 0.1149 10 7 2.8536 -3.4807 -0.0899 11 6 2.5819 -4.9255 -0.2009 12 6 3.8682 -5.6122 0.3222 13 6 4.9699 -4.6620 -0.2170 14 1 5.2093 -4.8981 -1.2538 15 7 6.1706 -4.7332 0.6194 16 6 7.3735 -4.4180 0.0997 17 8 7.4619 -4.0748 -1.0602 18 6 8.6087 -4.4918 0.9599 19 16 10.0542 -4.0114 -0.0176 20 6 11.3173 -4.1839 1.1988 21 1 11.0640 -4.5046 2.1985 22 6 12.6375 -3.9066 0.8725 23 7 12.9462 -3.5152 -0.3458 24 14 13.9765 -4.0888 2.1624 25 1 14.5172 -5.4713 2.1226 26 1 15.0684 -3.1220 1.8823 27 1 13.4083 -3.8179 3.5073 28 6 4.3084 -3.2711 -0.1178 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 1.7272 -5.1995 0.4176 33 1 2.4020 -5.1988 -1.2407 34 1 3.8786 -5.6441 1.4117 35 1 3.9753 -6.6126 -0.0975 36 1 6.0998 -5.0074 1.5471 37 1 8.5023 -3.8147 1.8075 38 1 8.7379 -5.5112 1.3234 39 1 13.8689 -3.3218 -0.5739 40 1 4.5794 -2.6671 -0.9837 41 1 4.6292 -2.7747 0.7981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703893598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:06 Heat of formation + Delta-G solvation = 5.632496 kcal Electronic energy + Delta-G solvation = -26315.969885 eV Core-core repulsion = 22358.516870 eV Total energy + Delta-G solvation = -3957.453015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.62337 -41.48584 -40.48074 -38.68266 -35.62872 -35.02299 -34.58115 -33.74318 -32.25609 -30.90636 -29.31283 -28.89490 -27.64942 -26.06020 -24.30329 -23.40670 -22.26755 -21.81777 -21.38824 -19.84900 -19.22076 -18.23273 -18.09294 -17.79708 -17.40478 -17.29343 -16.87684 -16.46542 -16.35019 -15.79682 -15.34939 -14.97919 -14.76448 -14.72100 -14.44787 -14.13586 -14.03957 -13.89759 -13.72799 -13.47718 -13.16432 -13.06041 -13.00162 -12.90532 -12.80657 -12.59488 -12.37147 -11.95991 -11.77099 -11.72467 -11.44156 -11.14442 -11.00458 -10.55745 -10.31804 -10.26570 -9.97121 -8.65435 -8.35198 -6.12109 -0.35926 1.01865 1.16361 1.27134 1.41839 1.44841 1.52332 1.54913 1.62419 1.76480 2.20726 2.27919 2.91112 2.99551 3.16594 3.25862 3.32954 3.46229 3.59442 3.81272 3.88563 3.94042 4.05821 4.17220 4.21838 4.32898 4.54032 4.54562 4.63193 4.72460 4.73935 4.78515 4.89800 4.99616 5.08640 5.24876 5.36289 5.41619 5.42392 5.97642 6.19599 6.43243 6.63399 7.03907 7.07162 7.18161 8.73604 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002331 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.419739 B =12006.869284 C =13180.858014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.054 3.946 3 N -0.292 5.292 4 N -0.062 5.062 5 N -0.363 5.363 6 H 0.458 0.542 7 C -0.076 4.076 8 C 0.618 3.382 9 O -0.529 6.529 10 N -0.607 5.607 11 C 0.106 3.894 12 C -0.122 4.122 13 C 0.141 3.859 14 H 0.101 0.899 15 N -0.702 5.702 16 C 0.539 3.461 17 O -0.556 6.556 18 C -0.133 4.133 19 S -0.150 6.150 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.258 1.258 28 C 0.063 3.937 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.421 0.579 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.270 0.730 40 H 0.073 0.927 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.852 -4.172 5.075 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 N -0.158 5.158 4 N -0.044 5.044 5 N -0.096 5.096 6 H 0.312 0.688 7 C -0.211 4.211 8 C 0.404 3.596 9 O -0.405 6.405 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.161 4.161 13 C 0.035 3.965 14 H 0.119 0.881 15 N -0.357 5.357 16 C 0.325 3.675 17 O -0.433 6.433 18 C -0.284 4.284 19 S 0.077 5.923 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.182 1.182 28 C -0.062 4.062 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.260 0.740 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.572 -2.305 3.103 24.874 hybrid contribution 1.293 -1.409 1.934 2.719 sum -23.279 -3.714 5.036 24.106 Atomic orbital electron populations 1.20420 0.82983 1.05083 1.04690 1.22869 0.99842 0.86589 0.99433 1.74959 0.95522 1.26916 1.18435 1.78213 1.16100 0.93380 1.16659 1.46148 1.09541 1.06652 1.47284 0.68836 1.22116 0.85096 0.96582 1.17268 1.16177 0.84776 0.81650 0.77018 1.90828 1.16802 1.81833 1.51032 1.48267 1.05771 1.08317 1.71764 1.22531 0.99345 0.76484 1.03177 1.23140 0.90184 0.99395 1.03343 1.21839 0.84506 0.92830 0.97329 0.88144 1.45655 1.04442 1.69620 1.15963 1.20053 0.84714 0.75555 0.87137 1.90728 1.86517 1.47118 1.18979 1.23394 0.95607 1.06786 1.02619 1.85565 0.98456 1.88798 1.19468 1.23201 0.94200 1.52854 0.99007 0.89853 1.26084 1.00805 0.93934 0.98309 1.70170 1.20007 1.43883 1.20679 0.85006 0.76879 0.78344 0.78099 1.19346 1.20586 1.18200 1.22841 0.80017 1.00912 1.02384 0.88830 0.88779 0.88912 0.88473 0.89424 0.87803 0.86312 0.74009 0.87057 0.86960 0.92066 0.90876 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 9.99 71.24 0.71 -0.45 16 2 C 0.05 1.17 7.29 42.04 0.31 1.48 16 3 N -0.29 -7.62 12.35 -47.88 -0.59 -8.21 16 4 N -0.06 -1.60 13.35 37.02 0.49 -1.10 16 5 N -0.36 -7.35 6.60 -48.52 -0.32 -7.67 16 6 H 0.46 7.44 5.18 -219.90 -1.14 6.30 16 7 C -0.08 -1.56 6.97 40.40 0.28 -1.28 16 8 C 0.62 11.64 7.83 86.61 0.68 12.32 16 9 O -0.53 -11.87 15.19 -4.07 -0.06 -11.93 16 10 N -0.61 -8.41 3.33 -815.86 -2.71 -11.12 16 11 C 0.11 0.95 6.93 86.86 0.60 1.55 16 12 C -0.12 -0.72 6.71 31.99 0.21 -0.50 16 13 C 0.14 1.84 3.30 46.19 0.15 1.99 16 14 H 0.10 1.71 7.55 -2.39 -0.02 1.69 16 15 N -0.70 -11.17 5.12 -436.89 -2.24 -13.40 16 16 C 0.54 15.57 7.85 87.66 0.69 16.26 16 17 O -0.56 -21.30 15.51 -3.05 -0.05 -21.35 16 18 C -0.13 -4.47 6.16 71.24 0.44 -4.03 16 19 S -0.15 -7.72 20.57 -56.49 -1.16 -8.88 16 20 C -0.54 -29.53 9.50 67.95 0.65 -28.89 16 21 H 0.08 4.17 7.80 -2.91 -0.02 4.14 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -54.36 13.22 21.65 0.29 -54.07 16 24 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 28 C 0.06 0.85 4.90 86.74 0.43 1.28 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.52 6.51 -2.38 -0.02 1.50 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.10 0.84 7.99 -2.39 -0.02 0.82 16 33 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.10 0.33 8.01 -2.39 -0.02 0.32 16 35 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.42 3.91 8.56 -92.71 -0.79 3.11 16 37 H 0.11 3.31 8.14 -2.40 -0.02 3.29 16 38 H 0.11 3.35 8.14 -2.40 -0.02 3.33 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.07 1.13 7.18 -2.39 -0.02 1.11 16 41 H 0.09 1.02 7.15 -2.39 -0.02 1.00 16 Total: -1.00 -79.45 362.13 0.46 -78.99 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -0.83 Total: 13.63 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.61 Total: 0.94 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -5.08 Total: -95.58 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.11 Total: -33.28 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.88 kcal Total: -79.45 0.46 -78.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703893598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.624 kcal (2) G-P(sol) polarization free energy of solvation -79.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds