Wall clock time and date at job start Tue Mar 31 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48501 * 109.46653 * 269.99745 * 3 2 1 5 5 H 1.48499 * 109.46840 * 29.99743 * 3 2 1 6 6 H 1.48502 * 109.47265 * 150.00218 * 3 2 1 7 7 C 1.38800 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99642 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00036 * 179.97438 * 9 7 2 11 11 C 1.50691 * 109.47125 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99966 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99985 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.52235 * 34.91917 * 14 13 11 16 16 C 1.53039 * 109.49459 * 154.99602 * 14 13 11 17 17 C 1.53046 * 109.53615 * 181.31685 * 16 14 13 18 18 C 1.53198 * 109.30966 * 298.63703 * 17 16 14 19 19 N 1.46929 * 108.77350 * 54.63735 * 18 17 16 20 20 C 1.34778 * 120.62989 * 126.36938 * 19 18 17 21 21 O 1.21551 * 120.00086 * 187.14670 * 20 19 18 22 22 C 1.47874 * 119.99805 * 7.14838 * 20 19 18 23 23 N 1.34551 * 126.04582 * 187.65912 * 22 20 19 24 24 C 1.30865 * 107.27070 * 179.97438 * 23 22 20 25 25 N 1.34583 * 107.62441 * 359.97438 * 24 23 22 26 26 H 0.97004 * 125.74696 * 180.02562 * 25 24 23 27 27 N 1.28849 * 108.50219 * 359.75433 * 25 24 23 28 28 C 1.46917 * 118.73858 * 306.63617 * 19 18 17 29 29 H 0.96998 * 120.00157 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47286 * 60.00009 * 10 9 7 31 31 H 1.08998 * 109.47027 * 300.00080 * 10 9 7 32 32 H 0.96995 * 120.00139 * 359.97438 * 13 11 10 33 33 H 1.09003 * 109.45827 * 61.30441 * 16 14 13 34 34 H 1.08993 * 109.46148 * 301.33593 * 16 14 13 35 35 H 1.08995 * 109.49856 * 178.68571 * 17 16 14 36 36 H 1.08995 * 109.49923 * 58.58487 * 17 16 14 37 37 H 1.08997 * 109.58851 * 294.84364 * 18 17 16 38 38 H 1.09003 * 109.70049 * 174.49035 * 18 17 16 39 39 H 1.07998 * 126.19037 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.58668 * 173.14839 * 28 19 18 41 41 H 1.09005 * 109.58781 * 293.57438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5480 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0013 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0049 13 7 2.8442 -6.3431 0.0035 14 6 2.3304 -7.7151 0.0045 15 1 1.4136 -7.7612 -0.5833 16 6 3.3755 -8.6523 -0.6050 17 6 2.8269 -10.0808 -0.6344 18 6 2.5396 -10.5427 0.7977 19 7 1.6481 -9.5670 1.4395 20 6 0.4948 -9.9639 2.0130 21 8 -0.2952 -9.1370 2.4250 22 6 0.1906 -11.4053 2.1412 23 7 -0.9747 -11.9347 2.5562 24 6 -0.8416 -13.2363 2.5289 25 7 0.4035 -13.5097 2.0973 26 1 0.7802 -14.3956 1.9782 27 7 1.0088 -12.3966 1.8634 28 6 2.0348 -8.1496 1.4389 29 1 -0.4850 0.8400 -0.0004 30 1 3.1252 -3.7310 0.8908 31 1 3.1237 -3.7318 -0.8892 32 1 3.8009 -6.1836 0.0023 33 1 4.2835 -8.6245 -0.0025 34 1 3.6039 -8.3301 -1.6208 35 1 3.5624 -10.7437 -1.0899 36 1 1.9054 -10.1046 -1.2160 37 1 3.4739 -10.6063 1.3555 38 1 2.0581 -11.5205 0.7788 39 1 -1.5947 -13.9602 2.8031 40 1 1.2193 -7.5482 1.8406 41 1 2.9271 -8.0140 2.0501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704500134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:28 Heat of formation + Delta-G solvation = 34.017290 kcal Electronic energy + Delta-G solvation = -26354.374086 eV Core-core repulsion = 22398.151928 eV Total energy + Delta-G solvation = -3956.222158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.94771 -40.41118 -39.07261 -37.41624 -34.62671 -33.85389 -32.64006 -32.38237 -32.02204 -30.50905 -28.35054 -26.46422 -25.44444 -24.12461 -23.60207 -23.02019 -21.20517 -20.30183 -19.94400 -18.76399 -17.81681 -17.62937 -16.86987 -16.36610 -16.23992 -15.92591 -15.31017 -15.22101 -14.76752 -14.71296 -14.57692 -14.18093 -13.94628 -13.62568 -13.34346 -13.13103 -13.01145 -12.70676 -12.41707 -12.12168 -11.62899 -11.35876 -11.28638 -11.12941 -11.02816 -10.98178 -10.82724 -10.70985 -10.61648 -10.37011 -10.10914 -9.77177 -9.38240 -9.21675 -9.02243 -8.65599 -8.17554 -6.44707 -6.16928 -3.87299 0.89582 1.74607 2.06865 2.48716 3.07324 3.08590 3.14558 3.25559 3.31165 3.35391 3.68808 3.76541 4.01903 4.24476 4.31751 4.52459 4.60299 4.66458 4.86281 5.07419 5.17478 5.17993 5.22493 5.25332 5.42211 5.50502 5.57337 5.65841 5.69801 5.75651 5.84202 5.92583 5.98331 6.06888 6.14664 6.18032 6.34915 6.66569 7.03913 7.50847 7.63718 7.72645 7.93647 8.39546 8.65273 9.28027 10.90443 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025755 B = 0.002118 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.912501 B =13213.815940 C =14036.034374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.509 6.509 13 N -0.733 5.733 14 C 0.135 3.865 15 H 0.093 0.907 16 C -0.128 4.128 17 C -0.130 4.130 18 C 0.084 3.916 19 N -0.595 5.595 20 C 0.608 3.392 21 O -0.495 6.495 22 C 0.164 3.836 23 N -0.460 5.460 24 C 0.201 3.799 25 N -0.404 5.404 26 H 0.451 0.549 27 N -0.279 5.279 28 C 0.103 3.897 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.232 0.768 40 H 0.105 0.895 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -32.991 1.523 34.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.316 3.684 12 O -0.382 6.382 13 N -0.388 5.388 14 C 0.029 3.971 15 H 0.111 0.889 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.039 4.039 19 N -0.330 5.330 20 C 0.391 3.609 21 O -0.365 6.365 22 C -0.116 4.116 23 N -0.184 5.184 24 C -0.097 4.097 25 N -0.126 5.126 26 H 0.297 0.703 27 N -0.120 5.120 28 C -0.020 4.020 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.248 0.752 40 H 0.123 0.877 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.797 -32.270 1.671 33.021 hybrid contribution 2.612 0.427 -0.045 2.647 sum 9.409 -31.843 1.626 33.244 Atomic orbital electron populations 1.70023 1.05936 1.27426 1.46826 1.25000 0.95027 0.99022 0.94608 0.86169 0.79399 0.81629 0.78291 1.20314 1.20771 1.19717 1.22867 0.94890 0.91704 1.58915 0.90945 1.85475 1.04794 0.96252 1.96698 1.23526 1.06604 0.95291 1.04917 1.20391 0.86632 0.86314 0.75031 1.90748 1.15253 1.85417 1.46732 1.45983 1.09951 1.04767 1.78113 1.21054 0.98614 0.81487 0.95972 0.88925 1.21833 0.98196 0.94592 1.01971 1.21886 1.02024 0.96181 0.96803 1.22495 0.94811 0.94006 0.92587 1.47713 1.20519 1.08604 1.56136 1.16424 0.81576 0.83810 0.79135 1.90912 1.46274 1.51643 1.47649 1.23896 0.88550 0.95139 1.04058 1.71362 1.22952 1.05514 1.18555 1.26790 0.88897 0.94415 0.99625 1.45317 1.11667 1.08951 1.46659 0.70266 1.74131 1.24304 0.92431 1.21134 1.22049 1.02312 0.80138 0.97542 0.92193 0.89170 0.89223 0.76668 0.91043 0.90635 0.90043 0.91205 0.91142 0.85999 0.75227 0.87717 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.49 9.50 30.94 0.29 -15.19 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.53 10.06 7.81 -10.99 -0.09 9.98 16 12 O -0.51 -12.01 15.53 5.55 0.09 -11.92 16 13 N -0.73 -9.72 5.08 -53.90 -0.27 -9.99 16 14 C 0.14 1.66 2.59 -68.03 -0.18 1.48 16 15 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 16 C -0.13 -1.02 5.36 -26.69 -0.14 -1.16 16 17 C -0.13 -0.92 6.08 -26.60 -0.16 -1.08 16 18 C 0.08 0.68 6.10 -3.71 -0.02 0.65 16 19 N -0.59 -7.13 2.98 -174.13 -0.52 -7.65 16 20 C 0.61 9.03 7.69 -12.32 -0.09 8.94 16 21 O -0.50 -9.65 16.52 5.32 0.09 -9.56 16 22 C 0.16 1.97 7.66 -156.36 -1.20 0.78 16 23 N -0.46 -5.32 11.41 -12.37 -0.14 -5.46 16 24 C 0.20 1.04 13.14 -90.49 -1.19 -0.14 16 25 N -0.40 -1.58 6.93 29.56 0.20 -1.37 16 26 H 0.45 -0.38 8.96 -190.21 -1.71 -2.08 16 27 N -0.28 -2.22 8.77 32.07 0.28 -1.94 16 28 C 0.10 1.34 5.99 -3.94 -0.02 1.32 16 29 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 32 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.12 0.94 4.18 -71.86 -0.30 0.64 16 39 H 0.23 -0.03 8.06 -52.49 -0.42 -0.45 16 40 H 0.10 1.81 7.00 -51.93 -0.36 1.45 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -42.07 361.09 -10.47 -52.54 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.46 Total: -1.73 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.68 Total: 4.68 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.29 Total: -52.33 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.17 Total: -21.48 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -42.07 -10.47 -52.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704500134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.561 kcal (2) G-P(sol) polarization free energy of solvation -42.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds