Wall clock time and date at job start Tue Mar 31 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99983 * 2 1 4 4 H 1.48506 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47209 * 299.99373 * 3 2 1 6 6 H 1.48500 * 109.47457 * 59.99421 * 3 2 1 7 7 C 1.38801 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99463 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00007 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47242 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99962 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00076 * 180.02562 * 11 10 9 14 14 C 1.47580 * 134.49594 * 5.02055 * 13 11 10 15 15 C 1.53940 * 86.11960 * 204.63891 * 14 13 11 16 16 C 1.47589 * 134.49243 * 185.02064 * 13 11 10 17 17 H 1.09000 * 113.76902 * 269.66216 * 16 13 11 18 18 C 1.53002 * 113.87015 * 41.04683 * 16 13 11 19 19 N 1.46505 * 109.46917 * 278.99496 * 18 16 13 20 20 C 1.34771 * 119.99723 * 184.81130 * 19 18 16 21 21 O 1.21282 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99876 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.47145 * 179.97438 * 22 20 19 24 24 N 1.33238 * 125.53082 * 89.99908 * 23 22 20 25 25 C 1.30835 * 109.83014 * 180.02562 * 24 23 22 26 26 N 1.34416 * 108.07875 * 359.97438 * 25 24 23 27 27 H 0.97003 * 126.82718 * 180.02562 * 26 25 24 28 28 N 1.30718 * 125.52731 * 269.69006 * 23 22 20 29 29 H 0.97002 * 119.99969 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47234 * 59.99934 * 10 9 7 31 31 H 1.09005 * 109.47634 * 300.00014 * 10 9 7 32 32 H 1.09007 * 113.76839 * 90.33823 * 14 13 11 33 33 H 1.08996 * 113.86904 * 318.95834 * 14 13 11 34 34 H 1.09002 * 113.74755 * 222.04505 * 15 14 13 35 35 H 1.08999 * 113.74235 * 90.73684 * 15 14 13 36 36 H 1.08994 * 109.46943 * 38.98884 * 18 16 13 37 37 H 1.08996 * 109.47152 * 158.99508 * 18 16 13 38 38 H 0.96997 * 120.00260 * 4.80172 * 19 18 16 39 39 H 1.09007 * 109.46982 * 299.99298 * 22 20 19 40 40 H 1.08997 * 109.47299 * 59.99475 * 22 20 19 41 41 H 1.07999 * 125.95517 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0018 14 6 4.3110 -6.4749 0.0942 15 6 4.1314 -7.8186 -0.6351 16 6 2.6919 -7.8083 -0.0896 17 1 2.5849 -8.3000 0.8772 18 6 1.6431 -8.2595 -1.1082 19 7 0.3085 -8.1583 -0.5123 20 6 -0.7686 -8.5959 -1.1939 21 8 -0.6332 -9.0730 -2.3007 22 6 -2.1414 -8.4923 -0.5809 23 6 -3.1631 -9.0462 -1.5402 24 7 -3.5664 -10.3150 -1.5944 25 6 -4.4596 -10.4567 -2.5398 26 7 -4.6483 -9.2583 -3.1185 27 1 -5.2522 -9.0543 -3.8497 28 7 -3.8016 -8.3588 -2.4503 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7314 0.8906 31 1 3.1244 -3.7314 -0.8895 32 1 4.6797 -6.5750 1.1151 33 1 4.8580 -5.7306 -0.4844 34 1 4.7476 -8.6224 -0.2323 35 1 4.1898 -7.7399 -1.7207 36 1 1.6962 -7.6223 -1.9908 37 1 1.8358 -9.2935 -1.3943 38 1 0.2002 -7.7764 0.3727 39 1 -2.1684 -9.0620 0.3481 40 1 -2.3684 -7.4467 -0.3726 41 1 -4.9583 -11.3763 -2.8082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705246155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:07 Heat of formation + Delta-G solvation = 53.637305 kcal Electronic energy + Delta-G solvation = -26109.982442 eV Core-core repulsion = 22154.611072 eV Total energy + Delta-G solvation = -3955.371370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.20990 -40.45824 -39.20401 -37.42276 -34.53146 -33.40234 -32.43997 -31.81297 -30.81578 -29.69651 -28.11563 -27.82538 -25.48713 -23.58308 -22.89463 -22.00313 -21.21649 -20.02292 -18.91665 -18.47076 -17.75462 -17.23267 -16.62919 -16.32953 -15.84297 -15.60723 -15.33098 -15.01184 -14.82089 -14.78199 -14.26595 -13.98652 -13.63642 -13.43161 -13.23195 -12.90537 -12.53667 -12.44592 -12.32367 -12.21881 -11.93845 -11.87400 -11.58056 -11.18219 -11.08091 -11.01652 -10.76469 -10.31560 -10.17016 -9.98268 -9.82025 -9.62256 -9.32288 -9.08510 -8.95356 -8.64384 -8.24636 -6.51016 -6.22947 -3.93331 1.50336 2.50616 2.62103 2.71765 2.78181 3.02618 3.20606 3.22572 3.29501 3.36950 3.55701 3.96621 4.18798 4.20157 4.51913 4.58765 4.68063 4.75324 4.83073 4.94292 5.06969 5.12426 5.15369 5.30648 5.34788 5.37415 5.46552 5.50822 5.59703 5.71000 5.85289 5.95539 6.08142 6.11791 6.14956 6.25457 6.49808 6.88506 7.58702 7.59312 7.79174 7.95019 8.31610 8.34183 8.53092 9.22567 10.84460 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.002773 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.510279 B =10094.483220 C =12427.680997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.145 4.145 11 C 0.555 3.445 12 O -0.509 6.509 13 N -0.649 5.649 14 C 0.102 3.898 15 C -0.142 4.142 16 C 0.121 3.879 17 H 0.098 0.902 18 C 0.124 3.876 19 N -0.712 5.712 20 C 0.528 3.472 21 O -0.543 6.543 22 C -0.051 4.051 23 C 0.251 3.749 24 N -0.537 5.537 25 C 0.258 3.742 26 N -0.484 5.484 27 H 0.441 0.559 28 N -0.297 5.297 29 H 0.268 0.732 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.408 0.592 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -22.474 -0.864 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.296 4.296 11 C 0.345 3.655 12 O -0.383 6.383 13 N -0.389 5.389 14 C -0.021 4.021 15 C -0.181 4.181 16 C 0.017 3.983 17 H 0.115 0.885 18 C -0.001 4.001 19 N -0.364 5.364 20 C 0.313 3.687 21 O -0.420 6.420 22 C -0.093 4.093 23 C -0.032 4.032 24 N -0.265 5.265 25 C -0.041 4.041 26 N -0.202 5.202 27 H 0.287 0.713 28 N -0.126 5.126 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.244 0.756 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.509 -22.304 -1.517 22.361 hybrid contribution 1.410 1.515 -0.154 2.075 sum 0.901 -20.789 -1.670 20.875 Atomic orbital electron populations 1.70028 1.05930 1.27349 1.46906 1.24995 0.95034 0.99034 0.94550 0.86119 0.79574 0.81895 0.77914 1.19634 1.20557 1.20555 1.22893 0.94898 0.91629 1.58864 0.90948 1.85371 1.04825 0.96313 1.96698 1.23467 1.06494 0.94951 1.04659 1.20048 0.85614 0.85197 0.74632 1.90662 1.14719 1.84827 1.48098 1.50293 1.07897 1.05199 1.75547 1.23080 0.81818 0.96578 1.00590 1.23550 0.94690 0.97874 1.01961 1.23037 0.94980 0.81629 0.98652 0.88473 1.21454 0.81017 1.01576 0.96021 1.45728 1.05959 1.63136 1.21597 1.20050 0.85698 0.77431 0.85533 1.90700 1.86418 1.45208 1.19715 1.19887 0.88442 1.04367 0.96610 1.23314 0.96722 0.87834 0.95338 1.70332 1.14854 1.19171 1.22124 1.26021 0.95460 0.91801 0.90823 1.48096 1.34499 1.07090 1.30557 0.71347 1.78096 1.08526 1.15304 1.10703 0.92234 0.89529 0.89492 0.89691 0.89769 0.89430 0.88556 0.91134 0.90165 0.75579 0.86141 0.85777 0.76214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.92 5.91 36.01 0.21 -2.71 16 11 C 0.56 10.04 7.95 -10.99 -0.09 9.95 16 12 O -0.51 -10.61 14.22 5.55 0.08 -10.53 16 13 N -0.65 -8.36 3.49 -171.19 -0.60 -8.96 16 14 C 0.10 0.88 8.61 -2.98 -0.03 0.86 16 15 C -0.14 -0.98 7.86 -25.81 -0.20 -1.19 16 16 C 0.12 1.17 4.27 -66.86 -0.29 0.89 16 17 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 18 C 0.12 1.49 5.33 -4.04 -0.02 1.47 16 19 N -0.71 -9.49 4.55 -60.29 -0.27 -9.77 16 20 C 0.53 8.06 7.82 -10.99 -0.09 7.98 16 21 O -0.54 -10.24 16.03 5.56 0.09 -10.15 16 22 C -0.05 -0.66 6.33 -29.04 -0.18 -0.84 16 23 C 0.25 3.70 6.63 -156.85 -1.04 2.65 16 24 N -0.54 -7.12 11.19 -11.98 -0.13 -7.26 16 25 C 0.26 2.36 13.13 -90.66 -1.19 1.17 16 26 N -0.48 -4.84 7.45 29.53 0.22 -4.62 16 27 H 0.44 2.61 8.96 -182.33 -1.63 0.98 16 28 N -0.30 -4.48 12.80 32.42 0.41 -4.06 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.41 5.15 7.44 -40.82 -0.30 4.85 16 39 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.22 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -41.29 373.32 -10.34 -51.63 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.55 Total: 3.55 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.71 Total: 7.31 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.36 Total: -60.06 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.17 Total: -20.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.29 -10.34 -51.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705246155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.272 kcal (2) G-P(sol) polarization free energy of solvation -41.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds