Wall clock time and date at job start Tue Mar 31 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33323 * 126.81415 * 2 1 4 4 N 1.28509 * 109.43861 * 180.28030 * 3 2 1 5 5 N 1.28718 * 110.63764 * 359.72111 * 4 3 2 6 6 H 0.96998 * 126.03043 * 179.97438 * 5 4 3 7 7 C 1.37001 * 126.81390 * 179.81712 * 2 1 3 8 8 C 1.47231 * 127.18954 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00048 * 359.70914 * 8 7 2 10 10 N 1.34777 * 120.00145 * 179.71235 * 8 7 2 11 11 C 1.46505 * 120.00249 * 180.02562 * 10 8 7 12 12 H 1.09005 * 112.84404 * 336.19237 * 11 10 8 13 13 C 1.53781 * 113.61654 * 107.49897 * 11 10 8 14 14 C 1.53780 * 87.07979 * 139.98273 * 13 11 10 15 15 H 1.08998 * 113.69038 * 89.12344 * 14 13 11 16 16 N 1.46497 * 113.61210 * 220.01701 * 14 13 11 17 17 C 1.34773 * 120.00328 * 252.49469 * 16 14 13 18 18 O 1.21287 * 119.99548 * 0.02562 * 17 16 14 19 19 C 1.50695 * 120.00396 * 179.97438 * 17 16 14 20 20 S 1.81000 * 109.47338 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00265 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99604 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00161 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00140 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00142 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99698 * 25 23 21 27 27 H 1.48503 * 109.47261 * 299.99879 * 25 23 21 28 28 H 1.48500 * 109.47454 * 179.97438 * 25 23 21 29 29 C 1.53776 * 113.61376 * 204.99686 * 11 10 8 30 30 H 1.09001 * 109.46942 * 270.18192 * 1 2 3 31 31 H 1.09000 * 109.46781 * 30.18632 * 1 2 3 32 32 H 1.09001 * 109.46625 * 150.17746 * 1 2 3 33 33 H 0.96997 * 120.00311 * 359.97438 * 10 8 7 34 34 H 1.08993 * 113.61654 * 25.43319 * 13 11 10 35 35 H 1.08999 * 113.61147 * 254.52665 * 13 11 10 36 36 H 0.97008 * 119.99878 * 72.49959 * 16 14 13 37 37 H 1.09004 * 109.47077 * 60.00506 * 19 17 16 38 38 H 1.08997 * 109.47267 * 300.00260 * 19 17 16 39 39 H 0.97001 * 119.99591 * 359.97438 * 24 23 21 40 40 H 1.09006 * 113.61260 * 105.46711 * 29 11 10 41 41 H 1.09000 * 113.68919 * 334.57624 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0674 0.0000 4 7 3.5324 0.6836 -0.0059 5 7 3.6057 -0.6015 -0.0041 6 1 4.4213 -1.1265 -0.0080 7 6 2.3280 -1.0968 0.0035 8 6 1.9223 -2.5121 0.0085 9 8 0.7422 -2.8064 0.0153 10 7 2.8585 -3.4816 0.0057 11 6 2.4548 -4.8899 0.0102 12 1 1.4567 -5.0427 0.4208 13 6 2.6858 -5.6012 -1.3335 14 6 3.1498 -6.8201 -0.5188 15 1 2.3425 -7.5026 -0.2533 16 7 4.3077 -7.5063 -1.0974 17 6 4.1530 -8.7072 -1.6892 18 8 3.0550 -9.2196 -1.7433 19 6 5.3439 -9.4128 -2.2849 20 16 4.8160 -10.9901 -2.9986 21 6 6.3603 -11.5842 -3.6041 22 1 7.2552 -10.9940 -3.4722 23 6 6.4267 -12.8101 -4.2515 24 7 5.3358 -13.5288 -4.4136 25 14 8.0641 -13.4403 -4.8928 26 1 9.0179 -13.5790 -3.7631 27 1 8.6094 -12.4802 -5.8859 28 1 7.8669 -14.7628 -5.5388 29 6 3.5155 -5.8329 0.6021 30 1 -0.3633 0.0033 1.0277 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3632 -0.8916 -0.5111 33 1 3.7997 -3.2469 0.0000 34 1 3.4756 -5.1519 -1.9354 35 1 1.7699 -5.7764 -1.8979 36 1 5.1858 -7.0963 -1.0544 37 1 6.0843 -9.5965 -1.5062 38 1 5.7831 -8.7898 -3.0640 39 1 4.4857 -13.2017 -4.0803 40 1 3.2695 -6.1950 1.6003 41 1 4.5328 -5.4479 0.5302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703927830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:09 Heat of formation + Delta-G solvation = 33.581606 kcal Electronic energy + Delta-G solvation = -25270.195105 eV Core-core repulsion = 21313.954054 eV Total energy + Delta-G solvation = -3956.241050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.96291 -40.80971 -39.56962 -38.16787 -35.09865 -34.21407 -33.19030 -32.58554 -32.51219 -29.42373 -28.44366 -26.24549 -25.53915 -24.89994 -24.13434 -22.52735 -21.38149 -20.65993 -20.58541 -19.43751 -18.37916 -17.42666 -17.10684 -17.07598 -16.69658 -15.90911 -15.45131 -15.37952 -14.93519 -14.87596 -14.30916 -14.16995 -13.87755 -13.55386 -13.42357 -13.21776 -13.15687 -13.03870 -12.47127 -12.43465 -12.24123 -12.11021 -11.76391 -11.70602 -11.62093 -11.33714 -11.14342 -10.96506 -10.67788 -10.21735 -9.95835 -9.70620 -9.65875 -9.58694 -9.11392 -9.04461 -8.29108 -6.73755 -6.67461 -4.06171 0.26009 1.69254 1.79344 2.25079 2.42055 2.83214 2.84905 3.30578 3.33547 3.47765 3.54284 3.65756 3.85053 3.98915 4.06765 4.19869 4.24685 4.43079 4.45078 4.45432 4.91024 5.09970 5.12369 5.15455 5.17150 5.19515 5.22782 5.33900 5.38483 5.41336 5.61333 5.63092 5.67378 5.79184 5.89265 5.91992 5.97361 6.41446 6.64107 7.35006 7.47104 7.67691 7.85502 8.38116 8.44545 9.21362 10.76353 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.001640 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.456329 B =17070.663541 C =17595.952421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 N -0.268 5.268 4 N -0.040 5.040 5 N -0.376 5.376 6 H 0.450 0.550 7 C -0.077 4.077 8 C 0.598 3.402 9 O -0.505 6.505 10 N -0.713 5.713 11 C 0.126 3.874 12 H 0.127 0.873 13 C -0.165 4.165 14 C 0.131 3.869 15 H 0.122 0.878 16 N -0.726 5.726 17 C 0.532 3.468 18 O -0.514 6.514 19 C -0.132 4.132 20 S -0.115 6.115 21 C -0.609 4.609 22 H 0.066 0.934 23 C 0.036 3.964 24 N -0.882 5.882 25 Si 1.084 2.916 26 H -0.285 1.285 27 H -0.285 1.285 28 H -0.277 1.277 29 C -0.153 4.153 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.396 0.604 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.399 0.601 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.278 0.722 40 H 0.087 0.913 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 26.466 12.216 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 N -0.135 5.135 4 N -0.022 5.022 5 N -0.103 5.103 6 H 0.297 0.703 7 C -0.210 4.210 8 C 0.382 3.618 9 O -0.378 6.378 10 N -0.364 5.364 11 C 0.021 3.979 12 H 0.145 0.855 13 C -0.205 4.205 14 C 0.025 3.975 15 H 0.139 0.861 16 N -0.380 5.380 17 C 0.318 3.682 18 O -0.388 6.388 19 C -0.283 4.283 20 S 0.111 5.889 21 C -0.757 4.757 22 H 0.084 0.916 23 C -0.175 4.175 24 N -0.516 5.516 25 Si 0.910 3.090 26 H -0.211 1.211 27 H -0.211 1.211 28 H -0.202 1.202 29 C -0.192 4.192 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.233 0.767 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.936 25.453 11.338 28.141 hybrid contribution 1.949 1.022 0.844 2.357 sum -1.987 26.475 12.182 29.210 Atomic orbital electron populations 1.20367 0.84588 1.04696 1.04014 1.22415 0.98781 0.86868 0.99345 1.75002 0.95121 1.25921 1.17476 1.78232 1.16101 0.92114 1.15763 1.45470 1.08732 1.07083 1.49009 0.70313 1.22073 0.85087 0.96462 1.17383 1.16730 0.86113 0.82145 0.76810 1.90871 1.16376 1.81770 1.48777 1.45831 1.08851 1.06437 1.75260 1.22463 1.00303 0.77326 0.97775 0.85540 1.24015 1.03078 0.96276 0.97159 1.22133 0.90499 0.92057 0.92855 0.86055 1.45891 1.10733 1.20850 1.60477 1.20348 0.90527 0.80225 0.77079 1.90713 1.26775 1.65115 1.56206 1.23325 0.98822 1.02856 1.03331 1.84849 1.16017 1.14640 1.73354 1.23694 0.93712 1.10738 1.47570 0.91620 1.26061 1.04908 0.92428 0.94110 1.70808 1.00103 1.38908 1.41826 0.83330 0.72810 0.76509 0.76366 1.21133 1.21141 1.20228 1.23779 0.99381 0.96018 1.00040 0.89721 0.90047 0.88618 0.77059 0.89287 0.89895 0.76698 0.88918 0.88961 0.90983 0.89473 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 9.93 36.01 0.36 -0.17 16 2 C 0.07 0.56 7.30 -82.39 -0.60 -0.04 16 3 N -0.27 -2.65 12.35 33.52 0.41 -2.23 16 4 N -0.04 -0.34 13.35 60.35 0.81 0.47 16 5 N -0.38 -1.88 6.97 33.31 0.23 -1.65 16 6 H 0.45 0.31 8.32 -190.33 -1.58 -1.27 16 7 C -0.08 -0.53 7.17 -82.34 -0.59 -1.12 16 8 C 0.60 4.37 7.81 -12.61 -0.10 4.27 16 9 O -0.51 -5.27 14.59 5.26 0.08 -5.19 16 10 N -0.71 -3.29 5.35 -54.15 -0.29 -3.57 16 11 C 0.13 0.75 4.24 -67.12 -0.28 0.47 16 12 H 0.13 0.91 7.46 -51.93 -0.39 0.52 16 13 C -0.17 -1.29 7.68 -25.92 -0.20 -1.48 16 14 C 0.13 1.18 4.24 -67.12 -0.28 0.89 16 15 H 0.12 1.35 7.46 -51.93 -0.39 0.96 16 16 N -0.73 -7.91 5.35 -53.02 -0.28 -8.19 16 17 C 0.53 9.00 7.85 -10.99 -0.09 8.92 16 18 O -0.51 -10.88 15.46 5.55 0.09 -10.79 16 19 C -0.13 -2.50 6.16 36.00 0.22 -2.28 16 20 S -0.11 -3.01 19.60 -107.50 -2.11 -5.11 16 21 C -0.61 -17.17 9.50 30.94 0.29 -16.88 16 22 H 0.07 1.76 7.80 -52.48 -0.41 1.35 16 23 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 24 N -0.88 -27.08 13.67 55.49 0.76 -26.32 16 25 Si 1.08 24.43 29.92 -169.99 -5.09 19.34 16 26 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 C -0.15 -0.78 7.58 -25.92 -0.20 -0.98 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.70 6.62 -51.93 -0.34 0.36 16 33 H 0.40 0.57 7.99 -40.82 -0.33 0.25 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 3.07 8.73 -40.82 -0.36 2.72 16 37 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.28 8.70 7.12 -40.82 -0.29 8.41 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.29 8.10 -51.93 -0.42 -0.13 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -38.48 369.47 -7.65 -46.13 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.26 Total: -0.95 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.56 Total: -7.49 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 1.64 Total: -41.50 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.16 Total: -15.99 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.09 Total: 19.34 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.11 Total: -5.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.48 -7.65 -46.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703927830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.714 kcal (2) G-P(sol) polarization free energy of solvation -38.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds