Wall clock time and date at job start Tue Mar 31 2020 22:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48494 * 109.46887 * 269.99484 * 3 2 1 5 5 H 1.48501 * 109.46979 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.46801 * 149.99654 * 3 2 1 7 7 C 1.38952 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00469 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00123 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99468 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00173 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47380 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00035 * 186.11360 * 13 12 10 15 15 H 1.08995 * 109.47531 * 342.69615 * 14 13 12 16 16 C 1.53005 * 109.47162 * 222.69746 * 14 13 12 17 17 N 1.46506 * 109.47001 * 54.99907 * 16 14 13 18 18 C 1.34767 * 120.00105 * 180.02562 * 17 16 14 19 19 O 1.21623 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.47175 * 120.00312 * 180.02562 * 18 17 16 21 21 C 1.38245 * 128.47847 * 180.02562 * 20 18 17 22 22 N 1.31237 * 111.88658 * 180.28802 * 21 20 18 23 23 N 1.27336 * 120.03976 * 359.45583 * 22 21 20 24 24 S 1.56642 * 109.73981 * 0.52882 * 23 22 21 25 25 C 1.53000 * 109.47223 * 102.70281 * 14 13 12 26 26 C 1.52997 * 117.49679 * 11.53178 * 25 14 13 27 27 C 1.53009 * 117.49435 * 302.87434 * 25 14 13 28 28 H 0.96993 * 120.00077 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00043 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47413 * 60.00025 * 12 10 9 31 31 H 1.09003 * 109.47205 * 300.00307 * 12 10 9 32 32 H 1.00898 * 110.99717 * 62.15723 * 13 12 10 33 33 H 1.08999 * 109.46957 * 295.00793 * 16 14 13 34 34 H 1.08994 * 109.47549 * 174.99873 * 16 14 13 35 35 H 0.97006 * 119.99722 * 0.02562 * 17 16 14 36 36 H 1.07997 * 124.05364 * 0.02562 * 21 20 18 37 37 H 1.08996 * 115.55230 * 157.21083 * 25 14 13 38 38 H 1.08998 * 117.50547 * 0.02562 * 26 25 14 39 39 H 1.09008 * 117.49654 * 145.02780 * 26 25 14 40 40 H 1.08996 * 117.49602 * 214.97960 * 27 25 14 41 41 H 1.09001 * 117.49681 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0004 14 6 1.5040 -7.2657 -0.1451 15 1 0.4468 -7.1361 0.0860 16 6 2.1148 -8.2868 0.8168 17 7 2.0789 -7.7546 2.1813 18 6 2.5671 -8.4856 3.2028 19 8 3.0380 -9.5870 2.9919 20 6 2.5305 -7.9512 4.5736 21 6 2.9778 -8.5435 5.7400 22 7 2.7787 -7.7761 6.7858 23 7 2.2399 -6.6312 6.6431 24 16 1.9014 -6.3904 5.1328 25 6 1.6541 -7.7666 -1.5830 26 6 2.6637 -7.0474 -2.4798 27 6 1.1626 -6.8499 -2.7052 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6169 -4.9209 -0.8886 31 1 0.6175 -4.9205 0.8914 32 1 2.7685 -5.9685 0.8329 33 1 3.1481 -8.4829 0.5305 34 1 1.5435 -9.2140 0.7734 35 1 1.7036 -6.8760 2.3495 36 1 3.4324 -9.5221 5.7855 37 1 1.5335 -8.8409 -1.7217 38 1 3.2214 -6.2178 -2.0454 39 1 3.2072 -7.6487 -3.2088 40 1 0.7191 -7.3213 -3.5822 41 1 0.7320 -5.8903 -2.4190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713862001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:06 Heat of formation + Delta-G solvation = 15.938791 kcal Electronic energy + Delta-G solvation = -26512.956929 eV Core-core repulsion = 22555.950829 eV Total energy + Delta-G solvation = -3957.006100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97663 -40.99005 -40.16373 -39.07189 -36.33398 -35.93712 -34.64175 -33.32889 -33.17577 -30.99451 -28.74641 -27.70534 -25.72888 -24.96657 -23.37234 -22.92198 -21.89557 -21.07402 -20.75905 -20.31613 -19.86701 -18.90334 -17.61181 -17.33368 -17.16916 -17.01628 -16.73593 -16.39859 -15.98825 -15.91400 -15.71817 -15.48416 -15.26077 -14.86019 -14.67250 -14.06872 -13.86374 -13.61801 -13.45272 -13.13846 -13.02059 -12.84406 -12.77642 -12.38066 -12.29469 -12.11785 -12.05870 -11.60692 -11.46819 -11.32138 -11.24358 -10.99684 -10.99178 -10.75977 -10.35169 -10.26520 -9.96456 -9.30137 -8.43749 -5.91101 -1.42077 -0.29883 0.35126 0.82704 1.38982 1.43698 1.54855 1.71197 1.78227 2.11007 2.30289 2.80769 2.90813 3.13091 3.24549 3.47790 3.51427 3.59208 3.72925 4.03322 4.16746 4.27609 4.39188 4.43408 4.46677 4.53598 4.57166 4.61254 4.75846 4.90151 5.02926 5.08103 5.23497 5.44093 5.44734 5.67710 5.90246 6.06347 6.11702 6.37416 6.50225 6.64710 6.77988 7.17633 7.62306 8.17993 8.73349 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.003452 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.805486 B = 8108.717996 C =10867.011514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.985 3.015 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.329 4.329 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.060 3.940 13 N -0.674 5.674 14 C 0.109 3.891 15 H 0.086 0.914 16 C 0.119 3.881 17 N -0.715 5.715 18 C 0.611 3.389 19 O -0.543 6.543 20 C -0.302 4.302 21 C 0.080 3.920 22 N -0.274 5.274 23 N -0.286 5.286 24 S 0.483 5.517 25 C -0.136 4.136 26 C -0.173 4.173 27 C -0.179 4.179 28 H 0.276 0.724 29 H 0.396 0.604 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.345 0.655 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.405 0.595 36 H 0.236 0.764 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -17.766 3.689 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.072 4.072 13 N -0.308 5.308 14 C 0.000 4.000 15 H 0.104 0.896 16 C -0.004 4.004 17 N -0.367 5.367 18 C 0.395 3.605 19 O -0.421 6.421 20 C -0.443 4.443 21 C -0.088 4.088 22 N -0.137 5.137 23 N -0.267 5.267 24 S 0.617 5.383 25 C -0.155 4.155 26 C -0.211 4.211 27 C -0.215 4.215 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.166 0.834 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.241 0.759 36 H 0.252 0.748 37 H 0.146 0.854 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.584 -16.768 3.942 17.418 hybrid contribution 0.027 0.231 0.353 0.422 sum -2.557 -16.537 4.295 17.276 Atomic orbital electron populations 1.69650 1.06648 1.29113 1.50584 1.25907 0.96435 1.02074 0.96535 0.85037 0.78009 0.77498 0.78491 1.19968 1.19719 1.19864 1.19604 0.92595 0.84101 1.49591 0.90483 1.41916 1.09287 1.04642 1.65260 1.20876 0.88257 0.86044 0.82094 1.90518 1.15861 1.87914 1.56290 1.21776 0.93818 0.88078 1.03571 1.59920 1.23206 1.00831 1.46830 1.21330 0.97737 0.87258 0.93719 0.89626 1.21769 1.03027 0.97445 0.78119 1.45887 1.62027 1.21074 1.07746 1.16410 0.77819 0.84228 0.82054 1.90852 1.46370 1.20610 1.84260 1.28025 1.13693 1.02481 1.00121 1.24822 0.97246 1.02551 0.84157 1.70755 1.14358 0.98574 1.30027 1.78740 1.17526 1.14026 1.16396 1.82697 1.41280 1.12456 1.01823 1.22284 1.05200 0.98227 0.89794 1.22852 0.92533 1.03526 1.02161 1.22937 0.97594 1.00789 1.00225 0.91432 0.76992 0.87786 0.90484 0.83389 0.90638 0.88279 0.75918 0.74759 0.85376 0.89482 0.89123 0.87977 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.56 13.05 21.66 0.28 -47.27 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 3 Si 0.99 41.73 29.55 68.60 2.03 43.76 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.33 -17.79 9.68 84.04 0.81 -16.98 16 8 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 9 N -0.57 -27.10 5.29 -306.98 -1.62 -28.73 16 10 C 0.44 18.70 7.84 87.66 0.69 19.39 16 11 O -0.62 -31.64 15.91 -3.07 -0.05 -31.68 16 12 C 0.06 1.65 5.76 85.55 0.49 2.14 16 13 N -0.67 -16.53 3.99 -495.59 -1.98 -18.51 16 14 C 0.11 1.83 2.66 44.92 0.12 1.95 16 15 H 0.09 1.17 7.63 -2.39 -0.02 1.15 16 16 C 0.12 1.87 5.17 86.38 0.45 2.32 16 17 N -0.71 -11.53 4.90 -466.62 -2.29 -13.81 16 18 C 0.61 11.95 7.80 86.59 0.68 12.63 16 19 O -0.54 -13.66 16.98 -4.10 -0.07 -13.73 16 20 C -0.30 -5.39 6.81 24.62 0.17 -5.22 16 21 C 0.08 1.43 11.55 84.78 0.98 2.41 16 22 N -0.27 -6.08 11.54 -57.87 -0.67 -6.75 16 23 N -0.29 -6.46 12.51 37.02 0.46 -6.00 16 24 S 0.48 8.21 23.05 -56.49 -1.30 6.91 16 25 C -0.14 -2.35 5.69 -10.79 -0.06 -2.41 16 26 C -0.17 -4.00 9.86 30.62 0.30 -3.70 16 27 C -0.18 -3.63 10.07 30.62 0.31 -3.32 16 28 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 29 H 0.40 17.70 7.90 -92.71 -0.73 16.97 16 30 H 0.10 2.67 5.96 -2.39 -0.01 2.66 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.35 8.88 6.88 -89.70 -0.62 8.26 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.40 5.66 7.16 -92.70 -0.66 5.00 16 36 H 0.24 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.13 1.64 8.13 -2.39 -0.02 1.63 16 38 H 0.09 2.68 6.99 -2.39 -0.02 2.66 16 39 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 1.87 5.92 -2.39 -0.01 1.85 16 Total: -1.00 -69.69 367.27 -0.69 -70.38 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.89 Total: 36.24 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.40 Total: 9.18 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.81 Total: -121.07 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.12 Total: -45.41 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 8.21 SS G_CDS: -1.30 Total: 6.91 kcal Total: -69.69 -0.69 -70.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713862001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.324 kcal (2) G-P(sol) polarization free energy of solvation -69.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds