Wall clock time and date at job start Tue Mar 31 2020 22:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00199 * 2 1 4 4 H 1.48498 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46904 * 300.00705 * 3 2 1 6 6 H 1.48498 * 109.46621 * 60.00288 * 3 2 1 7 7 C 1.38951 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00246 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00280 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99716 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99885 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.46821 * 180.02562 * 12 10 9 14 14 C 1.46903 * 111.00214 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47467 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.88792 * 54.29646 * 15 14 13 17 17 C 1.55156 * 111.03706 * 178.20042 * 15 14 13 18 18 C 1.54332 * 102.94209 * 153.58751 * 17 15 14 19 19 N 1.47015 * 107.26886 * 337.80910 * 18 17 15 20 20 C 1.34783 * 125.64779 * 178.90156 * 19 18 17 21 21 O 1.21601 * 119.99775 * 180.02562 * 20 19 18 22 22 C 1.47440 * 119.99589 * 0.04361 * 20 19 18 23 23 C 1.37989 * 124.15507 * 179.72490 * 22 20 19 24 24 S 1.72095 * 104.03510 * 179.89933 * 23 22 20 25 25 N 1.56405 * 96.15579 * 0.32720 * 24 23 22 26 26 N 1.27417 * 109.87508 * 359.79805 * 25 24 23 27 27 C 1.47431 * 108.70730 * 358.93962 * 19 18 17 28 28 H 0.97001 * 120.00169 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99894 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47567 * 59.99727 * 12 10 9 31 31 H 1.08999 * 109.46878 * 299.99890 * 12 10 9 32 32 H 1.00899 * 110.99939 * 303.94866 * 13 12 10 33 33 H 1.09004 * 109.47185 * 59.99194 * 14 13 12 34 34 H 1.09007 * 109.46697 * 300.00100 * 14 13 12 35 35 H 1.08996 * 110.72238 * 271.95665 * 17 15 14 36 36 H 1.09009 * 110.71921 * 35.22878 * 17 15 14 37 37 H 1.08996 * 109.88132 * 218.38812 * 18 17 15 38 38 H 1.08998 * 110.00384 * 97.29733 * 18 17 15 39 39 H 1.08006 * 127.97717 * 359.97350 * 23 22 20 40 40 H 1.08998 * 110.36348 * 265.28842 * 27 19 18 41 41 H 1.08997 * 110.45921 * 143.01263 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 7 2.1982 -5.9795 -0.0004 14 6 1.4979 -7.2709 -0.0003 15 6 2.5228 -8.4068 -0.0002 16 1 3.2244 -8.2972 0.8268 17 6 1.8212 -9.7900 0.0454 18 6 2.8504 -10.7220 -0.6283 19 7 3.7224 -9.8802 -1.4604 20 6 4.7642 -10.3153 -2.1966 21 8 5.4193 -9.5257 -2.8493 22 6 5.1091 -11.7488 -2.2109 23 6 6.1519 -12.2875 -2.9364 24 16 6.0851 -13.9693 -2.5775 25 7 4.8468 -13.8885 -1.6255 26 7 4.4508 -12.6811 -1.5313 27 6 3.2693 -8.4812 -1.3555 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6172 -4.9205 -0.8913 31 1 0.6167 -4.9208 0.8886 32 1 2.8336 -5.9125 -0.7813 33 1 0.8733 -7.3455 -0.8905 34 1 0.8726 -7.3450 0.8895 35 1 1.6394 -10.0965 1.0754 36 1 0.8905 -9.7692 -0.5218 37 1 2.3360 -11.4531 -1.2519 38 1 3.4429 -11.2335 0.1303 39 1 6.8497 -11.7723 -3.5800 40 1 2.5927 -8.2392 -2.1751 41 1 4.1228 -7.8033 -1.3562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713350895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:44 Heat of formation + Delta-G solvation = 11.812632 kcal Electronic energy + Delta-G solvation = -25735.812908 eV Core-core repulsion = 21778.627884 eV Total energy + Delta-G solvation = -3957.185024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57666 -39.97435 -38.39995 -37.86890 -35.39829 -33.85388 -32.76628 -31.95704 -31.18229 -29.59025 -27.94856 -26.92174 -25.54777 -24.18563 -23.08939 -22.34537 -20.92605 -20.46235 -19.28695 -18.91460 -17.86507 -17.13255 -16.69083 -16.54653 -16.33913 -15.76393 -15.40977 -15.33591 -14.67195 -14.48828 -14.36221 -13.87158 -13.68094 -13.48552 -13.36381 -13.13783 -12.94633 -12.59620 -12.52583 -12.32461 -11.98622 -11.57385 -11.49650 -11.21366 -11.05451 -10.95743 -10.86767 -10.75491 -10.56798 -10.51202 -10.40237 -10.32680 -10.20615 -9.50338 -8.95429 -8.45744 -8.06408 -7.94256 -6.40229 -3.80836 -0.43384 0.41712 1.00311 1.03788 2.55923 2.75466 3.17865 3.28337 3.34150 3.36024 3.92496 4.00321 4.15058 4.23680 4.31086 4.36264 4.53076 4.77900 4.83355 5.03414 5.10207 5.18807 5.27423 5.29887 5.45334 5.54648 5.60119 5.67293 5.68970 5.81141 5.86253 5.96793 5.99378 6.15189 6.28460 6.96412 7.10471 7.19922 7.57203 7.63636 7.69086 8.08428 8.63080 9.19830 9.56168 10.07696 10.77617 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.001713 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.392158 B =16342.150174 C =17106.387330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.671 5.671 14 C 0.071 3.929 15 C -0.097 4.097 16 H 0.098 0.902 17 C -0.128 4.128 18 C 0.109 3.891 19 N -0.598 5.598 20 C 0.614 3.386 21 O -0.522 6.522 22 C -0.018 4.018 23 C -0.235 4.235 24 S 0.462 5.538 25 N -0.292 5.292 26 N -0.207 5.207 27 C 0.106 3.894 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.349 0.651 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.210 0.790 40 H 0.072 0.928 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -30.084 -4.631 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.303 5.303 14 C -0.059 4.059 15 C -0.117 4.117 16 H 0.117 0.883 17 C -0.167 4.167 18 C -0.014 4.014 19 N -0.331 5.331 20 C 0.397 3.603 21 O -0.397 6.397 22 C -0.165 4.165 23 C -0.392 4.392 24 S 0.598 5.402 25 N -0.273 5.273 26 N -0.078 5.078 27 C -0.015 4.015 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.169 0.831 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.227 0.773 40 H 0.090 0.910 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.799 -31.238 -3.680 31.984 hybrid contribution -0.492 2.318 -1.291 2.698 sum 5.307 -28.920 -4.972 29.820 Atomic orbital electron populations 1.69619 1.05931 1.28020 1.50796 1.25262 0.95641 0.99723 0.97379 0.85799 0.79737 0.81133 0.77672 1.19208 1.20795 1.20755 1.19764 0.93420 0.82231 1.47367 0.87854 1.41871 1.09195 1.04615 1.64445 1.19823 0.88404 0.84745 0.84446 1.90530 1.13760 1.87058 1.55277 1.21671 0.94337 0.90950 1.01251 1.60076 1.18896 0.99929 1.51422 1.21897 0.94737 0.88341 1.00939 1.22425 0.97850 0.93965 0.97446 0.88332 1.22742 0.98002 0.94084 1.01845 1.22166 0.91818 0.93156 0.94258 1.48233 1.29249 1.10068 1.45531 1.16226 0.80017 0.84097 0.79921 1.90884 1.51318 1.54411 1.43127 1.22613 0.96609 0.97063 1.00210 1.28915 1.03299 1.01729 1.05288 1.81579 1.24474 1.03425 1.30707 1.78680 1.13071 1.15691 1.19830 1.71696 1.23916 0.93821 1.18332 1.22484 0.99740 0.81703 0.97604 0.91954 0.77469 0.93826 0.89515 0.83122 0.95117 0.90291 0.89435 0.90286 0.90645 0.90430 0.77345 0.90961 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 9 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 10 C 0.44 10.47 7.82 -10.98 -0.09 10.39 16 11 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 N -0.67 -10.56 6.13 -115.06 -0.70 -11.26 16 14 C 0.07 0.79 5.19 -3.82 -0.02 0.77 16 15 C -0.10 -0.97 3.27 -88.47 -0.29 -1.26 16 16 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.13 -0.97 6.42 -24.89 -0.16 -1.13 16 18 C 0.11 0.95 5.49 -3.06 -0.02 0.94 16 19 N -0.60 -6.68 3.33 -171.78 -0.57 -7.25 16 20 C 0.61 7.63 7.84 -12.51 -0.10 7.53 16 21 O -0.52 -8.00 17.05 5.28 0.09 -7.91 16 22 C -0.02 -0.18 6.76 -83.78 -0.57 -0.74 16 23 C -0.24 -1.61 11.21 30.64 0.34 -1.27 16 24 S 0.46 2.28 23.38 -107.50 -2.51 -0.23 16 25 N -0.29 -2.52 12.49 60.35 0.75 -1.77 16 26 N -0.21 -2.04 8.86 32.74 0.29 -1.75 16 27 C 0.11 1.20 5.72 -2.53 -0.01 1.19 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.35 5.78 7.75 -39.29 -0.30 5.48 16 33 H 0.03 0.32 8.03 -51.93 -0.42 -0.10 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.53 8.04 -51.92 -0.42 0.12 16 37 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 38 H 0.08 0.69 7.55 -51.93 -0.39 0.30 16 39 H 0.21 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 41 H 0.09 1.18 7.98 -51.93 -0.41 0.76 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -34.71 364.42 -7.74 -42.45 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.13 Total: 11.14 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -1.18 Total: 9.20 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.43 Total: -60.44 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.18 Total: -23.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.51 Total: -0.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.71 -7.74 -42.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713350895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.266 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds