Wall clock time and date at job start Tue Mar 31 2020 22:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48494 * 109.46887 * 269.99484 * 3 2 1 5 5 H 1.48501 * 109.46979 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.46801 * 149.99654 * 3 2 1 7 7 C 1.38952 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00469 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00123 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99468 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00173 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47380 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00035 * 186.11360 * 13 12 10 15 15 H 1.08995 * 109.47531 * 342.69615 * 14 13 12 16 16 C 1.53005 * 109.47162 * 222.69746 * 14 13 12 17 17 N 1.46506 * 109.47001 * 54.99907 * 16 14 13 18 18 C 1.34767 * 120.00105 * 180.02562 * 17 16 14 19 19 O 1.21623 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.47175 * 120.00312 * 180.02562 * 18 17 16 21 21 C 1.38245 * 128.47847 * 180.02562 * 20 18 17 22 22 N 1.31237 * 111.88658 * 180.28802 * 21 20 18 23 23 N 1.27336 * 120.03976 * 359.45583 * 22 21 20 24 24 S 1.56642 * 109.73981 * 0.52882 * 23 22 21 25 25 C 1.53000 * 109.47223 * 102.70281 * 14 13 12 26 26 C 1.52997 * 117.49679 * 11.53178 * 25 14 13 27 27 C 1.53009 * 117.49435 * 302.87434 * 25 14 13 28 28 H 0.96993 * 120.00077 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00043 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47413 * 60.00025 * 12 10 9 31 31 H 1.09003 * 109.47205 * 300.00307 * 12 10 9 32 32 H 1.00898 * 110.99717 * 62.15723 * 13 12 10 33 33 H 1.08999 * 109.46957 * 295.00793 * 16 14 13 34 34 H 1.08994 * 109.47549 * 174.99873 * 16 14 13 35 35 H 0.97006 * 119.99722 * 0.02562 * 17 16 14 36 36 H 1.07997 * 124.05364 * 0.02562 * 21 20 18 37 37 H 1.08996 * 115.55230 * 157.21083 * 25 14 13 38 38 H 1.08998 * 117.50547 * 0.02562 * 26 25 14 39 39 H 1.09008 * 117.49654 * 145.02780 * 26 25 14 40 40 H 1.08996 * 117.49602 * 214.97960 * 27 25 14 41 41 H 1.09001 * 117.49681 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0004 14 6 1.5040 -7.2657 -0.1451 15 1 0.4468 -7.1361 0.0860 16 6 2.1148 -8.2868 0.8168 17 7 2.0789 -7.7546 2.1813 18 6 2.5671 -8.4856 3.2028 19 8 3.0380 -9.5870 2.9919 20 6 2.5305 -7.9512 4.5736 21 6 2.9778 -8.5435 5.7400 22 7 2.7787 -7.7761 6.7858 23 7 2.2399 -6.6312 6.6431 24 16 1.9014 -6.3904 5.1328 25 6 1.6541 -7.7666 -1.5830 26 6 2.6637 -7.0474 -2.4798 27 6 1.1626 -6.8499 -2.7052 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6169 -4.9209 -0.8886 31 1 0.6175 -4.9205 0.8914 32 1 2.7685 -5.9685 0.8329 33 1 3.1481 -8.4829 0.5305 34 1 1.5435 -9.2140 0.7734 35 1 1.7036 -6.8760 2.3495 36 1 3.4324 -9.5221 5.7855 37 1 1.5335 -8.8409 -1.7217 38 1 3.2214 -6.2178 -2.0454 39 1 3.2072 -7.6487 -3.2088 40 1 0.7191 -7.3213 -3.5822 41 1 0.7320 -5.8903 -2.4190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713862001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:06 Heat of formation + Delta-G solvation = 40.002945 kcal Electronic energy + Delta-G solvation = -26511.913429 eV Core-core repulsion = 22555.950829 eV Total energy + Delta-G solvation = -3955.962600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17967 -40.11071 -38.83970 -37.76111 -35.45367 -34.16653 -33.48523 -32.49687 -31.30071 -30.02836 -27.85763 -26.25527 -24.42271 -23.84358 -22.54579 -22.03849 -21.08380 -19.96096 -19.60704 -19.28557 -18.13173 -17.89065 -16.52806 -16.37747 -16.14287 -15.91860 -15.68518 -15.18671 -14.90503 -14.62332 -14.49695 -14.41840 -13.92447 -13.72656 -13.43628 -13.05152 -12.64662 -12.47408 -12.31351 -12.01108 -11.80037 -11.57808 -11.31228 -11.14753 -11.04462 -10.74473 -10.52118 -10.45765 -10.44369 -10.28191 -10.21142 -10.12328 -9.90251 -9.57469 -9.56584 -8.58483 -8.20896 -8.03401 -6.48401 -3.89355 -0.63234 0.45013 1.12864 1.61206 2.50269 2.58568 3.13350 3.23011 3.28117 3.65513 3.77398 3.82225 4.04177 4.21744 4.23605 4.33171 4.52035 4.80675 4.95319 5.05113 5.17542 5.19752 5.23346 5.24442 5.34121 5.50447 5.57690 5.66597 5.70911 5.85222 5.93660 6.07176 6.16975 6.34147 6.69244 6.83477 6.99676 7.27744 7.40693 7.49103 7.58052 7.98881 8.53453 9.11320 9.46454 9.97396 10.69065 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.003452 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.805486 B = 8108.717996 C =10867.011514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.045 3.955 13 N -0.660 5.660 14 C 0.104 3.896 15 H 0.065 0.935 16 C 0.114 3.886 17 N -0.723 5.723 18 C 0.607 3.393 19 O -0.514 6.514 20 C -0.296 4.296 21 C 0.077 3.923 22 N -0.254 5.254 23 N -0.253 5.253 24 S 0.439 5.561 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.177 4.177 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.349 0.651 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.399 0.601 36 H 0.216 0.784 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -16.731 3.896 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.087 4.087 13 N -0.295 5.295 14 C -0.006 4.006 15 H 0.083 0.917 16 C -0.009 4.009 17 N -0.376 5.376 18 C 0.390 3.610 19 O -0.390 6.390 20 C -0.437 4.437 21 C -0.091 4.091 22 N -0.118 5.118 23 N -0.235 5.235 24 S 0.574 5.426 25 C -0.173 4.173 26 C -0.193 4.193 27 C -0.214 4.214 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.234 0.766 36 H 0.233 0.767 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.340 -15.738 4.146 16.330 hybrid contribution -0.381 -0.056 0.353 0.522 sum -1.721 -15.794 4.498 16.512 Atomic orbital electron populations 1.69600 1.05935 1.28242 1.50402 1.25248 0.95611 0.99714 0.97195 0.85878 0.79263 0.80836 0.78461 1.20365 1.20915 1.19403 1.19689 0.93360 0.82176 1.47732 0.87909 1.41863 1.09163 1.04607 1.64223 1.19731 0.88412 0.84546 0.84925 1.90543 1.13610 1.86953 1.55252 1.21918 0.94185 0.91281 1.01362 1.59983 1.22889 0.99922 1.46664 1.21270 0.96923 0.88887 0.93526 0.91730 1.21803 1.03424 0.97134 0.78572 1.45940 1.62684 1.21033 1.07907 1.16380 0.78284 0.84601 0.81716 1.90862 1.44959 1.19378 1.83830 1.28056 1.13243 1.02017 1.00405 1.24477 0.97881 1.02065 0.84656 1.70724 1.13662 0.98343 1.29033 1.78891 1.16427 1.13491 1.14649 1.82924 1.42771 1.13473 1.03384 1.22154 1.07699 0.97156 0.90303 1.22991 0.92025 1.03620 1.00637 1.22923 0.98630 1.00939 0.98928 0.91822 0.77524 0.89155 0.93907 0.83029 0.89503 0.90013 0.76589 0.76749 0.87901 0.85981 0.90127 0.89598 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.48 13.05 55.50 0.72 -22.76 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -7.95 9.68 -14.93 -0.14 -8.10 16 8 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 9 N -0.56 -13.18 5.29 -10.96 -0.06 -13.23 16 10 C 0.44 9.32 7.84 -10.99 -0.09 9.23 16 11 O -0.58 -14.49 15.91 5.55 0.09 -14.40 16 12 C 0.04 0.66 5.76 -4.98 -0.03 0.63 16 13 N -0.66 -8.61 3.99 -107.99 -0.43 -9.04 16 14 C 0.10 1.03 2.66 -67.71 -0.18 0.85 16 15 H 0.06 0.58 7.63 -51.93 -0.40 0.19 16 16 C 0.11 1.04 5.17 -4.04 -0.02 1.02 16 17 N -0.72 -6.64 4.90 -61.46 -0.30 -6.94 16 18 C 0.61 6.45 7.80 -12.64 -0.10 6.35 16 19 O -0.51 -6.85 16.98 5.26 0.09 -6.76 16 20 C -0.30 -2.85 6.81 -35.95 -0.24 -3.10 16 21 C 0.08 0.73 11.55 -17.80 -0.21 0.52 16 22 N -0.25 -2.90 11.54 30.36 0.35 -2.55 16 23 N -0.25 -2.94 12.51 60.35 0.75 -2.19 16 24 S 0.44 4.02 23.05 -107.50 -2.48 1.55 16 25 C -0.15 -1.54 5.69 -90.62 -0.52 -2.06 16 26 C -0.16 -1.87 9.86 -26.69 -0.26 -2.14 16 27 C -0.18 -1.98 10.07 -26.69 -0.27 -2.25 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.39 8.77 7.90 -40.82 -0.32 8.45 16 30 H 0.09 1.26 5.96 -51.93 -0.31 0.95 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.35 4.69 6.88 -39.29 -0.27 4.42 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.29 7.16 -40.82 -0.29 3.00 16 36 H 0.22 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.10 0.87 8.13 -51.93 -0.42 0.45 16 38 H 0.12 1.85 6.99 -51.93 -0.36 1.49 16 39 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.19 5.92 -51.93 -0.31 0.88 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -31.66 367.27 -7.63 -39.30 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -4.73 Total: 14.64 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.15 Total: 1.50 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 1.04 Total: -56.70 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.18 Total: -21.16 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -2.48 Total: 1.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.66 -7.63 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713862001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.299 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds