Wall clock time and date at job start Tue Mar 31 2020 22:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30829 * 125.96013 * 2 1 4 4 C 1.33241 * 109.82931 * 180.02562 * 3 2 1 5 5 C 1.50708 * 125.52731 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47027 * 90.00356 * 5 4 3 7 7 O 1.21287 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34767 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99895 * 179.97438 * 8 6 5 10 10 C 1.53501 * 114.20747 * 204.99407 * 9 8 6 11 11 N 1.47065 * 87.98741 * 220.14872 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31634 * 120.00298 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99861 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47644 * 89.99884 * 20 18 16 22 22 H 1.48506 * 109.47143 * 209.99830 * 20 18 16 23 23 H 1.48501 * 109.47120 * 329.99545 * 20 18 16 24 24 C 1.47067 * 87.88381 * 27.34024 * 11 10 9 25 25 N 1.30717 * 108.94777 * 0.26519 * 4 3 2 26 26 N 1.34426 * 125.96422 * 180.02562 * 2 1 3 27 27 H 0.97003 * 126.81765 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46726 * 89.97826 * 1 2 3 29 29 H 1.08998 * 109.46785 * 209.97593 * 1 2 3 30 30 H 1.09000 * 109.47107 * 329.97909 * 1 2 3 31 31 H 1.08992 * 109.46998 * 330.00275 * 5 4 3 32 32 H 1.08998 * 109.46593 * 210.00248 * 5 4 3 33 33 H 0.97001 * 120.00444 * 359.97438 * 8 6 5 34 34 H 1.09001 * 113.28417 * 338.06104 * 9 8 6 35 35 H 1.09001 * 113.46643 * 105.36573 * 10 9 8 36 36 H 1.09004 * 113.51834 * 334.94016 * 10 9 8 37 37 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 38 38 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 39 39 H 0.96995 * 120.00138 * 180.02562 * 19 18 16 40 40 H 1.09010 * 113.46411 * 87.43777 * 24 11 10 41 41 H 1.08997 * 113.47100 * 217.87349 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7373 1.6237 -0.0013 6 6 5.1320 1.9355 1.4193 7 8 4.5140 1.4470 2.3415 8 7 6.1710 2.7579 1.6649 9 6 6.5544 3.0614 3.0459 10 6 7.2899 4.3980 3.2156 11 7 8.1745 3.7292 4.1816 12 6 8.9099 4.1058 5.2464 13 8 8.9254 5.2682 5.5921 14 6 9.7138 3.0828 6.0067 15 16 10.5859 3.8929 7.3703 16 6 11.4189 2.5057 8.0677 17 1 11.2950 1.5258 7.6310 18 6 12.2394 2.6734 9.1746 19 7 12.8614 1.6371 9.6960 20 14 12.4599 4.3697 9.9253 21 1 11.4262 4.5874 10.9690 22 1 13.8095 4.4686 10.5371 23 1 12.3195 5.4016 8.8667 24 6 7.9086 2.4697 3.4704 25 7 3.6195 -0.6168 -0.0066 26 7 2.2965 -1.0880 -0.0005 27 1 2.0094 -2.0146 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.4699 2.5470 -0.5151 32 1 5.5740 1.1509 -0.5155 33 1 6.6651 3.1489 0.9274 34 1 5.7485 2.9007 3.7620 35 1 6.6734 5.1793 3.6602 36 1 7.8040 4.7293 2.3133 37 1 10.4382 2.6191 5.3371 38 1 9.0461 2.3188 6.4048 39 1 13.4345 1.7542 10.4697 40 1 8.5856 2.2917 2.6348 41 1 7.8192 1.6081 4.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704517582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:55 Heat of formation + Delta-G solvation = 56.015222 kcal Electronic energy + Delta-G solvation = -25121.392876 eV Core-core repulsion = 21166.124620 eV Total energy + Delta-G solvation = -3955.268256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.57896 -40.82538 -39.43126 -37.64887 -34.22247 -34.09354 -32.79275 -32.43879 -30.89882 -30.09145 -28.31863 -27.53123 -26.16238 -25.58583 -23.02689 -21.82499 -21.30423 -20.55688 -19.18555 -18.33754 -17.75920 -17.62811 -17.05922 -16.69598 -15.95900 -15.84000 -15.39063 -15.14291 -14.92278 -14.63111 -14.40150 -14.05714 -13.95723 -13.48065 -13.33143 -13.26516 -13.11918 -12.94057 -12.78458 -12.70210 -12.49470 -12.25392 -11.93880 -11.38243 -11.25789 -11.00580 -10.65046 -10.62335 -10.45391 -10.27538 -9.88607 -9.84498 -9.63245 -9.42650 -9.00338 -8.77365 -8.51454 -6.92964 -6.28675 -4.01005 1.15135 2.12261 2.22022 2.24923 2.50363 2.80425 2.95327 3.20807 3.33761 3.49154 3.50693 3.57518 3.98993 4.05312 4.27116 4.32706 4.40818 4.44544 4.67261 4.69799 4.83088 4.83782 4.86196 5.01066 5.10303 5.13955 5.15455 5.24610 5.31875 5.44973 5.59430 5.75809 5.79019 5.80290 5.95933 6.01340 6.08276 6.60486 7.02282 7.66150 7.68080 7.80469 7.94307 8.35507 8.42065 9.17226 10.80502 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.001711 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.318174 B =16365.190661 C =16931.331833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.285 3.715 3 N -0.532 5.532 4 C 0.247 3.753 5 C -0.048 4.048 6 C 0.525 3.475 7 O -0.522 6.522 8 N -0.716 5.716 9 C 0.112 3.888 10 C 0.098 3.902 11 N -0.649 5.649 12 C 0.566 3.434 13 O -0.513 6.513 14 C -0.116 4.116 15 S -0.141 6.141 16 C -0.522 4.522 17 H 0.089 0.911 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.086 3.914 25 N -0.302 5.302 26 N -0.480 5.480 27 H 0.441 0.559 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.405 0.595 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.089 0.911 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.318 -3.368 -27.090 35.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 N -0.261 5.261 4 C -0.036 4.036 5 C -0.090 4.090 6 C 0.310 3.690 7 O -0.397 6.397 8 N -0.369 5.369 9 C 0.006 3.994 10 C -0.026 4.026 11 N -0.388 5.388 12 C 0.355 3.645 13 O -0.387 6.387 14 C -0.266 4.266 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.107 0.893 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.039 4.039 25 N -0.131 5.131 26 N -0.199 5.199 27 H 0.286 0.714 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.241 0.759 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.899 -2.019 -25.546 34.366 hybrid contribution 0.272 -1.413 -0.276 1.465 sum -22.627 -3.432 -25.822 34.504 Atomic orbital electron populations 1.20414 0.83514 1.05262 1.04549 1.24378 0.96659 0.82705 0.95582 1.70292 1.01194 1.29605 1.24999 1.23205 0.92641 0.89765 0.98012 1.19879 0.94075 0.99210 0.95882 1.20237 0.79632 0.78360 0.90775 1.90779 1.52360 1.50467 1.46067 1.45693 1.33523 1.49455 1.08219 1.22908 0.96626 0.95646 0.84269 1.23220 0.90552 0.96237 0.92573 1.49273 1.48957 1.12119 1.28424 1.19870 0.77280 0.89276 0.78043 1.90721 1.62435 1.19296 1.66211 1.23218 1.01454 1.00609 1.01331 1.84779 1.58151 1.16178 1.32361 1.22304 1.32440 0.94477 1.17696 0.89345 1.24708 0.93837 0.97373 0.95340 1.69938 1.29021 1.29868 1.22783 0.86735 0.78458 0.85060 0.81602 1.19173 1.19896 1.15924 1.23558 0.94626 0.89558 0.96181 1.77983 0.96856 1.12126 1.26167 1.47935 1.04180 1.10126 1.57638 0.71361 0.88916 0.89761 0.88202 0.85682 0.86099 0.75937 0.84917 0.89573 0.89586 0.88454 0.88415 0.91922 0.89344 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.29 2.14 8.24 -155.70 -1.28 0.86 16 3 N -0.53 -5.52 11.19 -8.16 -0.09 -5.61 16 4 C 0.25 2.52 6.63 -156.85 -1.04 1.48 16 5 C -0.05 -0.31 6.33 -29.03 -0.18 -0.49 16 6 C 0.53 4.74 7.82 -10.99 -0.09 4.65 16 7 O -0.52 -7.37 15.63 5.55 0.09 -7.29 16 8 N -0.72 -4.51 5.39 -53.48 -0.29 -4.80 16 9 C 0.11 0.99 4.62 -67.67 -0.31 0.67 16 10 C 0.10 0.95 8.38 -8.51 -0.07 0.87 16 11 N -0.65 -8.82 3.69 -185.07 -0.68 -9.50 16 12 C 0.57 10.59 8.10 -10.99 -0.09 10.50 16 13 O -0.51 -11.50 16.64 5.56 0.09 -11.40 16 14 C -0.12 -2.33 5.98 36.00 0.22 -2.12 16 15 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 16 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 17 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 18 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 20 Si 0.86 21.97 27.74 -169.99 -4.72 17.26 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 24 C 0.09 0.85 8.25 -8.38 -0.07 0.78 16 25 N -0.30 -3.21 12.80 32.43 0.41 -2.79 16 26 N -0.48 -3.56 7.45 32.62 0.24 -3.31 16 27 H 0.44 1.61 8.96 -182.33 -1.63 -0.03 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.41 1.10 8.76 -40.82 -0.36 0.74 16 34 H 0.13 1.45 7.45 -51.93 -0.39 1.06 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 38 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -42.21 375.44 -9.43 -51.64 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -6.61 Total: -3.45 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.33 Total: 5.20 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.37 Total: -51.98 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -42.21 -9.43 -51.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704517582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.659 kcal (2) G-P(sol) polarization free energy of solvation -42.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds