Wall clock time and date at job start Tue Mar 31 2020 22:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33323 * 126.81415 * 2 1 4 4 N 1.28509 * 109.43861 * 180.28030 * 3 2 1 5 5 N 1.28718 * 110.63764 * 359.72111 * 4 3 2 6 6 H 0.96998 * 126.03043 * 179.97438 * 5 4 3 7 7 C 1.37001 * 126.81390 * 179.81712 * 2 1 3 8 8 C 1.47231 * 127.18954 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00048 * 359.70914 * 8 7 2 10 10 N 1.34777 * 120.00145 * 179.71235 * 8 7 2 11 11 C 1.46505 * 120.00249 * 180.02562 * 10 8 7 12 12 H 1.09005 * 112.84404 * 336.19237 * 11 10 8 13 13 C 1.53781 * 113.61654 * 107.49897 * 11 10 8 14 14 C 1.53780 * 87.07979 * 139.98273 * 13 11 10 15 15 H 1.08998 * 113.69038 * 89.12344 * 14 13 11 16 16 N 1.46497 * 113.61210 * 220.01701 * 14 13 11 17 17 C 1.34773 * 120.00328 * 252.49469 * 16 14 13 18 18 O 1.21287 * 119.99548 * 0.02562 * 17 16 14 19 19 C 1.50695 * 120.00396 * 179.97438 * 17 16 14 20 20 S 1.81000 * 109.47338 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00265 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99604 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00161 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00140 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00142 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99698 * 25 23 21 27 27 H 1.48503 * 109.47261 * 299.99879 * 25 23 21 28 28 H 1.48500 * 109.47454 * 179.97438 * 25 23 21 29 29 C 1.53776 * 113.61376 * 204.99686 * 11 10 8 30 30 H 1.09001 * 109.46942 * 270.18192 * 1 2 3 31 31 H 1.09000 * 109.46781 * 30.18632 * 1 2 3 32 32 H 1.09001 * 109.46625 * 150.17746 * 1 2 3 33 33 H 0.96997 * 120.00311 * 359.97438 * 10 8 7 34 34 H 1.08993 * 113.61654 * 25.43319 * 13 11 10 35 35 H 1.08999 * 113.61147 * 254.52665 * 13 11 10 36 36 H 0.97008 * 119.99878 * 72.49959 * 16 14 13 37 37 H 1.09004 * 109.47077 * 60.00506 * 19 17 16 38 38 H 1.08997 * 109.47267 * 300.00260 * 19 17 16 39 39 H 0.97001 * 119.99591 * 359.97438 * 24 23 21 40 40 H 1.09006 * 113.61260 * 105.46711 * 29 11 10 41 41 H 1.09000 * 113.68919 * 334.57624 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0674 0.0000 4 7 3.5324 0.6836 -0.0059 5 7 3.6057 -0.6015 -0.0041 6 1 4.4213 -1.1265 -0.0080 7 6 2.3280 -1.0968 0.0035 8 6 1.9223 -2.5121 0.0085 9 8 0.7422 -2.8064 0.0153 10 7 2.8585 -3.4816 0.0057 11 6 2.4548 -4.8899 0.0102 12 1 1.4567 -5.0427 0.4208 13 6 2.6858 -5.6012 -1.3335 14 6 3.1498 -6.8201 -0.5188 15 1 2.3425 -7.5026 -0.2533 16 7 4.3077 -7.5063 -1.0974 17 6 4.1530 -8.7072 -1.6892 18 8 3.0550 -9.2196 -1.7433 19 6 5.3439 -9.4128 -2.2849 20 16 4.8160 -10.9901 -2.9986 21 6 6.3603 -11.5842 -3.6041 22 1 7.2552 -10.9940 -3.4722 23 6 6.4267 -12.8101 -4.2515 24 7 5.3358 -13.5288 -4.4136 25 14 8.0641 -13.4403 -4.8928 26 1 9.0179 -13.5790 -3.7631 27 1 8.6094 -12.4802 -5.8859 28 1 7.8669 -14.7628 -5.5388 29 6 3.5155 -5.8329 0.6021 30 1 -0.3633 0.0033 1.0277 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3632 -0.8916 -0.5111 33 1 3.7997 -3.2469 0.0000 34 1 3.4756 -5.1519 -1.9354 35 1 1.7699 -5.7764 -1.8979 36 1 5.1858 -7.0963 -1.0544 37 1 6.0843 -9.5965 -1.5062 38 1 5.7831 -8.7898 -3.0640 39 1 4.4857 -13.2017 -4.0803 40 1 3.2695 -6.1950 1.6003 41 1 4.5328 -5.4479 0.5302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703927830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:08 Heat of formation + Delta-G solvation = 1.637274 kcal Electronic energy + Delta-G solvation = -25271.580315 eV Core-core repulsion = 21313.954054 eV Total energy + Delta-G solvation = -3957.626261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.52850 -41.52519 -40.54072 -39.09716 -35.76531 -34.96000 -34.74314 -33.98348 -33.21436 -30.80473 -29.01799 -27.11756 -26.80002 -26.13410 -24.81842 -23.19250 -22.02428 -21.71893 -21.29722 -20.42296 -19.94252 -18.21373 -17.92924 -17.68742 -17.64180 -17.00192 -16.54976 -16.25159 -16.11301 -15.76795 -15.71618 -15.22292 -14.85911 -14.74284 -14.47689 -14.13999 -14.02959 -13.87347 -13.72752 -13.53494 -13.47064 -13.02621 -12.73314 -12.46262 -12.41989 -12.30174 -12.04447 -11.95619 -11.70742 -11.54382 -11.31105 -11.09363 -11.01771 -10.54904 -10.31845 -10.25719 -10.05018 -8.91986 -8.86634 -6.27388 -0.29465 1.07397 1.20498 1.34765 1.50574 1.52592 1.60793 1.76357 1.81011 1.84675 2.26095 2.36311 3.02703 3.13677 3.15145 3.30355 3.44039 3.48687 3.72645 3.79851 3.87077 3.89487 3.90166 4.19160 4.38776 4.54030 4.56593 4.61148 4.64556 4.73688 4.85368 4.87945 4.93036 5.00502 5.23689 5.30271 5.51586 5.62415 5.64309 6.15030 6.21214 6.45925 6.85749 7.06597 7.09400 7.18708 8.51397 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.001640 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.456329 B =17070.663541 C =17595.952421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.298 5.298 4 N -0.054 5.054 5 N -0.347 5.347 6 H 0.470 0.530 7 C -0.071 4.071 8 C 0.602 3.398 9 O -0.540 6.540 10 N -0.693 5.693 11 C 0.134 3.866 12 H 0.113 0.887 13 C -0.163 4.163 14 C 0.114 3.886 15 H 0.095 0.905 16 N -0.696 5.696 17 C 0.533 3.467 18 O -0.567 6.567 19 C -0.110 4.110 20 S -0.200 6.200 21 C -0.613 4.613 22 H 0.077 0.923 23 C -0.020 4.020 24 N -0.914 5.914 25 Si 1.136 2.864 26 H -0.262 1.262 27 H -0.263 1.263 28 H -0.282 1.282 29 C -0.126 4.126 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.415 0.585 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.420 0.580 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.260 0.740 40 H 0.096 0.904 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 28.315 13.186 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 N -0.164 5.164 4 N -0.036 5.036 5 N -0.078 5.078 6 H 0.321 0.679 7 C -0.206 4.206 8 C 0.386 3.614 9 O -0.415 6.415 10 N -0.345 5.345 11 C 0.028 3.972 12 H 0.131 0.869 13 C -0.203 4.203 14 C 0.008 3.992 15 H 0.113 0.887 16 N -0.349 5.349 17 C 0.319 3.681 18 O -0.445 6.445 19 C -0.262 4.262 20 S 0.027 5.973 21 C -0.761 4.761 22 H 0.095 0.905 23 C -0.223 4.223 24 N -0.549 5.549 25 Si 0.954 3.046 26 H -0.187 1.187 27 H -0.188 1.188 28 H -0.207 1.207 29 C -0.165 4.165 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.253 0.747 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.258 0.742 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.858 27.382 12.346 30.049 hybrid contribution 1.001 0.560 0.600 1.295 sum 0.144 27.942 12.946 30.796 Atomic orbital electron populations 1.20371 0.83977 1.04622 1.04469 1.22738 0.99579 0.87175 0.99690 1.74982 0.95724 1.26908 1.18811 1.78156 1.15738 0.93283 1.16385 1.45415 1.09045 1.06347 1.46988 0.67925 1.21939 0.85516 0.95999 1.17139 1.16732 0.85880 0.82423 0.76389 1.90870 1.17965 1.82182 1.50449 1.45599 1.09578 1.05345 1.73978 1.22228 1.00388 0.77959 0.96579 0.86861 1.24009 1.02501 0.95915 0.97860 1.22307 0.89434 0.92145 0.95276 0.88733 1.45596 1.12536 1.18587 1.58168 1.20052 0.88957 0.81680 0.77403 1.90707 1.28293 1.66867 1.58610 1.23241 1.00054 0.98764 1.04111 1.85117 1.17294 1.20337 1.74590 1.24035 0.94267 1.10928 1.46846 0.90528 1.27824 1.07582 0.92990 0.93913 1.70925 1.00288 1.39879 1.43812 0.82722 0.68862 0.76099 0.76950 1.18707 1.18784 1.20723 1.23689 1.00736 0.93316 0.98742 0.89020 0.89327 0.89395 0.74723 0.87703 0.92249 0.74207 0.86803 0.86951 0.92882 0.88507 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.93 71.24 0.71 -0.29 16 2 C 0.05 0.79 7.30 42.04 0.31 1.10 16 3 N -0.30 -5.64 12.35 -47.88 -0.59 -6.23 16 4 N -0.05 -0.82 13.35 37.02 0.49 -0.32 16 5 N -0.35 -2.60 6.97 -48.53 -0.34 -2.94 16 6 H 0.47 -1.04 8.32 -219.90 -1.83 -2.87 16 7 C -0.07 -0.86 7.17 40.40 0.29 -0.57 16 8 C 0.60 7.61 7.81 86.61 0.68 8.29 16 9 O -0.54 -10.85 14.59 -4.11 -0.06 -10.91 16 10 N -0.69 -4.12 5.35 -443.48 -2.37 -6.49 16 11 C 0.13 1.26 4.24 45.52 0.19 1.45 16 12 H 0.11 1.49 7.46 -2.38 -0.02 1.47 16 13 C -0.16 -2.22 7.68 31.12 0.24 -1.98 16 14 C 0.11 1.83 4.24 45.52 0.19 2.02 16 15 H 0.09 2.11 7.46 -2.39 -0.02 2.09 16 16 N -0.70 -13.25 5.35 -440.05 -2.36 -15.60 16 17 C 0.53 17.50 7.85 87.66 0.69 18.19 16 18 O -0.57 -24.52 15.46 -3.05 -0.05 -24.56 16 19 C -0.11 -4.01 6.16 71.23 0.44 -3.57 16 20 S -0.20 -10.68 19.60 -56.49 -1.11 -11.79 16 21 C -0.61 -34.43 9.50 67.95 0.65 -33.79 16 22 H 0.08 3.99 7.80 -2.91 -0.02 3.97 16 23 C -0.02 -1.14 5.49 84.86 0.47 -0.67 16 24 N -0.91 -57.42 13.67 21.65 0.30 -57.13 16 25 Si 1.14 48.10 29.92 68.60 2.05 50.16 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 29 C -0.13 -0.79 7.58 31.12 0.24 -0.55 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.30 6.62 -2.39 -0.02 1.28 16 33 H 0.42 -0.76 7.99 -92.71 -0.74 -1.50 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.42 4.55 8.73 -92.70 -0.81 3.74 16 37 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 39 H 0.26 17.02 7.12 -92.71 -0.66 16.36 16 40 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.13 0.00 8.10 -2.39 -0.02 -0.02 16 Total: -1.00 -88.73 369.47 -1.10 -89.83 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -2.15 Total: 6.39 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.08 Total: -10.38 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -4.87 Total: -88.72 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.11 Total: -35.48 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.05 Total: 50.16 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.11 Total: -11.79 kcal Total: -88.73 -1.10 -89.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703927830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.464 kcal (2) G-P(sol) polarization free energy of solvation -88.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds