Wall clock time and date at job start Tue Mar 31 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00199 * 2 1 4 4 H 1.48498 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46904 * 300.00705 * 3 2 1 6 6 H 1.48498 * 109.46621 * 60.00288 * 3 2 1 7 7 C 1.38951 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00246 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00280 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99716 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99885 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.46821 * 180.02562 * 12 10 9 14 14 C 1.46903 * 111.00214 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47467 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.88792 * 54.29646 * 15 14 13 17 17 C 1.55156 * 111.03706 * 178.20042 * 15 14 13 18 18 C 1.54332 * 102.94209 * 153.58751 * 17 15 14 19 19 N 1.47015 * 107.26886 * 337.80910 * 18 17 15 20 20 C 1.34783 * 125.64779 * 178.90156 * 19 18 17 21 21 O 1.21601 * 119.99775 * 180.02562 * 20 19 18 22 22 C 1.47440 * 119.99589 * 0.04361 * 20 19 18 23 23 C 1.37989 * 124.15507 * 179.72490 * 22 20 19 24 24 S 1.72095 * 104.03510 * 179.89933 * 23 22 20 25 25 N 1.56405 * 96.15579 * 0.32720 * 24 23 22 26 26 N 1.27417 * 109.87508 * 359.79805 * 25 24 23 27 27 C 1.47431 * 108.70730 * 358.93962 * 19 18 17 28 28 H 0.97001 * 120.00169 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99894 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47567 * 59.99727 * 12 10 9 31 31 H 1.08999 * 109.46878 * 299.99890 * 12 10 9 32 32 H 1.00899 * 110.99939 * 303.94866 * 13 12 10 33 33 H 1.09004 * 109.47185 * 59.99194 * 14 13 12 34 34 H 1.09007 * 109.46697 * 300.00100 * 14 13 12 35 35 H 1.08996 * 110.72238 * 271.95665 * 17 15 14 36 36 H 1.09009 * 110.71921 * 35.22878 * 17 15 14 37 37 H 1.08996 * 109.88132 * 218.38812 * 18 17 15 38 38 H 1.08998 * 110.00384 * 97.29733 * 18 17 15 39 39 H 1.08006 * 127.97717 * 359.97350 * 23 22 20 40 40 H 1.08998 * 110.36348 * 265.28842 * 27 19 18 41 41 H 1.08997 * 110.45921 * 143.01263 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 7 2.1982 -5.9795 -0.0004 14 6 1.4979 -7.2709 -0.0003 15 6 2.5228 -8.4068 -0.0002 16 1 3.2244 -8.2972 0.8268 17 6 1.8212 -9.7900 0.0454 18 6 2.8504 -10.7220 -0.6283 19 7 3.7224 -9.8802 -1.4604 20 6 4.7642 -10.3153 -2.1966 21 8 5.4193 -9.5257 -2.8493 22 6 5.1091 -11.7488 -2.2109 23 6 6.1519 -12.2875 -2.9364 24 16 6.0851 -13.9693 -2.5775 25 7 4.8468 -13.8885 -1.6255 26 7 4.4508 -12.6811 -1.5313 27 6 3.2693 -8.4812 -1.3555 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6172 -4.9205 -0.8913 31 1 0.6167 -4.9208 0.8886 32 1 2.8336 -5.9125 -0.7813 33 1 0.8733 -7.3455 -0.8905 34 1 0.8726 -7.3450 0.8895 35 1 1.6394 -10.0965 1.0754 36 1 0.8905 -9.7692 -0.5218 37 1 2.3360 -11.4531 -1.2519 38 1 3.4429 -11.2335 0.1303 39 1 6.8497 -11.7723 -3.5800 40 1 2.5927 -8.2392 -2.1751 41 1 4.1228 -7.8033 -1.3562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713350895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:43 Heat of formation + Delta-G solvation = -15.924020 kcal Electronic energy + Delta-G solvation = -25737.015660 eV Core-core repulsion = 21778.627884 eV Total energy + Delta-G solvation = -3958.387775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.25642 -40.80239 -40.13212 -38.93407 -36.65575 -35.82105 -33.58251 -33.25785 -32.75137 -30.46607 -28.89797 -27.96003 -26.85270 -25.62354 -24.06562 -23.13668 -21.60216 -21.36189 -20.98283 -19.94567 -19.68554 -18.11897 -17.64321 -17.38136 -17.28641 -17.05908 -16.51008 -16.39534 -16.07356 -15.96866 -15.58973 -15.09457 -15.01060 -14.80881 -14.29523 -14.04159 -14.00526 -13.67080 -13.52061 -13.30204 -13.15587 -13.05538 -12.97087 -12.67294 -12.41392 -12.13820 -12.04120 -11.83346 -11.63108 -11.53183 -11.51232 -11.24779 -11.20994 -10.91382 -10.34812 -10.01306 -9.83534 -9.31043 -8.46998 -5.95533 -0.98014 -0.09311 0.26461 0.50629 1.36344 1.41556 1.55869 1.75965 1.90467 2.05753 2.29224 2.64944 2.91827 3.20381 3.39788 3.54319 3.58896 3.62024 3.78669 3.96350 4.26294 4.30091 4.33729 4.37450 4.42660 4.50919 4.58894 4.65115 4.73658 4.86059 4.90942 4.97135 5.07163 5.21032 5.37789 5.41190 5.89560 6.11656 6.20730 6.38078 6.39074 6.60546 6.80679 7.12965 7.56667 8.12525 8.70574 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.001713 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.392158 B =16342.150174 C =17106.387330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.066 3.934 13 N -0.688 5.688 14 C 0.074 3.926 15 C -0.089 4.089 16 H 0.085 0.915 17 C -0.115 4.115 18 C 0.110 3.890 19 N -0.600 5.600 20 C 0.607 3.393 21 O -0.565 6.565 22 C -0.044 4.044 23 C -0.241 4.241 24 S 0.569 5.431 25 N -0.330 5.330 26 N -0.223 5.223 27 C 0.104 3.896 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.341 0.659 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.224 0.776 40 H 0.076 0.924 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -31.868 -4.601 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.321 5.321 14 C -0.054 4.054 15 C -0.108 4.108 16 H 0.103 0.897 17 C -0.153 4.153 18 C -0.012 4.012 19 N -0.331 5.331 20 C 0.392 3.608 21 O -0.444 6.444 22 C -0.191 4.191 23 C -0.397 4.397 24 S 0.704 5.296 25 N -0.311 5.311 26 N -0.093 5.093 27 C -0.018 4.018 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.241 0.759 40 H 0.094 0.906 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.847 -33.058 -3.622 33.607 hybrid contribution -0.119 2.714 -1.348 3.033 sum 4.727 -30.343 -4.970 31.109 Atomic orbital electron populations 1.69671 1.06750 1.29227 1.50372 1.26027 0.96571 1.02356 0.96294 0.84877 0.77961 0.77149 0.78373 1.19986 1.19550 1.19494 1.19697 0.92668 0.84137 1.49894 0.90509 1.41935 1.09354 1.04688 1.65083 1.20991 0.88278 0.86345 0.82096 1.90499 1.16057 1.88015 1.56657 1.21541 0.93941 0.87823 1.03371 1.60092 1.19270 1.01334 1.51381 1.21997 0.94890 0.86118 1.02443 1.22300 0.97479 0.95187 0.95862 0.89669 1.22746 0.97771 0.91572 1.03199 1.22276 0.91698 0.93208 0.93988 1.48380 1.29193 1.10282 1.45266 1.16633 0.79743 0.85078 0.79368 1.90842 1.52775 1.55791 1.45004 1.22378 0.98390 0.96062 1.02293 1.29271 1.02460 1.03550 1.04462 1.81195 1.20905 1.00321 1.27186 1.78349 1.15467 1.15395 1.21862 1.71732 1.24608 0.94014 1.18911 1.22450 0.98911 0.81630 0.98784 0.91283 0.76876 0.91381 0.87305 0.84112 0.93406 0.88659 0.87449 0.88659 0.90113 0.90556 0.75888 0.90600 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.85 13.05 21.66 0.28 -49.56 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.33 -19.32 9.68 84.04 0.81 -18.50 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.75 5.29 -306.98 -1.62 -31.37 16 10 C 0.44 21.01 7.82 87.66 0.69 21.69 16 11 O -0.63 -35.63 15.78 -3.06 -0.05 -35.67 16 12 C 0.07 2.20 6.17 85.56 0.53 2.73 16 13 N -0.69 -21.26 6.13 -517.93 -3.17 -24.43 16 14 C 0.07 1.51 5.19 86.30 0.45 1.96 16 15 C -0.09 -1.68 3.27 -9.40 -0.03 -1.71 16 16 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 17 C -0.11 -1.46 6.42 31.79 0.20 -1.26 16 18 C 0.11 1.83 5.49 86.73 0.48 2.31 16 19 N -0.60 -13.67 3.33 -815.64 -2.71 -16.38 16 20 C 0.61 15.72 7.84 86.67 0.68 16.40 16 21 O -0.57 -18.39 17.05 -4.03 -0.07 -18.46 16 22 C -0.04 -0.87 6.76 41.36 0.28 -0.59 16 23 C -0.24 -3.04 11.21 67.76 0.76 -2.29 16 24 S 0.57 4.30 23.38 -56.49 -1.32 2.98 16 25 N -0.33 -5.21 12.49 37.02 0.46 -4.75 16 26 N -0.22 -4.26 8.86 -50.34 -0.45 -4.71 16 27 C 0.10 2.43 5.72 86.85 0.50 2.92 16 28 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 29 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.34 11.51 7.75 -89.69 -0.69 10.82 16 33 H 0.05 0.85 8.03 -2.38 -0.02 0.83 16 34 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 0.97 8.04 -2.38 -0.02 0.95 16 37 H 0.08 1.29 7.68 -2.39 -0.02 1.27 16 38 H 0.08 1.31 7.55 -2.39 -0.02 1.29 16 39 H 0.22 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.08 1.68 7.96 -2.39 -0.02 1.66 16 41 H 0.06 1.76 7.98 -2.39 -0.02 1.74 16 Total: -1.00 -78.14 364.42 -1.14 -79.29 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.33 Total: 34.05 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 5.81 Total: 23.44 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -7.21 Total: -131.21 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.12 Total: -54.13 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.32 Total: 2.98 kcal Total: -78.14 -1.14 -79.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713350895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.362 kcal (2) G-P(sol) polarization free energy of solvation -78.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds