Wall clock time and date at job start Tue Mar 31 2020 22:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48501 * 109.46653 * 269.99745 * 3 2 1 5 5 H 1.48499 * 109.46840 * 29.99743 * 3 2 1 6 6 H 1.48502 * 109.47265 * 150.00218 * 3 2 1 7 7 C 1.38800 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99642 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00036 * 179.97438 * 9 7 2 11 11 C 1.50691 * 109.47125 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99966 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99985 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.52235 * 34.91917 * 14 13 11 16 16 C 1.53039 * 109.49459 * 154.99602 * 14 13 11 17 17 C 1.53046 * 109.53615 * 181.31685 * 16 14 13 18 18 C 1.53198 * 109.30966 * 298.63703 * 17 16 14 19 19 N 1.46929 * 108.77350 * 54.63735 * 18 17 16 20 20 C 1.34778 * 120.62989 * 126.36938 * 19 18 17 21 21 O 1.21551 * 120.00086 * 187.14670 * 20 19 18 22 22 C 1.47874 * 119.99805 * 7.14838 * 20 19 18 23 23 N 1.34551 * 126.04582 * 187.65912 * 22 20 19 24 24 C 1.30865 * 107.27070 * 179.97438 * 23 22 20 25 25 N 1.34583 * 107.62441 * 359.97438 * 24 23 22 26 26 H 0.97004 * 125.74696 * 180.02562 * 25 24 23 27 27 N 1.28849 * 108.50219 * 359.75433 * 25 24 23 28 28 C 1.46917 * 118.73858 * 306.63617 * 19 18 17 29 29 H 0.96998 * 120.00157 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47286 * 60.00009 * 10 9 7 31 31 H 1.08998 * 109.47027 * 300.00080 * 10 9 7 32 32 H 0.96995 * 120.00139 * 359.97438 * 13 11 10 33 33 H 1.09003 * 109.45827 * 61.30441 * 16 14 13 34 34 H 1.08993 * 109.46148 * 301.33593 * 16 14 13 35 35 H 1.08995 * 109.49856 * 178.68571 * 17 16 14 36 36 H 1.08995 * 109.49923 * 58.58487 * 17 16 14 37 37 H 1.08997 * 109.58851 * 294.84364 * 18 17 16 38 38 H 1.09003 * 109.70049 * 174.49035 * 18 17 16 39 39 H 1.07998 * 126.19037 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.58668 * 173.14839 * 28 19 18 41 41 H 1.09005 * 109.58781 * 293.57438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5480 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0013 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0049 13 7 2.8442 -6.3431 0.0035 14 6 2.3304 -7.7151 0.0045 15 1 1.4136 -7.7612 -0.5833 16 6 3.3755 -8.6523 -0.6050 17 6 2.8269 -10.0808 -0.6344 18 6 2.5396 -10.5427 0.7977 19 7 1.6481 -9.5670 1.4395 20 6 0.4948 -9.9639 2.0130 21 8 -0.2952 -9.1370 2.4250 22 6 0.1906 -11.4053 2.1412 23 7 -0.9747 -11.9347 2.5562 24 6 -0.8416 -13.2363 2.5289 25 7 0.4035 -13.5097 2.0973 26 1 0.7802 -14.3956 1.9782 27 7 1.0088 -12.3966 1.8634 28 6 2.0348 -8.1496 1.4389 29 1 -0.4850 0.8400 -0.0004 30 1 3.1252 -3.7310 0.8908 31 1 3.1237 -3.7318 -0.8892 32 1 3.8009 -6.1836 0.0023 33 1 4.2835 -8.6245 -0.0025 34 1 3.6039 -8.3301 -1.6208 35 1 3.5624 -10.7437 -1.0899 36 1 1.9054 -10.1046 -1.2160 37 1 3.4739 -10.6063 1.3555 38 1 2.0581 -11.5205 0.7788 39 1 -1.5947 -13.9602 2.8031 40 1 1.2193 -7.5482 1.8406 41 1 2.9271 -8.0140 2.0501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704500134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:27 Heat of formation + Delta-G solvation = 0.274624 kcal Electronic energy + Delta-G solvation = -26355.837278 eV Core-core repulsion = 22398.151928 eV Total energy + Delta-G solvation = -3957.685349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.54723 -41.48222 -40.45572 -38.53702 -35.84690 -34.58304 -34.49868 -33.58618 -32.74005 -31.72046 -29.70428 -27.66931 -27.32482 -24.91381 -24.35220 -23.73000 -22.08513 -21.72558 -20.70880 -19.81536 -19.39688 -18.53586 -17.83518 -17.62520 -17.38577 -17.02016 -16.87752 -16.47997 -16.00537 -15.84271 -15.78969 -15.46029 -15.10192 -14.82328 -14.52128 -14.38190 -14.22644 -13.92604 -13.57975 -13.25973 -13.16473 -12.88889 -12.67976 -12.59532 -12.07603 -12.02645 -11.81458 -11.78499 -11.65691 -11.47232 -11.28880 -11.14050 -10.95382 -10.71583 -10.44891 -10.26084 -9.71255 -8.67534 -8.34048 -6.12954 0.16107 1.11797 1.23385 1.36761 1.42953 1.49080 1.58067 1.61450 1.92327 2.14915 2.26791 2.30585 2.97970 2.99855 3.32332 3.43094 3.64837 3.75999 3.91598 3.96037 4.01403 4.09490 4.18814 4.31853 4.49052 4.51127 4.55990 4.71336 4.77972 4.81056 4.93150 5.00913 5.12640 5.18588 5.32810 5.38417 5.41896 5.53129 5.95795 6.13900 6.20174 6.50495 6.78892 7.05779 7.06622 7.24984 8.75334 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025755 B = 0.002118 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.912501 B =13213.815940 C =14036.034374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.009 3.991 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.161 6.161 10 C -0.126 4.126 11 C 0.531 3.469 12 O -0.565 6.565 13 N -0.703 5.703 14 C 0.138 3.862 15 H 0.053 0.947 16 C -0.117 4.117 17 C -0.125 4.125 18 C 0.080 3.920 19 N -0.588 5.588 20 C 0.596 3.404 21 O -0.566 6.566 22 C 0.129 3.871 23 N -0.522 5.522 24 C 0.224 3.776 25 N -0.377 5.377 26 H 0.475 0.525 27 N -0.260 5.260 28 C 0.105 3.895 29 H 0.271 0.729 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.422 0.578 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.284 0.716 40 H 0.050 0.950 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.364 -35.790 0.995 38.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.066 5.934 10 C -0.277 4.277 11 C 0.317 3.683 12 O -0.443 6.443 13 N -0.358 5.358 14 C 0.031 3.969 15 H 0.071 0.929 16 C -0.155 4.155 17 C -0.164 4.164 18 C -0.041 4.041 19 N -0.321 5.321 20 C 0.381 3.619 21 O -0.441 6.441 22 C -0.150 4.150 23 N -0.247 5.247 24 C -0.073 4.073 25 N -0.103 5.103 26 H 0.327 0.673 27 N -0.103 5.103 28 C -0.019 4.019 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.261 0.739 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.299 0.701 40 H 0.069 0.931 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.114 -35.172 1.112 36.903 hybrid contribution 1.350 1.018 0.122 1.695 sum 12.464 -34.155 1.234 36.379 Atomic orbital electron populations 1.70207 1.08107 1.28589 1.48080 1.26202 0.95991 1.03536 0.93782 0.84906 0.78169 0.75762 0.78826 1.19182 1.20460 1.17985 1.23204 0.95385 0.91769 1.58757 0.89620 1.85748 1.10947 0.99624 1.97067 1.23352 1.03380 0.93844 1.07115 1.20236 0.86277 0.86984 0.74791 1.90745 1.17808 1.86060 1.49671 1.45653 1.10430 1.04074 1.75629 1.21138 0.98988 0.81492 0.95243 0.92858 1.21844 0.97423 0.93565 1.02670 1.21916 1.02310 0.96227 0.95910 1.22832 0.94916 0.93145 0.93245 1.47862 1.20261 1.08733 1.55282 1.17007 0.81471 0.84997 0.78384 1.90855 1.48589 1.53796 1.50882 1.23285 0.89951 0.94264 1.07483 1.71263 1.23966 1.08737 1.20782 1.27639 0.89580 0.93181 0.96912 1.45334 1.11265 1.09054 1.44623 0.67270 1.73983 1.23694 0.92699 1.19956 1.21904 1.01217 0.80597 0.98173 0.92053 0.86920 0.86676 0.73937 0.87871 0.89476 0.86091 0.93045 0.88465 0.85483 0.70104 0.93123 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.95 13.22 21.65 0.29 -57.67 16 2 C 0.01 0.54 5.49 84.86 0.47 1.01 16 3 Si 1.00 44.59 29.55 68.60 2.03 46.62 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.54 -31.75 9.50 67.95 0.65 -31.11 16 8 H 0.09 4.59 7.80 -2.91 -0.02 4.57 16 9 S -0.16 -9.32 20.57 -56.49 -1.16 -10.49 16 10 C -0.13 -5.11 6.16 71.23 0.44 -4.67 16 11 C 0.53 20.66 7.81 87.65 0.68 21.35 16 12 O -0.57 -28.68 15.53 -3.04 -0.05 -28.73 16 13 N -0.70 -17.97 5.08 -442.84 -2.25 -20.22 16 14 C 0.14 3.36 2.59 44.92 0.12 3.47 16 15 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 16 C -0.12 -1.48 5.36 30.62 0.16 -1.32 16 17 C -0.13 -1.38 6.08 30.68 0.19 -1.19 16 18 C 0.08 1.09 6.10 86.36 0.53 1.62 16 19 N -0.59 -14.50 2.98 -823.11 -2.45 -16.95 16 20 C 0.60 19.24 7.69 86.79 0.67 19.91 16 21 O -0.57 -24.86 16.52 -3.88 -0.06 -24.93 16 22 C 0.13 3.18 7.66 137.13 1.05 4.23 16 23 N -0.52 -12.23 11.41 -193.04 -2.20 -14.44 16 24 C 0.22 1.78 13.14 180.30 2.37 4.15 16 25 N -0.38 -1.78 6.93 -60.38 -0.42 -2.20 16 26 H 0.48 -2.81 8.96 -219.79 -1.97 -4.78 16 27 N -0.26 -3.67 8.77 -52.44 -0.46 -4.13 16 28 C 0.11 2.86 5.99 86.22 0.52 3.37 16 29 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 31 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 32 H 0.42 6.98 8.60 -92.71 -0.80 6.18 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.13 1.66 4.18 -28.18 -0.12 1.55 16 39 H 0.28 -1.26 8.06 -2.91 -0.02 -1.28 16 40 H 0.05 1.96 7.00 -2.39 -0.02 1.94 16 41 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -104.47 361.09 -0.68 -105.15 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -1.77 Total: 7.15 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 7.83 Total: 20.82 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -7.50 Total: -115.60 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.11 Total: -53.65 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.16 Total: -10.49 kcal Total: -104.47 -0.68 -105.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704500134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.422 kcal (2) G-P(sol) polarization free energy of solvation -104.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds