Wall clock time and date at job start Tue Mar 31 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30829 * 125.96013 * 2 1 4 4 C 1.33241 * 109.82931 * 180.02562 * 3 2 1 5 5 C 1.50708 * 125.52731 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47027 * 90.00356 * 5 4 3 7 7 O 1.21287 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34767 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99895 * 179.97438 * 8 6 5 10 10 C 1.53501 * 114.20747 * 204.99407 * 9 8 6 11 11 N 1.47065 * 87.98741 * 220.14872 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31634 * 120.00298 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99861 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47644 * 89.99884 * 20 18 16 22 22 H 1.48506 * 109.47143 * 209.99830 * 20 18 16 23 23 H 1.48501 * 109.47120 * 329.99545 * 20 18 16 24 24 C 1.47067 * 87.88381 * 27.34024 * 11 10 9 25 25 N 1.30717 * 108.94777 * 0.26519 * 4 3 2 26 26 N 1.34426 * 125.96422 * 180.02562 * 2 1 3 27 27 H 0.97003 * 126.81765 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46726 * 89.97826 * 1 2 3 29 29 H 1.08998 * 109.46785 * 209.97593 * 1 2 3 30 30 H 1.09000 * 109.47107 * 329.97909 * 1 2 3 31 31 H 1.08992 * 109.46998 * 330.00275 * 5 4 3 32 32 H 1.08998 * 109.46593 * 210.00248 * 5 4 3 33 33 H 0.97001 * 120.00444 * 359.97438 * 8 6 5 34 34 H 1.09001 * 113.28417 * 338.06104 * 9 8 6 35 35 H 1.09001 * 113.46643 * 105.36573 * 10 9 8 36 36 H 1.09004 * 113.51834 * 334.94016 * 10 9 8 37 37 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 38 38 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 39 39 H 0.96995 * 120.00138 * 180.02562 * 19 18 16 40 40 H 1.09010 * 113.46411 * 87.43777 * 24 11 10 41 41 H 1.08997 * 113.47100 * 217.87349 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7373 1.6237 -0.0013 6 6 5.1320 1.9355 1.4193 7 8 4.5140 1.4470 2.3415 8 7 6.1710 2.7579 1.6649 9 6 6.5544 3.0614 3.0459 10 6 7.2899 4.3980 3.2156 11 7 8.1745 3.7292 4.1816 12 6 8.9099 4.1058 5.2464 13 8 8.9254 5.2682 5.5921 14 6 9.7138 3.0828 6.0067 15 16 10.5859 3.8929 7.3703 16 6 11.4189 2.5057 8.0677 17 1 11.2950 1.5258 7.6310 18 6 12.2394 2.6734 9.1746 19 7 12.8614 1.6371 9.6960 20 14 12.4599 4.3697 9.9253 21 1 11.4262 4.5874 10.9690 22 1 13.8095 4.4686 10.5371 23 1 12.3195 5.4016 8.8667 24 6 7.9086 2.4697 3.4704 25 7 3.6195 -0.6168 -0.0066 26 7 2.2965 -1.0880 -0.0005 27 1 2.0094 -2.0146 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.4699 2.5470 -0.5151 32 1 5.5740 1.1509 -0.5155 33 1 6.6651 3.1489 0.9274 34 1 5.7485 2.9007 3.7620 35 1 6.6734 5.1793 3.6602 36 1 7.8040 4.7293 2.3133 37 1 10.4382 2.6191 5.3371 38 1 9.0461 2.3188 6.4048 39 1 13.4345 1.7542 10.4697 40 1 8.5856 2.2917 2.6348 41 1 7.8192 1.6081 4.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704517582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:54 Heat of formation + Delta-G solvation = 21.859819 kcal Electronic energy + Delta-G solvation = -25122.873965 eV Core-core repulsion = 21166.124620 eV Total energy + Delta-G solvation = -3956.749345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.16323 -41.76538 -40.38814 -38.90733 -35.03694 -34.69943 -34.65070 -33.34766 -32.04902 -30.93085 -29.05740 -28.42574 -27.86076 -26.99750 -23.85534 -22.50030 -21.98248 -21.22894 -20.49087 -19.58022 -18.90365 -18.30312 -18.20501 -17.74933 -17.20824 -16.87686 -16.56721 -16.33499 -16.25787 -15.76840 -15.42291 -15.11504 -14.92266 -14.61942 -14.39407 -14.19557 -13.89556 -13.68722 -13.62974 -13.60577 -13.36909 -13.24252 -13.06613 -13.02384 -12.74161 -12.69013 -12.22982 -11.88543 -11.36187 -11.19312 -11.16909 -11.09995 -10.91733 -10.59427 -10.45944 -10.18414 -9.88022 -9.04299 -8.53734 -6.25949 0.56816 0.88925 1.30447 1.35917 1.41690 1.48681 1.54191 1.62620 1.74539 1.87551 2.23250 2.38537 2.63084 2.84305 3.03029 3.19333 3.43567 3.55240 3.76047 3.83715 3.95569 4.03506 4.17153 4.36569 4.40878 4.44001 4.46759 4.51981 4.58522 4.70695 4.76408 4.77161 4.89194 5.06145 5.24261 5.38024 5.39640 5.68219 6.08609 6.19666 6.41759 6.53338 6.90778 6.96471 7.06820 7.20712 8.58724 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.001711 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.318174 B =16365.190661 C =16931.331833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.284 3.716 3 N -0.568 5.568 4 C 0.231 3.769 5 C -0.044 4.044 6 C 0.527 3.473 7 O -0.579 6.579 8 N -0.693 5.693 9 C 0.126 3.874 10 C 0.102 3.898 11 N -0.649 5.649 12 C 0.567 3.433 13 O -0.560 6.560 14 C -0.103 4.103 15 S -0.170 6.170 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.047 3.953 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.256 1.256 23 H -0.236 1.236 24 C 0.084 3.916 25 N -0.339 5.339 26 N -0.477 5.477 27 H 0.454 0.546 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.428 0.572 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.278 0.722 40 H 0.123 0.877 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.249 -2.708 -29.540 38.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 N -0.299 5.299 4 C -0.052 4.052 5 C -0.086 4.086 6 C 0.313 3.687 7 O -0.458 6.458 8 N -0.347 5.347 9 C 0.019 3.981 10 C -0.021 4.021 11 N -0.386 5.386 12 C 0.356 3.644 13 O -0.438 6.438 14 C -0.254 4.254 15 S 0.056 5.944 16 C -0.680 4.680 17 H 0.079 0.921 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.180 1.180 23 H -0.160 1.160 24 C -0.040 4.040 25 N -0.169 5.169 26 N -0.197 5.197 27 H 0.302 0.698 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.267 0.733 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.140 0.860 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.840 -1.398 -28.083 36.864 hybrid contribution 0.395 -1.763 0.317 1.834 sum -23.445 -3.161 -27.766 36.478 Atomic orbital electron populations 1.20636 0.80359 1.06265 1.06183 1.25205 0.98263 0.82145 0.93729 1.70305 1.01773 1.31125 1.26650 1.23857 0.93638 0.90168 0.97523 1.20066 0.94020 1.00182 0.94291 1.20701 0.79156 0.77564 0.91265 1.90765 1.54364 1.52776 1.47896 1.45419 1.32881 1.48570 1.07789 1.22445 0.95415 0.95035 0.85248 1.23515 0.89797 0.96159 0.92581 1.49139 1.47248 1.14754 1.27424 1.19378 0.77798 0.88012 0.79212 1.90696 1.64513 1.20608 1.67955 1.23166 1.01682 1.00862 0.99643 1.84658 1.58776 1.15836 1.35100 1.22441 1.32893 0.94604 1.18017 0.92100 1.25571 0.93542 1.00999 0.95776 1.70015 1.29842 1.31890 1.23579 0.85859 0.79232 0.80493 0.80736 1.18728 1.18040 1.15987 1.23885 0.95700 0.87869 0.96517 1.77871 0.98720 1.12737 1.27553 1.47900 1.03427 1.11013 1.57358 0.69767 0.86799 0.87390 0.88490 0.82842 0.83187 0.73255 0.87224 0.90149 0.85748 0.86992 0.87646 0.91279 0.85961 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 71.24 0.75 0.47 16 2 C 0.28 4.01 8.24 138.23 1.14 5.15 16 3 N -0.57 -11.44 11.19 -179.71 -2.01 -13.45 16 4 C 0.23 4.52 6.63 138.63 0.92 5.44 16 5 C -0.04 -0.47 6.33 29.10 0.18 -0.28 16 6 C 0.53 8.58 7.82 87.66 0.69 9.26 16 7 O -0.58 -16.28 15.63 -3.05 -0.05 -16.33 16 8 N -0.69 -6.62 5.39 -441.51 -2.38 -9.00 16 9 C 0.13 1.95 4.62 45.55 0.21 2.16 16 10 C 0.10 1.67 8.38 83.18 0.70 2.37 16 11 N -0.65 -16.38 3.69 -857.84 -3.16 -19.54 16 12 C 0.57 20.77 8.10 87.66 0.71 21.48 16 13 O -0.56 -24.96 16.64 -3.02 -0.05 -25.01 16 14 C -0.10 -4.11 5.98 71.24 0.43 -3.68 16 15 S -0.17 -8.85 18.55 -56.49 -1.05 -9.89 16 16 C -0.53 -31.63 10.04 67.95 0.68 -30.95 16 17 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 18 C 0.05 2.78 5.50 84.86 0.47 3.25 16 19 N -0.92 -56.34 13.97 21.65 0.30 -56.04 16 20 Si 0.92 45.49 27.74 68.60 1.90 47.39 16 21 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 24 C 0.08 1.44 8.25 83.26 0.69 2.13 16 25 N -0.34 -7.04 12.80 -51.33 -0.66 -7.69 16 26 N -0.48 -6.76 7.45 -50.71 -0.38 -7.14 16 27 H 0.45 2.99 8.96 -213.09 -1.91 1.08 16 28 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.43 0.40 8.76 -92.71 -0.81 -0.42 16 34 H 0.11 2.34 7.45 -2.39 -0.02 2.32 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 38 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 39 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -95.56 375.44 -1.64 -97.19 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -1.66 Total: 2.72 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 7.56 Total: 16.79 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -8.29 Total: -112.86 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.10 Total: -41.34 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.89 kcal Total: -95.56 -1.64 -97.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704517582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.052 kcal (2) G-P(sol) polarization free energy of solvation -95.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds