Wall clock time and date at job start Tue Mar 31 2020 22:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99983 * 2 1 4 4 H 1.48506 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47209 * 299.99373 * 3 2 1 6 6 H 1.48500 * 109.47457 * 59.99421 * 3 2 1 7 7 C 1.38801 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99463 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00007 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47242 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99962 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00076 * 180.02562 * 11 10 9 14 14 C 1.47580 * 134.49594 * 5.02055 * 13 11 10 15 15 C 1.53940 * 86.11960 * 204.63891 * 14 13 11 16 16 C 1.47589 * 134.49243 * 185.02064 * 13 11 10 17 17 H 1.09000 * 113.76902 * 269.66216 * 16 13 11 18 18 C 1.53002 * 113.87015 * 41.04683 * 16 13 11 19 19 N 1.46505 * 109.46917 * 278.99496 * 18 16 13 20 20 C 1.34771 * 119.99723 * 184.81130 * 19 18 16 21 21 O 1.21282 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99876 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.47145 * 179.97438 * 22 20 19 24 24 N 1.33238 * 125.53082 * 89.99908 * 23 22 20 25 25 C 1.30835 * 109.83014 * 180.02562 * 24 23 22 26 26 N 1.34416 * 108.07875 * 359.97438 * 25 24 23 27 27 H 0.97003 * 126.82718 * 180.02562 * 26 25 24 28 28 N 1.30718 * 125.52731 * 269.69006 * 23 22 20 29 29 H 0.97002 * 119.99969 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47234 * 59.99934 * 10 9 7 31 31 H 1.09005 * 109.47634 * 300.00014 * 10 9 7 32 32 H 1.09007 * 113.76839 * 90.33823 * 14 13 11 33 33 H 1.08996 * 113.86904 * 318.95834 * 14 13 11 34 34 H 1.09002 * 113.74755 * 222.04505 * 15 14 13 35 35 H 1.08999 * 113.74235 * 90.73684 * 15 14 13 36 36 H 1.08994 * 109.46943 * 38.98884 * 18 16 13 37 37 H 1.08996 * 109.47152 * 158.99508 * 18 16 13 38 38 H 0.96997 * 120.00260 * 4.80172 * 19 18 16 39 39 H 1.09007 * 109.46982 * 299.99298 * 22 20 19 40 40 H 1.08997 * 109.47299 * 59.99475 * 22 20 19 41 41 H 1.07999 * 125.95517 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0018 14 6 4.3110 -6.4749 0.0942 15 6 4.1314 -7.8186 -0.6351 16 6 2.6919 -7.8083 -0.0896 17 1 2.5849 -8.3000 0.8772 18 6 1.6431 -8.2595 -1.1082 19 7 0.3085 -8.1583 -0.5123 20 6 -0.7686 -8.5959 -1.1939 21 8 -0.6332 -9.0730 -2.3007 22 6 -2.1414 -8.4923 -0.5809 23 6 -3.1631 -9.0462 -1.5402 24 7 -3.5664 -10.3150 -1.5944 25 6 -4.4596 -10.4567 -2.5398 26 7 -4.6483 -9.2583 -3.1185 27 1 -5.2522 -9.0543 -3.8497 28 7 -3.8016 -8.3588 -2.4503 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7314 0.8906 31 1 3.1244 -3.7314 -0.8895 32 1 4.6797 -6.5750 1.1151 33 1 4.8580 -5.7306 -0.4844 34 1 4.7476 -8.6224 -0.2323 35 1 4.1898 -7.7399 -1.7207 36 1 1.6962 -7.6223 -1.9908 37 1 1.8358 -9.2935 -1.3943 38 1 0.2002 -7.7764 0.3727 39 1 -2.1684 -9.0620 0.3481 40 1 -2.3684 -7.4467 -0.3726 41 1 -4.9583 -11.3763 -2.8082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705246155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:06 Heat of formation + Delta-G solvation = 21.781047 kcal Electronic energy + Delta-G solvation = -26111.363833 eV Core-core repulsion = 22154.611072 eV Total energy + Delta-G solvation = -3956.752761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.10143 -41.47853 -40.38605 -38.67618 -35.65470 -34.60186 -34.35308 -32.74869 -32.10841 -30.72573 -29.37204 -28.75943 -27.65504 -24.44739 -23.71196 -22.98655 -22.23828 -21.08430 -20.20838 -19.47658 -19.27321 -18.38819 -17.82577 -17.39873 -17.02394 -16.89296 -16.60858 -16.47755 -16.15461 -15.92052 -15.63268 -15.34514 -14.70379 -14.59320 -14.52059 -14.31853 -13.72130 -13.59802 -13.27295 -13.16141 -13.12260 -13.08231 -12.94660 -12.92287 -12.59570 -12.30853 -11.99855 -11.71908 -11.29957 -11.17400 -11.11793 -11.01097 -10.72664 -10.62633 -10.28152 -10.09002 -9.67816 -8.67104 -8.36438 -6.13870 0.63690 1.22551 1.39516 1.42388 1.53783 1.57168 1.64818 1.71599 1.84134 1.99252 2.26050 2.40169 2.97653 3.13826 3.23627 3.47664 3.65080 3.70870 3.78001 3.86992 4.05773 4.14872 4.23365 4.27537 4.40168 4.43144 4.47435 4.50916 4.51804 4.72962 4.77462 5.02862 5.07920 5.22430 5.29465 5.35390 5.39883 5.43467 6.17985 6.25788 6.47969 6.65557 7.04947 7.06649 7.14861 7.23548 8.72833 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.002773 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.510279 B =10094.483220 C =12427.680997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.080 0.920 9 S -0.146 6.146 10 C -0.120 4.120 11 C 0.550 3.450 12 O -0.550 6.550 13 N -0.649 5.649 14 C 0.097 3.903 15 C -0.121 4.121 16 C 0.122 3.878 17 H 0.126 0.874 18 C 0.122 3.878 19 N -0.704 5.704 20 C 0.524 3.476 21 O -0.585 6.585 22 C -0.049 4.049 23 C 0.236 3.764 24 N -0.570 5.570 25 C 0.276 3.724 26 N -0.476 5.476 27 H 0.457 0.543 28 N -0.350 5.350 29 H 0.271 0.729 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.412 0.588 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -24.053 -0.304 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.694 4.694 8 H 0.098 0.902 9 S 0.081 5.919 10 C -0.271 4.271 11 C 0.338 3.662 12 O -0.428 6.428 13 N -0.388 5.388 14 C -0.024 4.024 15 C -0.159 4.159 16 C 0.019 3.981 17 H 0.144 0.856 18 C -0.003 4.003 19 N -0.356 5.356 20 C 0.310 3.690 21 O -0.466 6.466 22 C -0.091 4.091 23 C -0.048 4.048 24 N -0.299 5.299 25 C -0.022 4.022 26 N -0.196 5.196 27 H 0.306 0.694 28 N -0.180 5.180 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.249 0.751 39 H 0.167 0.833 40 H 0.137 0.863 41 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 1.838 -23.914 -0.952 24.003 hybrid contribution 0.728 1.824 -0.374 1.999 sum 2.567 -22.090 -1.327 22.278 Atomic orbital electron populations 1.70190 1.07934 1.28524 1.48048 1.26129 0.95982 1.03313 0.93777 0.84913 0.78603 0.76362 0.78115 1.18053 1.20033 1.19746 1.23217 0.95229 0.92144 1.58765 0.90199 1.85510 1.10347 0.99025 1.96977 1.23265 1.03334 0.94818 1.05696 1.19663 0.85663 0.85535 0.75294 1.90643 1.16407 1.85339 1.50386 1.50377 1.09626 1.05567 1.73182 1.23507 0.78755 0.97519 1.02636 1.23507 0.92529 0.98059 1.01805 1.23419 0.95937 0.79203 0.99520 0.85646 1.21555 0.81171 1.01829 0.95716 1.45777 1.06266 1.62027 1.21508 1.20436 0.86769 0.76762 0.85059 1.90660 1.87101 1.47379 1.21436 1.19939 0.87106 1.04533 0.97551 1.23540 0.97026 0.88627 0.95565 1.70316 1.16701 1.18666 1.24226 1.27104 0.93591 0.92810 0.88675 1.48010 1.34022 1.06836 1.30703 0.69416 1.77968 1.10352 1.17702 1.11994 0.92011 0.87968 0.88677 0.86936 0.89449 0.85282 0.88844 0.94450 0.88626 0.75126 0.83279 0.86329 0.70621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 10 C -0.12 -4.85 5.91 71.24 0.42 -4.42 16 11 C 0.55 19.92 7.95 87.66 0.70 20.62 16 12 O -0.55 -23.74 14.22 -3.04 -0.04 -23.79 16 13 N -0.65 -15.56 3.49 -813.92 -2.84 -18.41 16 14 C 0.10 1.31 8.61 86.48 0.74 2.06 16 15 C -0.12 -1.18 7.86 31.25 0.25 -0.93 16 16 C 0.12 2.04 4.27 45.09 0.19 2.24 16 17 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 18 C 0.12 2.87 5.33 86.38 0.46 3.33 16 19 N -0.70 -19.09 4.55 -463.06 -2.11 -21.20 16 20 C 0.52 16.63 7.82 87.66 0.69 17.31 16 21 O -0.58 -22.96 16.03 -3.03 -0.05 -23.01 16 22 C -0.05 -1.35 6.33 29.10 0.18 -1.16 16 23 C 0.24 7.15 6.63 138.63 0.92 8.07 16 24 N -0.57 -14.90 11.19 -191.81 -2.15 -17.05 16 25 C 0.28 4.60 13.13 180.36 2.37 6.97 16 26 N -0.48 -9.30 7.45 -60.50 -0.45 -9.75 16 27 H 0.46 5.09 8.96 -213.09 -1.91 3.18 16 28 N -0.35 -10.94 12.80 -51.33 -0.66 -11.60 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.09 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.41 10.53 7.44 -92.71 -0.69 9.84 16 39 H 0.15 2.99 8.14 -2.38 -0.02 2.97 16 40 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.28 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -96.42 373.32 -0.62 -97.04 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -1.51 Total: 22.71 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 8.03 Total: 24.43 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -7.92 Total: -134.11 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.09 Total: -46.80 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -96.42 -0.62 -97.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705246155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.826 kcal (2) G-P(sol) polarization free energy of solvation -96.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds