Wall clock time and date at job start Tue Mar 31 2020 22:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00211 * 2 1 4 4 H 1.48491 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46765 * 300.00047 * 3 2 1 6 6 H 1.48502 * 109.47202 * 59.99648 * 3 2 1 7 7 C 1.38803 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99945 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99760 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00299 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99757 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99789 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46903 * 180.02562 * 14 13 11 16 16 C 1.53496 * 114.20680 * 185.00093 * 15 14 13 17 17 N 1.47056 * 87.98662 * 220.14654 * 16 15 14 18 18 C 1.34781 * 136.05783 * 207.08294 * 17 16 15 19 19 O 1.21274 * 120.00170 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99767 * 179.97438 * 18 17 16 21 21 N 1.46499 * 109.46757 * 180.02562 * 20 18 17 22 22 C 1.34434 * 126.82568 * 125.00212 * 21 20 18 23 23 N 1.30825 * 108.08133 * 179.73483 * 22 21 20 24 24 C 1.33251 * 109.82850 * 359.97438 * 23 22 21 25 25 N 1.30709 * 108.94310 * 0.02562 * 24 23 22 26 26 C 1.47071 * 87.88743 * 27.34204 * 17 16 15 27 27 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46848 * 59.99752 * 10 9 7 29 29 H 1.08997 * 109.46953 * 300.00064 * 10 9 7 30 30 H 0.97000 * 120.00460 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47440 * 60.00502 * 14 13 11 32 32 H 1.09005 * 109.47240 * 299.99875 * 14 13 11 33 33 H 1.08999 * 113.28206 * 318.06572 * 15 14 13 34 34 H 1.08999 * 113.46793 * 105.36133 * 16 15 14 35 35 H 1.09010 * 113.51896 * 334.93455 * 16 15 14 36 36 H 1.09000 * 109.47205 * 60.00381 * 20 18 17 37 37 H 1.09001 * 109.47271 * 299.99790 * 20 18 17 38 38 H 1.08001 * 125.95478 * 359.76628 * 22 21 20 39 39 H 1.07997 * 125.52448 * 179.97438 * 24 23 22 40 40 H 1.08998 * 113.47047 * 87.43858 * 26 17 16 41 41 H 1.09004 * 113.46509 * 217.88137 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0008 14 6 2.3302 -7.7151 0.0008 15 6 3.5023 -8.6986 0.0009 16 6 3.0879 -10.1715 -0.1210 17 7 4.1286 -10.4923 0.8672 18 6 4.8933 -11.5632 1.1585 19 8 4.7850 -12.5807 0.5076 20 6 5.8838 -11.4959 2.2923 21 7 6.5860 -12.7768 2.4040 22 6 7.9161 -12.9710 2.3840 23 7 8.1413 -14.2529 2.5159 24 6 6.9849 -14.9063 2.6229 25 7 6.0036 -14.0452 2.5597 26 6 3.9631 -9.1323 1.4022 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8894 30 1 3.8008 -6.1836 0.0004 31 1 1.7213 -7.8751 -0.8890 32 1 1.7219 -7.8753 0.8910 33 1 4.3111 -8.4050 -0.6681 34 1 3.2794 -10.5961 -1.1065 35 1 2.0764 -10.3697 0.2338 36 1 5.3567 -11.2877 3.2234 37 1 6.6053 -10.7022 2.0979 38 1 8.6676 -12.2026 2.2781 39 1 6.8762 -15.9742 2.7417 40 1 3.1824 -9.0556 2.1590 41 1 4.9003 -8.6717 1.7145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704562383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:30 Heat of formation + Delta-G solvation = 40.293628 kcal Electronic energy + Delta-G solvation = -24897.283244 eV Core-core repulsion = 20941.333249 eV Total energy + Delta-G solvation = -3955.949995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.03291 -41.59697 -40.42992 -39.15933 -35.67898 -35.03286 -34.55296 -32.32313 -32.15494 -30.75341 -28.94719 -27.66019 -27.00187 -26.36858 -23.27506 -22.92834 -22.02454 -21.64198 -20.13885 -19.76485 -18.51405 -18.26388 -17.70785 -17.56578 -17.03225 -16.85350 -16.77305 -16.50398 -16.14562 -15.84994 -15.63696 -15.29303 -15.03362 -14.68542 -14.56332 -14.34989 -14.07718 -13.76463 -13.53191 -13.51962 -13.12317 -13.04651 -12.88884 -12.81577 -12.57331 -12.39464 -11.70852 -11.63845 -11.37987 -11.13281 -11.04548 -10.90233 -10.81068 -10.56542 -10.21567 -10.03596 -9.86243 -8.62416 -8.32110 -6.09211 0.63357 1.21008 1.31294 1.39377 1.43517 1.51219 1.61072 1.69551 1.79153 2.01644 2.28546 2.34726 3.02626 3.11833 3.26188 3.38627 3.51829 3.61950 3.82714 3.95187 4.04108 4.08505 4.12091 4.21820 4.32444 4.37998 4.41232 4.56413 4.59428 4.60720 4.71869 4.79049 4.85615 5.21732 5.22457 5.44096 5.45495 5.50943 5.85341 6.22980 6.55077 6.60594 6.92707 7.10007 7.10012 7.33972 8.77167 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.001510 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.511871 B =18539.232720 C =19266.824474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.568 6.568 13 N -0.708 5.708 14 C 0.133 3.867 15 C -0.114 4.114 16 C 0.105 3.895 17 N -0.647 5.647 18 C 0.523 3.477 19 O -0.574 6.574 20 C 0.119 3.881 21 N -0.380 5.380 22 C 0.266 3.734 23 N -0.578 5.578 24 C 0.186 3.814 25 N -0.341 5.341 26 C 0.105 3.895 27 H 0.270 0.730 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.420 0.580 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.184 0.816 38 H 0.269 0.731 39 H 0.234 0.766 40 H 0.101 0.899 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.950 -21.105 5.663 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.362 5.362 14 C 0.009 3.991 15 C -0.133 4.133 16 C -0.018 4.018 17 N -0.383 5.383 18 C 0.312 3.688 19 O -0.453 6.453 20 C -0.006 4.006 21 N -0.171 5.171 22 C -0.030 4.030 23 N -0.305 5.305 24 C -0.117 4.117 25 N -0.168 5.168 26 C -0.016 4.016 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.258 0.742 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.201 0.799 38 H 0.285 0.715 39 H 0.250 0.750 40 H 0.120 0.880 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.433 -22.395 5.428 28.303 hybrid contribution 1.402 1.200 -0.273 1.865 sum 17.835 -21.195 5.155 28.176 Atomic orbital electron populations 1.70190 1.07999 1.28457 1.48244 1.26103 0.95902 1.03291 0.93858 0.84929 0.78752 0.76499 0.77917 1.17820 1.20224 1.20114 1.23251 0.95400 0.92006 1.58483 0.89719 1.85628 1.10964 0.99422 1.97051 1.23376 1.03325 0.94377 1.06986 1.20021 0.86207 0.86715 0.75126 1.90714 1.17664 1.86119 1.50186 1.45629 1.10380 1.04696 1.75524 1.21225 0.95799 0.79418 1.02651 1.23091 0.98626 0.92327 0.99299 1.23056 0.92466 0.92651 0.93619 1.49596 1.38214 1.14198 1.36271 1.20662 0.82053 0.81000 0.85081 1.90804 1.70018 1.31339 1.53118 1.21867 0.97299 0.82478 0.98910 1.50166 1.06311 1.06362 1.54246 1.27068 0.85648 0.95951 0.94294 1.70542 1.29290 1.04794 1.25903 1.26487 0.85047 1.02078 0.98061 1.78101 1.23659 0.89882 1.25163 1.23560 1.04368 0.77559 0.96153 0.92102 0.86818 0.87196 0.74241 0.91929 0.91114 0.85018 0.90898 0.88911 0.84282 0.79901 0.71510 0.74994 0.88049 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.64 13.22 21.65 0.29 -54.35 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -29.64 9.50 67.96 0.65 -28.99 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 9 S -0.16 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -4.49 6.16 71.23 0.44 -4.05 16 11 C 0.53 16.56 7.85 87.66 0.69 17.25 16 12 O -0.57 -23.73 15.86 -3.04 -0.05 -23.77 16 13 N -0.71 -11.94 5.56 -463.04 -2.57 -14.51 16 14 C 0.13 1.78 5.59 86.38 0.48 2.26 16 15 C -0.11 -0.66 4.11 -10.37 -0.04 -0.70 16 16 C 0.11 1.10 8.19 83.18 0.68 1.78 16 17 N -0.65 -6.46 3.69 -857.77 -3.16 -9.62 16 18 C 0.52 8.00 8.12 87.66 0.71 8.71 16 19 O -0.57 -15.96 16.53 -3.01 -0.05 -16.01 16 20 C 0.12 0.72 6.86 85.63 0.59 1.31 16 21 N -0.38 -5.39 3.40 -355.80 -1.21 -6.60 16 22 C 0.27 2.89 12.63 180.36 2.28 5.17 16 23 N -0.58 -10.34 11.19 -204.00 -2.28 -12.62 16 24 C 0.19 3.54 13.03 180.76 2.36 5.89 16 25 N -0.34 -7.58 11.83 -61.24 -0.72 -8.30 16 26 C 0.10 0.28 8.00 83.27 0.67 0.94 16 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 29 H 0.11 3.39 8.14 -2.40 -0.02 3.37 16 30 H 0.42 3.73 8.47 -92.71 -0.79 2.94 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.05 7.81 -2.38 -0.02 1.04 16 33 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.97 8.11 -2.38 -0.02 0.95 16 36 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.18 -0.91 8.09 -2.39 -0.02 -0.92 16 38 H 0.27 -0.38 8.06 -2.91 -0.02 -0.40 16 39 H 0.23 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.10 0.26 7.88 -2.39 -0.02 0.24 16 41 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 Total: -1.00 -98.21 377.83 1.34 -96.87 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.28 Total: 3.64 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 9.96 Total: 10.76 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -9.67 Total: -106.01 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.10 Total: -39.79 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -98.21 1.34 -96.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704562383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.159 kcal (2) G-P(sol) polarization free energy of solvation -98.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds