Wall clock time and date at job start Tue Mar 31 2020 22:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47378 * 239.99956 * 3 2 1 5 5 H 1.48500 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46955 * 119.99787 * 3 2 1 7 7 C 1.38801 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00290 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99916 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47232 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99674 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99898 * 179.97438 * 11 10 9 14 14 C 1.47065 * 136.06176 * 5.04018 * 13 11 10 15 15 C 1.53604 * 88.01059 * 152.88778 * 14 13 11 16 16 C 1.47067 * 136.05612 * 184.97698 * 13 11 10 17 17 H 1.08997 * 113.46439 * 92.31869 * 16 13 11 18 18 C 1.53007 * 113.47014 * 321.93861 * 16 13 11 19 19 N 1.46492 * 109.47197 * 175.90043 * 18 16 13 20 20 C 1.34782 * 120.00236 * 175.02458 * 19 18 16 21 21 O 1.21283 * 119.99395 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.00260 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.46817 * 180.02562 * 22 20 19 24 24 N 1.33237 * 125.52770 * 90.00454 * 23 22 20 25 25 C 1.30832 * 109.82821 * 179.97438 * 24 23 22 26 26 N 1.34420 * 108.08242 * 359.97438 * 25 24 23 27 27 H 0.96998 * 126.82762 * 179.97438 * 26 25 24 28 28 N 1.30714 * 125.52794 * 269.97356 * 23 22 20 29 29 H 0.97001 * 120.00052 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47506 * 59.99360 * 10 9 7 31 31 H 1.09003 * 109.46907 * 299.99709 * 10 9 7 32 32 H 1.09002 * 113.46006 * 267.62138 * 14 13 11 33 33 H 1.08997 * 113.46684 * 37.99159 * 14 13 11 34 34 H 1.09003 * 114.20893 * 272.44978 * 15 14 13 35 35 H 1.09002 * 114.24317 * 139.58941 * 15 14 13 36 36 H 1.09006 * 109.46688 * 55.90320 * 18 16 13 37 37 H 1.08997 * 109.47034 * 295.90313 * 18 16 13 38 38 H 0.97004 * 120.00426 * 355.02737 * 19 18 16 39 39 H 1.09000 * 109.46757 * 60.00598 * 22 20 19 40 40 H 1.08997 * 109.47185 * 300.00612 * 22 20 19 41 41 H 1.08007 * 125.95887 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5022 0.0000 13 7 2.8441 -6.3430 -0.0007 14 6 4.3020 -6.5143 0.0886 15 6 4.0480 -7.9025 0.6952 16 6 2.7325 -7.8067 -0.0900 17 1 2.8065 -8.1863 -1.1090 18 6 1.5290 -8.3733 0.6662 19 7 1.4460 -9.8182 0.4395 20 6 0.5195 -10.5502 1.0894 21 8 -0.2458 -10.0125 1.8615 22 6 0.4337 -12.0365 0.8558 23 6 -0.6764 -12.6137 1.6958 24 7 -1.9473 -12.7425 1.3168 25 6 -2.6463 -13.2801 2.2832 26 7 -1.8196 -13.5102 3.3179 27 1 -2.0544 -13.9016 4.1738 28 7 -0.5486 -13.0697 2.9141 29 1 -0.4850 0.8401 -0.0004 30 1 3.1245 -3.7313 0.8904 31 1 3.1244 -3.7313 -0.8895 32 1 4.7952 -6.5497 -0.8828 33 1 4.7794 -5.8182 0.7783 34 1 3.9233 -7.9011 1.7781 35 1 4.7260 -8.6778 0.3383 36 1 0.6170 -7.8962 0.3072 37 1 1.6454 -8.1789 1.7323 38 1 2.0578 -10.2483 -0.1783 39 1 1.3792 -12.5029 1.1325 40 1 0.2288 -12.2275 -0.1976 41 1 -3.7032 -13.5007 2.2547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705246156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:09 Heat of formation + Delta-G solvation = 58.831441 kcal Electronic energy + Delta-G solvation = -25424.961430 eV Core-core repulsion = 21469.815295 eV Total energy + Delta-G solvation = -3955.146135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.42508 -40.60502 -39.50076 -37.51609 -34.81703 -33.65106 -32.42117 -32.03930 -30.85155 -29.86865 -28.25203 -27.80888 -25.46393 -23.55906 -23.07037 -22.16367 -21.50066 -20.36992 -18.96297 -18.65583 -17.77109 -17.40855 -16.71421 -16.40726 -15.97535 -15.66695 -15.32360 -15.13177 -15.02372 -14.79438 -14.29144 -13.97214 -13.82236 -13.68994 -13.61085 -12.96642 -12.65913 -12.54352 -12.49466 -12.40365 -12.03850 -11.87233 -11.64306 -11.04665 -11.03053 -10.84247 -10.76092 -10.53214 -10.37467 -10.20260 -9.87446 -9.82260 -9.43896 -9.12706 -9.05098 -8.65540 -8.22956 -6.49415 -6.20231 -3.91297 1.27500 2.27771 2.41004 2.47965 2.65981 3.02134 3.17121 3.24274 3.28048 3.30706 3.58177 3.74718 4.07478 4.21174 4.25634 4.50754 4.57061 4.64095 4.72380 4.81446 4.94907 4.96423 5.12675 5.14565 5.17024 5.32505 5.46557 5.52985 5.67362 5.82194 5.84518 5.85974 5.97461 6.01886 6.07793 6.14323 6.29047 6.68008 7.25320 7.60107 7.73790 7.82580 8.04731 8.35976 8.53317 9.24533 10.87115 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.001905 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.490420 B =14695.774851 C =15790.128261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.508 6.508 13 N -0.647 5.647 14 C 0.101 3.899 15 C -0.152 4.152 16 C 0.124 3.876 17 H 0.096 0.904 18 C 0.113 3.887 19 N -0.726 5.726 20 C 0.519 3.481 21 O -0.523 6.523 22 C -0.047 4.047 23 C 0.247 3.753 24 N -0.534 5.534 25 C 0.264 3.736 26 N -0.483 5.483 27 H 0.442 0.558 28 N -0.305 5.305 29 H 0.269 0.731 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -30.169 1.761 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.295 4.295 11 C 0.351 3.649 12 O -0.381 6.381 13 N -0.387 5.387 14 C -0.022 4.022 15 C -0.189 4.189 16 C 0.019 3.981 17 H 0.113 0.887 18 C -0.010 4.010 19 N -0.379 5.379 20 C 0.303 3.697 21 O -0.397 6.397 22 C -0.090 4.090 23 C -0.036 4.036 24 N -0.262 5.262 25 C -0.035 4.035 26 N -0.201 5.201 27 H 0.287 0.713 28 N -0.134 5.134 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.234 0.766 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.500 -29.604 2.356 30.037 hybrid contribution 1.817 0.865 0.219 2.024 sum 6.317 -28.739 2.575 29.538 Atomic orbital electron populations 1.70006 1.05953 1.27589 1.46662 1.24996 0.95035 0.99024 0.94531 0.86218 0.79228 0.81225 0.78781 1.19938 1.20795 1.19938 1.22814 0.94854 0.91612 1.59171 0.90977 1.85446 1.04768 0.96288 1.96721 1.23476 1.06540 0.94620 1.04833 1.20006 0.85378 0.84893 0.74667 1.90734 1.14709 1.84773 1.47847 1.49738 1.08126 1.05075 1.75776 1.22906 0.82333 0.96122 1.00869 1.23611 0.96582 0.97536 1.01219 1.22761 0.94400 0.81755 0.99170 0.88655 1.21613 0.99496 0.79050 1.00890 1.45738 1.36580 1.08749 1.46831 1.20155 0.80520 0.88325 0.80673 1.90793 1.40688 1.72886 1.35366 1.19870 0.95921 0.92478 1.00699 1.23275 0.92590 0.97210 0.90552 1.70364 1.03429 1.21582 1.30792 1.26092 0.99099 0.94824 0.83466 1.48069 1.06460 1.48997 1.16596 0.71252 1.77954 1.00386 1.20889 1.14169 0.92100 0.89338 0.89292 0.89748 0.90033 0.88475 0.89175 0.89393 0.90585 0.76617 0.86353 0.85840 0.76006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.51 13.22 55.49 0.73 -25.77 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.14 -3.01 5.99 36.00 0.22 -2.80 16 11 C 0.56 10.97 8.02 -10.99 -0.09 10.89 16 12 O -0.51 -12.01 15.24 5.55 0.08 -11.92 16 13 N -0.65 -9.00 3.57 -177.27 -0.63 -9.64 16 14 C 0.10 0.90 8.42 -8.46 -0.07 0.83 16 15 C -0.15 -1.06 8.02 -26.16 -0.21 -1.27 16 16 C 0.12 1.25 4.08 -72.40 -0.30 0.95 16 17 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 18 C 0.11 1.43 5.39 -4.04 -0.02 1.41 16 19 N -0.73 -6.61 5.55 -60.29 -0.33 -6.94 16 20 C 0.52 6.12 7.82 -10.98 -0.09 6.03 16 21 O -0.52 -9.16 16.03 5.56 0.09 -9.07 16 22 C -0.05 -0.38 6.33 -29.04 -0.18 -0.57 16 23 C 0.25 2.81 6.63 -156.86 -1.04 1.77 16 24 N -0.53 -6.08 11.19 -11.98 -0.13 -6.21 16 25 C 0.26 1.95 13.13 -90.66 -1.19 0.76 16 26 N -0.48 -3.59 7.45 29.53 0.22 -3.37 16 27 H 0.44 1.52 8.96 -182.34 -1.63 -0.12 16 28 N -0.30 -3.43 12.80 32.42 0.41 -3.01 16 29 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.75 7.95 -51.93 -0.41 0.34 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 1.50 7.05 -51.93 -0.37 1.14 16 37 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 38 H 0.40 1.90 8.48 -40.82 -0.35 1.55 16 39 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.22 0.47 8.06 -52.48 -0.42 0.05 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -43.85 374.95 -10.43 -54.28 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.52 Total: -1.58 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.77 Total: 4.85 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.27 Total: -54.94 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.17 Total: -21.00 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -43.85 -10.43 -54.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705246156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.113 kcal (2) G-P(sol) polarization free energy of solvation -43.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds