Wall clock time and date at job start Tue Mar 31 2020 22:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99848 * 2 1 4 4 H 1.48501 * 109.47494 * 240.00124 * 3 2 1 5 5 H 1.48501 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47228 * 119.99967 * 3 2 1 7 7 C 1.38954 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99904 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99963 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00028 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00181 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47416 * 179.97438 * 12 10 9 14 14 C 1.46891 * 111.00236 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.85375 * 23.80422 * 14 13 12 16 16 C 1.53778 * 113.61601 * 154.99847 * 14 13 12 17 17 C 1.53787 * 87.08069 * 89.11622 * 16 14 13 18 18 H 1.08990 * 113.61394 * 270.80166 * 17 16 14 19 19 C 1.53000 * 113.61270 * 139.97924 * 17 16 14 20 20 N 1.46499 * 109.46840 * 176.52995 * 19 17 16 21 21 C 1.34779 * 119.99872 * 180.02562 * 20 19 17 22 22 O 1.21567 * 119.99912 * 0.02562 * 21 20 19 23 23 C 1.47751 * 119.99834 * 180.02562 * 21 20 19 24 24 C 1.39351 * 124.11423 * 179.72717 * 23 21 20 25 25 N 1.30097 * 112.14340 * 179.81937 * 24 23 21 26 26 S 1.55918 * 108.75526 * 0.42763 * 25 24 23 27 27 N 1.31495 * 124.11768 * 0.02562 * 23 21 20 28 28 C 1.53783 * 87.17078 * 25.39268 * 17 16 14 29 29 H 0.96998 * 120.00083 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00087 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46794 * 59.99944 * 12 10 9 32 32 H 1.09001 * 109.47011 * 300.00363 * 12 10 9 33 33 H 1.00902 * 110.99321 * 56.04476 * 13 12 10 34 34 H 1.09000 * 113.61215 * 334.57211 * 16 14 13 35 35 H 1.08993 * 113.69471 * 203.67273 * 16 14 13 36 36 H 1.09002 * 109.47398 * 296.53321 * 19 17 16 37 37 H 1.09001 * 109.47194 * 56.53501 * 19 17 16 38 38 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 39 39 H 1.08000 * 123.93253 * 0.02562 * 24 23 21 40 40 H 1.09003 * 113.61584 * 89.15627 * 28 17 16 41 41 H 1.09000 * 113.61286 * 220.05881 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4983 -7.2708 -0.0039 15 1 0.4888 -7.2046 -0.4096 16 6 2.3274 -8.4206 -0.5999 17 6 2.8732 -8.6575 0.8182 18 1 3.7694 -8.0795 1.0433 19 6 3.0134 -10.1371 1.1817 20 7 3.6150 -10.2581 2.5120 21 6 3.8362 -11.4769 3.0431 22 8 3.5370 -12.4758 2.4181 23 6 4.4423 -11.5990 4.3850 24 6 4.7033 -12.8132 5.0172 25 7 5.2429 -12.6495 6.1897 26 16 5.3913 -11.1220 6.4644 27 7 4.7960 -10.5752 5.1305 28 6 1.5780 -8.0147 1.3417 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0016 31 1 0.6176 -4.9205 -0.8924 32 1 0.6169 -4.9209 0.8875 33 1 2.8334 -5.9127 0.7787 34 1 3.0855 -8.0899 -1.3099 35 1 1.7238 -9.2453 -0.9788 36 1 2.0292 -10.6056 1.1839 37 1 3.6501 -10.6326 0.4487 38 1 3.8541 -9.4612 3.0106 39 1 4.4863 -13.7779 4.5829 40 1 0.7678 -8.7275 1.4952 41 1 1.7319 -7.3567 2.1970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707076853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:02 Heat of formation + Delta-G solvation = 10.295792 kcal Electronic energy + Delta-G solvation = -25270.614718 eV Core-core repulsion = 21313.363919 eV Total energy + Delta-G solvation = -3957.250799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56642 -39.97705 -39.07407 -38.03517 -35.27330 -34.19904 -33.92071 -32.99814 -31.21618 -28.98838 -27.50509 -26.17460 -25.76851 -24.08375 -23.45635 -22.23128 -20.84727 -19.86933 -19.35578 -19.11315 -18.11845 -17.89035 -16.59859 -16.40093 -16.08526 -15.95446 -15.52453 -15.35987 -15.00849 -14.58848 -14.40760 -14.23603 -13.85781 -13.66640 -13.10925 -12.75554 -12.72434 -12.62522 -12.33349 -11.96615 -11.90844 -11.69214 -11.56535 -11.53880 -11.52303 -11.05399 -10.97097 -10.71853 -10.45521 -10.44965 -10.24436 -10.19974 -9.75102 -9.51638 -9.40463 -8.47580 -8.07524 -7.97454 -6.43116 -3.84059 -0.06786 0.89489 1.06611 1.12959 2.67218 2.69180 3.19008 3.24838 3.29172 3.88969 3.97562 4.02838 4.24431 4.30770 4.41483 4.52680 4.60425 4.61987 4.86664 4.98747 5.06139 5.15777 5.25008 5.35961 5.42519 5.58008 5.62337 5.72206 5.79311 5.84972 5.89353 5.98422 6.07180 6.09876 6.20031 6.29742 7.04707 7.23768 7.53572 7.63405 7.67352 8.04481 8.59553 9.16175 9.52573 10.03935 10.74468 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.001753 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.633986 B =15970.322680 C =17317.161291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.649 5.649 14 C 0.068 3.932 15 H 0.084 0.916 16 C -0.120 4.120 17 C -0.124 4.124 18 H 0.100 0.900 19 C 0.129 3.871 20 N -0.704 5.704 21 C 0.603 3.397 22 O -0.525 6.525 23 C 0.010 3.990 24 C 0.090 3.910 25 N -0.579 5.579 26 S 0.727 5.273 27 N -0.547 5.547 28 C -0.167 4.167 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.350 0.650 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.215 0.785 40 H 0.085 0.915 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -24.034 10.073 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.081 4.081 13 N -0.280 5.280 14 C -0.043 4.043 15 H 0.103 0.897 16 C -0.159 4.159 17 C -0.143 4.143 18 H 0.118 0.882 19 C 0.006 3.994 20 N -0.355 5.355 21 C 0.383 3.617 22 O -0.401 6.401 23 C -0.165 4.165 24 C -0.104 4.104 25 N -0.420 5.420 26 S 0.768 5.232 27 N -0.397 5.397 28 C -0.206 4.206 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.247 0.753 39 H 0.231 0.769 40 H 0.103 0.897 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.521 -23.540 10.601 26.400 hybrid contribution -1.117 0.326 -0.202 1.181 sum 4.404 -23.214 10.399 25.815 Atomic orbital electron populations 1.69602 1.05932 1.28285 1.50470 1.25269 0.95646 0.99742 0.97288 0.85911 0.78756 0.80427 0.79078 1.19866 1.20977 1.19928 1.19655 0.93348 0.82244 1.47741 0.87972 1.41856 1.09206 1.04600 1.64282 1.19818 0.88389 0.84745 0.84545 1.90521 1.13770 1.87084 1.55496 1.21716 0.94358 0.90813 1.01249 1.59922 1.18114 0.99152 1.50858 1.22613 0.97328 0.89310 0.95093 0.89744 1.23024 1.00010 0.97593 0.95274 1.22826 0.98882 0.94002 0.98591 0.88200 1.21557 0.98595 0.96758 0.82444 1.45860 1.62158 1.07885 1.19624 1.16744 0.78327 0.84132 0.82500 1.90844 1.51947 1.36673 1.60637 1.22540 1.06529 0.88384 0.99076 1.23794 0.96551 1.01363 0.88678 1.72272 1.22887 1.25185 1.21655 1.79189 1.40420 0.89102 1.14445 1.72449 1.18717 1.36870 1.11652 1.23830 0.97564 1.00535 0.98663 0.91807 0.77444 0.89497 0.93779 0.82902 0.89940 0.89665 0.90835 0.90788 0.75291 0.76886 0.89654 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.24 7.82 -10.98 -0.09 10.15 16 11 O -0.58 -15.70 15.78 5.55 0.09 -15.61 16 12 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 13 N -0.65 -9.93 6.19 -107.04 -0.66 -10.59 16 14 C 0.07 0.76 4.28 -66.81 -0.29 0.48 16 15 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 16 C -0.12 -1.15 7.44 -25.92 -0.19 -1.34 16 17 C -0.12 -1.09 3.51 -89.80 -0.32 -1.40 16 18 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 19 C 0.13 1.09 5.50 -4.04 -0.02 1.07 16 20 N -0.70 -6.17 5.55 -61.28 -0.34 -6.51 16 21 C 0.60 6.05 7.82 -12.37 -0.10 5.96 16 22 O -0.53 -6.49 16.81 5.31 0.09 -6.41 16 23 C 0.01 0.09 6.81 -83.71 -0.57 -0.48 16 24 C 0.09 0.70 11.22 -17.87 -0.20 0.50 16 25 N -0.58 -4.57 11.41 19.43 0.22 -4.35 16 26 S 0.73 4.43 23.69 -107.50 -2.55 1.88 16 27 N -0.55 -4.52 11.00 23.18 0.26 -4.27 16 28 C -0.17 -1.54 7.17 -25.82 -0.19 -1.72 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 31 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.35 5.54 7.82 -39.29 -0.31 5.23 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.41 3.32 8.06 -40.82 -0.33 2.99 16 39 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 41 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -33.08 370.16 -8.97 -42.05 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.07 Total: 14.09 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -2.23 Total: 6.07 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: 0.14 Total: -63.56 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.18 Total: -22.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -2.55 Total: 1.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.08 -8.97 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707076853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.345 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds