Wall clock time and date at job start Tue Mar 31 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00211 * 2 1 4 4 H 1.48491 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46765 * 300.00047 * 3 2 1 6 6 H 1.48502 * 109.47202 * 59.99648 * 3 2 1 7 7 C 1.38803 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99945 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99760 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00299 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99757 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99789 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46903 * 180.02562 * 14 13 11 16 16 C 1.53496 * 114.20680 * 185.00093 * 15 14 13 17 17 N 1.47056 * 87.98662 * 220.14654 * 16 15 14 18 18 C 1.34781 * 136.05783 * 207.08294 * 17 16 15 19 19 O 1.21274 * 120.00170 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99767 * 179.97438 * 18 17 16 21 21 N 1.46499 * 109.46757 * 180.02562 * 20 18 17 22 22 C 1.34434 * 126.82568 * 125.00212 * 21 20 18 23 23 N 1.30825 * 108.08133 * 179.73483 * 22 21 20 24 24 C 1.33251 * 109.82850 * 359.97438 * 23 22 21 25 25 N 1.30709 * 108.94310 * 0.02562 * 24 23 22 26 26 C 1.47071 * 87.88743 * 27.34204 * 17 16 15 27 27 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46848 * 59.99752 * 10 9 7 29 29 H 1.08997 * 109.46953 * 300.00064 * 10 9 7 30 30 H 0.97000 * 120.00460 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47440 * 60.00502 * 14 13 11 32 32 H 1.09005 * 109.47240 * 299.99875 * 14 13 11 33 33 H 1.08999 * 113.28206 * 318.06572 * 15 14 13 34 34 H 1.08999 * 113.46793 * 105.36133 * 16 15 14 35 35 H 1.09010 * 113.51896 * 334.93455 * 16 15 14 36 36 H 1.09000 * 109.47205 * 60.00381 * 20 18 17 37 37 H 1.09001 * 109.47271 * 299.99790 * 20 18 17 38 38 H 1.08001 * 125.95478 * 359.76628 * 22 21 20 39 39 H 1.07997 * 125.52448 * 179.97438 * 24 23 22 40 40 H 1.08998 * 113.47047 * 87.43858 * 26 17 16 41 41 H 1.09004 * 113.46509 * 217.88137 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0008 14 6 2.3302 -7.7151 0.0008 15 6 3.5023 -8.6986 0.0009 16 6 3.0879 -10.1715 -0.1210 17 7 4.1286 -10.4923 0.8672 18 6 4.8933 -11.5632 1.1585 19 8 4.7850 -12.5807 0.5076 20 6 5.8838 -11.4959 2.2923 21 7 6.5860 -12.7768 2.4040 22 6 7.9161 -12.9710 2.3840 23 7 8.1413 -14.2529 2.5159 24 6 6.9849 -14.9063 2.6229 25 7 6.0036 -14.0452 2.5597 26 6 3.9631 -9.1323 1.4022 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8894 30 1 3.8008 -6.1836 0.0004 31 1 1.7213 -7.8751 -0.8890 32 1 1.7219 -7.8753 0.8910 33 1 4.3111 -8.4050 -0.6681 34 1 3.2794 -10.5961 -1.1065 35 1 2.0764 -10.3697 0.2338 36 1 5.3567 -11.2877 3.2234 37 1 6.6053 -10.7022 2.0979 38 1 8.6676 -12.2026 2.2781 39 1 6.8762 -15.9742 2.7417 40 1 3.1824 -9.0556 2.1590 41 1 4.9003 -8.6717 1.7145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704562383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:31 Heat of formation + Delta-G solvation = 71.378564 kcal Electronic energy + Delta-G solvation = -24895.935300 eV Core-core repulsion = 20941.333249 eV Total energy + Delta-G solvation = -3954.602051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49458 -41.06778 -39.28574 -38.44179 -34.66120 -34.50807 -32.48311 -31.64774 -31.42030 -29.66701 -28.29689 -26.61985 -25.83881 -25.38468 -22.69926 -22.41421 -21.42937 -20.50852 -19.61599 -18.06436 -17.97256 -17.66114 -16.93086 -16.42832 -16.34802 -16.13189 -15.50539 -15.42053 -15.04775 -14.85744 -14.72810 -14.47377 -14.06081 -13.90701 -13.57733 -13.31494 -13.18834 -13.05465 -12.74027 -12.55731 -12.30062 -11.92930 -11.84611 -11.19430 -11.11499 -11.07733 -10.81688 -10.76829 -10.44485 -10.19604 -10.01331 -9.86367 -9.53727 -9.33660 -9.13682 -9.03669 -8.29819 -6.56365 -6.27269 -3.98280 1.14381 1.62096 1.92999 2.25602 2.59105 2.90570 2.98346 3.17406 3.22689 3.27101 3.47627 3.58759 3.78174 3.87955 3.90252 4.14892 4.26936 4.32877 4.42433 4.44496 4.66164 4.74261 4.80290 4.85034 5.04520 5.06697 5.08284 5.11550 5.33241 5.46490 5.58038 5.74905 5.75287 5.80736 6.00852 6.05555 6.25947 6.44706 7.03391 7.47919 7.53974 7.56101 7.65363 8.29761 8.49008 9.18373 10.80191 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.001510 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.511871 B =18539.232720 C =19266.824474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.133 3.867 15 C -0.135 4.135 16 C 0.117 3.883 17 N -0.650 5.650 18 C 0.530 3.470 19 O -0.509 6.509 20 C 0.119 3.881 21 N -0.373 5.373 22 C 0.257 3.743 23 N -0.543 5.543 24 C 0.195 3.805 25 N -0.292 5.292 26 C 0.099 3.901 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.220 0.780 39 H 0.218 0.782 40 H 0.096 0.904 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.457 -22.305 4.887 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.395 5.395 14 C 0.008 3.992 15 C -0.154 4.154 16 C -0.006 4.006 17 N -0.387 5.387 18 C 0.317 3.683 19 O -0.382 6.382 20 C -0.007 4.007 21 N -0.165 5.165 22 C -0.040 4.040 23 N -0.270 5.270 24 C -0.108 4.108 25 N -0.118 5.118 26 C -0.023 4.023 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.237 0.763 39 H 0.234 0.766 40 H 0.114 0.886 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.890 -23.609 4.637 27.295 hybrid contribution 2.470 1.662 0.003 2.977 sum 15.360 -21.947 4.639 27.187 Atomic orbital electron populations 1.70022 1.05965 1.27413 1.46820 1.24994 0.95021 0.99056 0.94484 0.86116 0.79556 0.81870 0.77943 1.19627 1.20545 1.20555 1.22902 0.94928 0.91612 1.59006 0.90853 1.85428 1.04864 0.96411 1.96727 1.23528 1.06636 0.95319 1.04948 1.20327 0.86503 0.86293 0.75072 1.90720 1.15381 1.85579 1.47257 1.45969 1.09981 1.05212 1.78306 1.21137 0.94462 0.80338 1.03251 1.23280 0.99751 0.94628 0.97740 1.22961 0.92147 0.91609 0.93848 1.49533 1.39097 1.13593 1.36467 1.19938 0.81703 0.81701 0.84937 1.90829 1.67924 1.28855 1.50622 1.21461 0.96768 0.82625 0.99873 1.50003 1.05686 1.06380 1.54407 1.26120 0.85315 0.95764 0.96812 1.70548 1.28930 1.03220 1.24318 1.26060 0.85051 1.01147 0.98577 1.78202 1.21985 0.88138 1.23485 1.23379 1.02303 0.79569 0.97077 0.92189 0.89189 0.89184 0.76743 0.90643 0.90867 0.86757 0.89757 0.88859 0.86207 0.85072 0.76336 0.76595 0.88589 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.81 6.16 36.00 0.22 -2.58 16 11 C 0.53 8.67 7.85 -10.99 -0.09 8.58 16 12 O -0.52 -10.69 15.86 5.55 0.09 -10.60 16 13 N -0.74 -7.41 5.56 -60.29 -0.33 -7.75 16 14 C 0.13 1.04 5.59 -4.04 -0.02 1.02 16 15 C -0.13 -0.61 4.11 -89.97 -0.37 -0.98 16 16 C 0.12 0.69 8.19 -8.51 -0.07 0.62 16 17 N -0.65 -4.04 3.69 -185.05 -0.68 -4.72 16 18 C 0.53 4.49 8.12 -10.98 -0.09 4.40 16 19 O -0.51 -6.96 16.53 5.56 0.09 -6.87 16 20 C 0.12 0.56 6.86 -5.19 -0.04 0.53 16 21 N -0.37 -2.99 3.40 -63.81 -0.22 -3.21 16 22 C 0.26 1.71 12.63 -90.65 -1.14 0.57 16 23 N -0.54 -5.10 11.19 -15.83 -0.18 -5.28 16 24 C 0.19 1.82 13.03 -91.81 -1.20 0.63 16 25 N -0.29 -3.22 11.83 29.29 0.35 -2.88 16 26 C 0.10 0.34 8.00 -8.37 -0.07 0.28 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 29 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 30 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.61 7.81 -51.93 -0.41 0.21 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.51 8.11 -51.92 -0.42 0.09 16 36 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.13 0.06 8.09 -51.93 -0.42 -0.36 16 38 H 0.22 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.22 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.10 0.31 7.88 -51.93 -0.41 -0.10 16 41 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -41.67 377.83 -9.70 -51.38 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -5.35 Total: -3.52 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.66 Total: 0.58 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.33 Total: -48.58 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.18 Total: -17.47 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -41.67 -9.70 -51.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704562383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.756 kcal (2) G-P(sol) polarization free energy of solvation -41.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds