Wall clock time and date at job start Tue Mar 31 2020 22:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86797 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47222 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47258 * 30.00069 * 3 2 1 6 6 H 1.48498 * 109.46909 * 149.99976 * 3 2 1 7 7 C 1.38953 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99739 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99803 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00220 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99532 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00136 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46836 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99821 * 183.51033 * 13 12 10 15 15 H 1.09000 * 109.46706 * 176.53839 * 14 13 12 16 16 C 1.52993 * 109.47455 * 296.53681 * 14 13 12 17 17 N 1.46509 * 109.47272 * 305.00275 * 16 14 13 18 18 C 1.34768 * 119.99984 * 180.27558 * 17 16 14 19 19 O 1.21624 * 120.00386 * 359.72177 * 18 17 16 20 20 C 1.47171 * 119.99974 * 179.72026 * 18 17 16 21 21 C 1.38245 * 128.47433 * 179.97438 * 20 18 17 22 22 N 1.31243 * 111.88756 * 180.02562 * 21 20 18 23 23 N 1.27336 * 120.03844 * 0.02562 * 22 21 20 24 24 S 1.56635 * 109.74020 * 359.69376 * 23 22 21 25 25 C 1.53003 * 109.47092 * 56.53885 * 14 13 12 26 26 C 1.52993 * 117.50061 * 134.30313 * 25 14 13 27 27 C 1.53005 * 117.49730 * 65.64504 * 25 14 13 28 28 H 0.97002 * 119.99594 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00354 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47359 * 60.00801 * 12 10 9 31 31 H 1.08989 * 109.47437 * 300.00251 * 12 10 9 32 32 H 1.00894 * 111.00492 * 307.46579 * 13 12 10 33 33 H 1.09004 * 109.47476 * 184.99774 * 16 14 13 34 34 H 1.08999 * 109.47370 * 64.99849 * 16 14 13 35 35 H 0.96997 * 119.99595 * 359.97438 * 17 16 14 36 36 H 1.08001 * 124.05865 * 0.02562 * 21 20 18 37 37 H 1.09000 * 115.54939 * 279.97645 * 25 14 13 38 38 H 1.09007 * 117.50067 * 0.02562 * 26 25 14 39 39 H 1.09004 * 117.49882 * 145.01805 * 26 25 14 40 40 H 1.08997 * 117.49370 * 214.97880 * 27 25 14 41 41 H 1.08997 * 117.49944 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2034 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5608 -2.3705 -0.0011 13 7 6.0504 -3.7556 -0.0004 14 6 7.5165 -3.7956 0.0835 15 1 7.8487 -4.8320 0.1442 16 6 8.1168 -3.1397 -1.1615 17 7 7.5825 -3.7888 -2.3613 18 6 7.9772 -3.3775 -3.5825 19 8 8.7731 -2.4640 -3.6887 20 6 7.4451 -4.0337 -4.7875 21 6 7.7258 -3.7568 -6.1126 22 7 7.0658 -4.5459 -6.9277 23 7 6.2811 -5.4330 -6.4599 24 16 6.2920 -5.3767 -4.8946 25 6 7.9767 -3.0386 1.3310 26 6 9.0397 -3.7027 2.2083 27 6 7.5900 -3.6195 2.6926 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3634 -0.0007 30 1 5.9241 -1.8568 0.8890 31 1 5.9241 -1.8567 -0.8909 32 1 5.6307 -4.2872 0.7474 33 1 9.2013 -3.2479 -1.1422 34 1 7.8576 -2.0810 -1.1753 35 1 6.9479 -4.5176 -2.2766 36 1 8.4064 -2.9840 -6.4380 37 1 8.0078 -1.9531 1.2374 38 1 9.4116 -4.6788 1.8966 39 1 9.7700 -3.0540 2.6922 40 1 7.3672 -2.9161 3.4949 41 1 7.0075 -4.5407 2.6997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713862002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:09 Heat of formation + Delta-G solvation = 38.962581 kcal Electronic energy + Delta-G solvation = -26619.206202 eV Core-core repulsion = 22663.198489 eV Total energy + Delta-G solvation = -3956.007714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05450 -39.99997 -38.98892 -38.00210 -35.47167 -34.22698 -33.61549 -32.36074 -31.71482 -29.64208 -27.80577 -26.65004 -24.40763 -23.68919 -22.58210 -22.28330 -20.92772 -20.22388 -19.48764 -19.28460 -18.50839 -17.68149 -16.95437 -16.34373 -16.13121 -15.61993 -15.47021 -15.18986 -15.06059 -14.92705 -14.59395 -14.27315 -13.93590 -13.75116 -13.24088 -12.94135 -12.74631 -12.51534 -12.38998 -12.20322 -12.00078 -11.96631 -11.80218 -11.30579 -11.16191 -10.65157 -10.63322 -10.55337 -10.47150 -10.33932 -10.30932 -10.08413 -10.02672 -9.62624 -9.33893 -8.69736 -8.36543 -8.23190 -6.36280 -3.87937 -0.50708 0.57676 1.25030 1.72999 2.67691 2.77056 2.98261 3.03670 3.12036 3.47223 3.67697 3.77735 4.03689 4.06984 4.25388 4.42111 4.46010 4.60004 4.68275 4.78332 4.89771 5.02941 5.11593 5.18123 5.30867 5.39398 5.41544 5.60326 5.65433 5.66522 5.74274 5.85281 5.86187 5.92989 6.07286 6.87670 7.13905 7.37796 7.39760 7.51976 7.80119 8.08597 8.53324 8.89212 9.36804 9.75532 10.76636 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007836 B = 0.003748 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.515400 B = 7469.692920 C = 9696.745776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.448 3.552 11 O -0.567 6.567 12 C 0.043 3.957 13 N -0.658 5.658 14 C 0.103 3.897 15 H 0.093 0.907 16 C 0.131 3.869 17 N -0.703 5.703 18 C 0.601 3.399 19 O -0.524 6.524 20 C -0.290 4.290 21 C 0.072 3.928 22 N -0.255 5.255 23 N -0.260 5.260 24 S 0.443 5.557 25 C -0.190 4.190 26 C -0.172 4.172 27 C -0.172 4.172 28 H 0.274 0.726 29 H 0.370 0.630 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.358 0.642 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.215 0.785 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.565 -7.690 -1.303 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.227 5.227 10 C 0.234 3.766 11 O -0.450 6.450 12 C -0.090 4.090 13 N -0.290 5.290 14 C -0.008 4.008 15 H 0.111 0.889 16 C 0.007 3.993 17 N -0.355 5.355 18 C 0.384 3.616 19 O -0.401 6.401 20 C -0.431 4.431 21 C -0.095 4.095 22 N -0.119 5.119 23 N -0.241 5.241 24 S 0.578 5.422 25 C -0.210 4.210 26 C -0.210 4.210 27 C -0.209 4.209 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.179 0.821 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.231 0.769 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.242 -9.118 -2.666 21.460 hybrid contribution 1.286 2.682 1.182 3.201 sum 20.529 -6.436 -1.484 21.565 Atomic orbital electron populations 1.69623 1.05643 1.27560 1.49086 1.25038 0.95479 0.97967 0.97539 0.86697 0.79752 0.84107 0.78991 1.19559 1.20115 1.19540 1.19420 0.79204 0.96618 1.48257 0.86241 1.42207 1.07567 1.06195 1.66770 1.19689 0.88156 0.84588 0.84165 1.90563 1.69440 1.30852 1.54098 1.21764 0.94927 0.90762 1.01534 1.60353 1.03083 1.12349 1.53243 1.21492 0.88935 0.99249 0.91110 0.88918 1.21441 0.98071 0.97515 0.82243 1.45683 1.46698 1.38517 1.04640 1.16450 0.81200 0.82536 0.81438 1.90848 1.34181 1.28865 1.86246 1.28060 1.08772 1.06798 0.99458 1.24457 0.99079 0.99248 0.86712 1.70714 1.05922 1.03001 1.32252 1.78839 1.18432 1.19253 1.07596 1.82851 1.28756 1.21270 1.09313 1.23001 1.05095 1.00390 0.92519 1.22966 0.92133 1.02251 1.03634 1.22928 0.98044 1.03258 0.96682 0.91558 0.79725 0.92963 0.89633 0.82119 0.90419 0.90788 0.75284 0.76884 0.87386 0.88644 0.88845 0.88579 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.96 55.50 0.77 -24.54 16 2 C 0.04 1.16 5.50 -17.46 -0.10 1.06 16 3 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.43 10.16 -14.93 -0.15 -8.59 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 9 N -0.59 -13.46 5.09 -10.96 -0.06 -13.51 16 10 C 0.45 9.43 7.81 -10.99 -0.09 9.34 16 11 O -0.57 -14.05 15.70 5.54 0.09 -13.97 16 12 C 0.04 0.62 5.50 -4.97 -0.03 0.59 16 13 N -0.66 -7.92 5.55 -107.99 -0.60 -8.52 16 14 C 0.10 0.89 2.81 -67.71 -0.19 0.70 16 15 H 0.09 0.68 7.95 -51.93 -0.41 0.27 16 16 C 0.13 1.22 4.76 -4.04 -0.02 1.20 16 17 N -0.70 -7.05 5.38 -61.46 -0.33 -7.38 16 18 C 0.60 6.99 7.80 -12.64 -0.10 6.89 16 19 O -0.52 -7.51 16.98 5.26 0.09 -7.42 16 20 C -0.29 -3.07 6.81 -35.95 -0.25 -3.31 16 21 C 0.07 0.76 11.55 -17.80 -0.21 0.55 16 22 N -0.26 -3.11 11.54 30.36 0.35 -2.76 16 23 N -0.26 -3.16 12.51 60.35 0.75 -2.40 16 24 S 0.44 4.28 23.05 -107.50 -2.48 1.80 16 25 C -0.19 -1.56 3.80 -90.62 -0.34 -1.90 16 26 C -0.17 -1.20 10.18 -26.70 -0.27 -1.47 16 27 C -0.17 -1.42 10.04 -26.69 -0.27 -1.69 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 30 H 0.05 0.68 6.58 -51.93 -0.34 0.34 16 31 H 0.09 1.19 6.68 -51.94 -0.35 0.84 16 32 H 0.36 4.63 8.18 -39.29 -0.32 4.31 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.78 6.82 -51.93 -0.35 0.42 16 35 H 0.41 3.81 7.57 -40.82 -0.31 3.50 16 36 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.11 0.93 7.70 -51.93 -0.40 0.53 16 38 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -33.49 366.61 -7.41 -40.91 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -4.81 Total: 14.47 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.00 Total: 3.40 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.89 Total: -59.11 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.18 Total: -21.39 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.48 Total: 1.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.49 -7.41 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713862002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.868 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds