Wall clock time and date at job start Tue Mar 31 2020 22:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47378 * 239.99956 * 3 2 1 5 5 H 1.48500 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46955 * 119.99787 * 3 2 1 7 7 C 1.38801 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00290 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99916 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47232 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99674 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99898 * 179.97438 * 11 10 9 14 14 C 1.47065 * 136.06176 * 5.04018 * 13 11 10 15 15 C 1.53604 * 88.01059 * 152.88778 * 14 13 11 16 16 C 1.47067 * 136.05612 * 184.97698 * 13 11 10 17 17 H 1.08997 * 113.46439 * 92.31869 * 16 13 11 18 18 C 1.53007 * 113.47014 * 321.93861 * 16 13 11 19 19 N 1.46492 * 109.47197 * 175.90043 * 18 16 13 20 20 C 1.34782 * 120.00236 * 175.02458 * 19 18 16 21 21 O 1.21283 * 119.99395 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.00260 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.46817 * 180.02562 * 22 20 19 24 24 N 1.33237 * 125.52770 * 90.00454 * 23 22 20 25 25 C 1.30832 * 109.82821 * 179.97438 * 24 23 22 26 26 N 1.34420 * 108.08242 * 359.97438 * 25 24 23 27 27 H 0.96998 * 126.82762 * 179.97438 * 26 25 24 28 28 N 1.30714 * 125.52794 * 269.97356 * 23 22 20 29 29 H 0.97001 * 120.00052 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47506 * 59.99360 * 10 9 7 31 31 H 1.09003 * 109.46907 * 299.99709 * 10 9 7 32 32 H 1.09002 * 113.46006 * 267.62138 * 14 13 11 33 33 H 1.08997 * 113.46684 * 37.99159 * 14 13 11 34 34 H 1.09003 * 114.20893 * 272.44978 * 15 14 13 35 35 H 1.09002 * 114.24317 * 139.58941 * 15 14 13 36 36 H 1.09006 * 109.46688 * 55.90320 * 18 16 13 37 37 H 1.08997 * 109.47034 * 295.90313 * 18 16 13 38 38 H 0.97004 * 120.00426 * 355.02737 * 19 18 16 39 39 H 1.09000 * 109.46757 * 60.00598 * 22 20 19 40 40 H 1.08997 * 109.47185 * 300.00612 * 22 20 19 41 41 H 1.08007 * 125.95887 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5022 0.0000 13 7 2.8441 -6.3430 -0.0007 14 6 4.3020 -6.5143 0.0886 15 6 4.0480 -7.9025 0.6952 16 6 2.7325 -7.8067 -0.0900 17 1 2.8065 -8.1863 -1.1090 18 6 1.5290 -8.3733 0.6662 19 7 1.4460 -9.8182 0.4395 20 6 0.5195 -10.5502 1.0894 21 8 -0.2458 -10.0125 1.8615 22 6 0.4337 -12.0365 0.8558 23 6 -0.6764 -12.6137 1.6958 24 7 -1.9473 -12.7425 1.3168 25 6 -2.6463 -13.2801 2.2832 26 7 -1.8196 -13.5102 3.3179 27 1 -2.0544 -13.9016 4.1738 28 7 -0.5486 -13.0697 2.9141 29 1 -0.4850 0.8401 -0.0004 30 1 3.1245 -3.7313 0.8904 31 1 3.1244 -3.7313 -0.8895 32 1 4.7952 -6.5497 -0.8828 33 1 4.7794 -5.8182 0.7783 34 1 3.9233 -7.9011 1.7781 35 1 4.7260 -8.6778 0.3383 36 1 0.6170 -7.8962 0.3072 37 1 1.6454 -8.1789 1.7323 38 1 2.0578 -10.2483 -0.1783 39 1 1.3792 -12.5029 1.1325 40 1 0.2288 -12.2275 -0.1976 41 1 -3.7032 -13.5007 2.2547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705246156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:09 Heat of formation + Delta-G solvation = 22.868851 kcal Electronic energy + Delta-G solvation = -25426.520885 eV Core-core repulsion = 21469.815295 eV Total energy + Delta-G solvation = -3956.705590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.08308 -41.63143 -40.51576 -38.89596 -35.81974 -34.61170 -34.34199 -32.75203 -32.19800 -30.72594 -29.45577 -28.72826 -27.66231 -24.36688 -23.72436 -23.18239 -22.37113 -21.18491 -20.25440 -19.50609 -19.27216 -18.38819 -17.91602 -17.46927 -16.92169 -16.87786 -16.65338 -16.46762 -16.13680 -15.92508 -15.74331 -15.37503 -14.87972 -14.58368 -14.55420 -14.34864 -13.91421 -13.82102 -13.40271 -13.20160 -13.18009 -13.07931 -12.88105 -12.81853 -12.65302 -12.40776 -11.77635 -11.69858 -11.33192 -11.14883 -11.10435 -11.01740 -10.86534 -10.63989 -10.31535 -10.17079 -9.77617 -8.71439 -8.36334 -6.16158 0.62572 1.17249 1.39879 1.43017 1.52033 1.55266 1.57337 1.66126 1.83821 1.94617 2.25604 2.43088 2.97448 3.16335 3.19498 3.35708 3.66399 3.68123 3.73840 3.88227 4.02513 4.04954 4.17183 4.23410 4.42672 4.45506 4.49421 4.57627 4.61521 4.70764 4.76140 5.01038 5.02556 5.21708 5.26697 5.35420 5.38615 5.39497 6.17284 6.24415 6.50407 6.62000 7.03963 7.08422 7.10494 7.23883 8.72839 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.001905 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.490420 B =14695.774851 C =15790.128261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.157 6.157 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.566 6.566 13 N -0.652 5.652 14 C 0.094 3.906 15 C -0.124 4.124 16 C 0.122 3.878 17 H 0.131 0.869 18 C 0.123 3.877 19 N -0.701 5.701 20 C 0.516 3.484 21 O -0.590 6.590 22 C -0.039 4.039 23 C 0.227 3.773 24 N -0.578 5.578 25 C 0.272 3.728 26 N -0.476 5.476 27 H 0.457 0.543 28 N -0.338 5.338 29 H 0.271 0.729 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.034 0.966 37 H 0.050 0.950 38 H 0.426 0.574 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.260 -31.980 0.968 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.267 4.267 11 C 0.344 3.656 12 O -0.445 6.445 13 N -0.389 5.389 14 C -0.026 4.026 15 C -0.162 4.162 16 C 0.018 3.982 17 H 0.148 0.852 18 C -0.003 4.003 19 N -0.356 5.356 20 C 0.302 3.698 21 O -0.470 6.470 22 C -0.081 4.081 23 C -0.056 4.056 24 N -0.307 5.307 25 C -0.026 4.026 26 N -0.195 5.195 27 H 0.306 0.694 28 N -0.169 5.169 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.265 0.735 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 8.231 -31.506 1.550 32.600 hybrid contribution 0.703 1.231 0.502 1.504 sum 8.934 -30.275 2.052 31.632 Atomic orbital electron populations 1.70189 1.08089 1.28740 1.47835 1.26196 0.96007 1.03498 0.93639 0.84959 0.77764 0.75381 0.79596 1.18399 1.20368 1.18599 1.23154 0.95322 0.91774 1.59159 0.89805 1.85670 1.10727 0.99493 1.97051 1.23257 1.03274 0.93913 1.06297 1.19708 0.85205 0.85635 0.75020 1.90713 1.17208 1.85595 1.50972 1.49814 1.10323 1.05696 1.73071 1.23392 0.79002 0.97199 1.03052 1.23567 0.94543 0.97696 1.00373 1.23218 0.94666 0.78918 1.01353 0.85156 1.21269 0.98614 0.80831 0.99583 1.45461 1.36387 1.07144 1.46558 1.20910 0.79530 0.89932 0.79445 1.90765 1.43339 1.74414 1.38437 1.20022 0.96957 0.89206 1.01914 1.23827 0.93435 0.97382 0.90968 1.70355 1.04043 1.23479 1.32830 1.26982 1.00536 0.92722 0.82348 1.48023 1.05545 1.48521 1.17427 0.69386 1.77834 1.02537 1.21996 1.14503 0.91958 0.87863 0.87413 0.86434 0.89631 0.89351 0.83973 0.94718 0.93117 0.73501 0.82756 0.83153 0.71481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.53 13.22 21.65 0.29 -57.25 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.55 -32.03 9.50 67.95 0.65 -31.39 16 8 H 0.08 4.53 7.80 -2.91 -0.02 4.50 16 9 S -0.16 -9.11 20.57 -56.49 -1.16 -10.27 16 10 C -0.12 -4.91 5.99 71.24 0.43 -4.48 16 11 C 0.56 22.26 8.02 87.66 0.70 22.96 16 12 O -0.57 -28.67 15.24 -3.04 -0.05 -28.72 16 13 N -0.65 -17.24 3.57 -833.14 -2.97 -20.21 16 14 C 0.09 1.30 8.42 83.21 0.70 2.00 16 15 C -0.12 -1.17 8.02 30.97 0.25 -0.92 16 16 C 0.12 2.15 4.08 41.79 0.17 2.32 16 17 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 18 C 0.12 3.15 5.39 86.38 0.47 3.62 16 19 N -0.70 -11.96 5.55 -463.06 -2.57 -14.54 16 20 C 0.52 12.15 7.82 87.66 0.69 12.84 16 21 O -0.59 -21.96 16.03 -3.04 -0.05 -22.01 16 22 C -0.04 -0.58 6.33 29.10 0.18 -0.40 16 23 C 0.23 5.09 6.63 138.63 0.92 6.01 16 24 N -0.58 -13.01 11.19 -191.81 -2.15 -15.16 16 25 C 0.27 3.75 13.13 180.36 2.37 6.12 16 26 N -0.48 -6.74 7.45 -60.49 -0.45 -7.19 16 27 H 0.46 2.76 8.96 -213.10 -1.91 0.85 16 28 N -0.34 -7.54 12.80 -51.34 -0.66 -8.19 16 29 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 31 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 32 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.08 7.95 -2.39 -0.02 1.06 16 35 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.03 1.29 7.05 -2.38 -0.02 1.27 16 37 H 0.05 1.55 7.89 -2.39 -0.02 1.53 16 38 H 0.43 2.61 8.48 -92.70 -0.79 1.82 16 39 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.27 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -106.91 374.95 -1.36 -108.26 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -1.60 Total: 9.12 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 7.98 Total: 19.81 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -8.51 Total: -122.54 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.10 Total: -50.72 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.16 Total: -10.27 kcal Total: -106.91 -1.36 -108.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705246156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.133 kcal (2) G-P(sol) polarization free energy of solvation -106.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds