Wall clock time and date at job start Tue Mar 31 2020 22:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86797 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47222 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47258 * 30.00069 * 3 2 1 6 6 H 1.48498 * 109.46909 * 149.99976 * 3 2 1 7 7 C 1.38953 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99739 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99803 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00220 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99532 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00136 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46836 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99821 * 183.51033 * 13 12 10 15 15 H 1.09000 * 109.46706 * 176.53839 * 14 13 12 16 16 C 1.52993 * 109.47455 * 296.53681 * 14 13 12 17 17 N 1.46509 * 109.47272 * 305.00275 * 16 14 13 18 18 C 1.34768 * 119.99984 * 180.27558 * 17 16 14 19 19 O 1.21624 * 120.00386 * 359.72177 * 18 17 16 20 20 C 1.47171 * 119.99974 * 179.72026 * 18 17 16 21 21 C 1.38245 * 128.47433 * 179.97438 * 20 18 17 22 22 N 1.31243 * 111.88756 * 180.02562 * 21 20 18 23 23 N 1.27336 * 120.03844 * 0.02562 * 22 21 20 24 24 S 1.56635 * 109.74020 * 359.69376 * 23 22 21 25 25 C 1.53003 * 109.47092 * 56.53885 * 14 13 12 26 26 C 1.52993 * 117.50061 * 134.30313 * 25 14 13 27 27 C 1.53005 * 117.49730 * 65.64504 * 25 14 13 28 28 H 0.97002 * 119.99594 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00354 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47359 * 60.00801 * 12 10 9 31 31 H 1.08989 * 109.47437 * 300.00251 * 12 10 9 32 32 H 1.00894 * 111.00492 * 307.46579 * 13 12 10 33 33 H 1.09004 * 109.47476 * 184.99774 * 16 14 13 34 34 H 1.08999 * 109.47370 * 64.99849 * 16 14 13 35 35 H 0.96997 * 119.99595 * 359.97438 * 17 16 14 36 36 H 1.08001 * 124.05865 * 0.02562 * 21 20 18 37 37 H 1.09000 * 115.54939 * 279.97645 * 25 14 13 38 38 H 1.09007 * 117.50067 * 0.02562 * 26 25 14 39 39 H 1.09004 * 117.49882 * 145.01805 * 26 25 14 40 40 H 1.08997 * 117.49370 * 214.97880 * 27 25 14 41 41 H 1.08997 * 117.49944 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2034 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5608 -2.3705 -0.0011 13 7 6.0504 -3.7556 -0.0004 14 6 7.5165 -3.7956 0.0835 15 1 7.8487 -4.8320 0.1442 16 6 8.1168 -3.1397 -1.1615 17 7 7.5825 -3.7888 -2.3613 18 6 7.9772 -3.3775 -3.5825 19 8 8.7731 -2.4640 -3.6887 20 6 7.4451 -4.0337 -4.7875 21 6 7.7258 -3.7568 -6.1126 22 7 7.0658 -4.5459 -6.9277 23 7 6.2811 -5.4330 -6.4599 24 16 6.2920 -5.3767 -4.8946 25 6 7.9767 -3.0386 1.3310 26 6 9.0397 -3.7027 2.2083 27 6 7.5900 -3.6195 2.6926 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3634 -0.0007 30 1 5.9241 -1.8568 0.8890 31 1 5.9241 -1.8567 -0.8909 32 1 5.6307 -4.2872 0.7474 33 1 9.2013 -3.2479 -1.1422 34 1 7.8576 -2.0810 -1.1753 35 1 6.9479 -4.5176 -2.2766 36 1 8.4064 -2.9840 -6.4380 37 1 8.0078 -1.9531 1.2374 38 1 9.4116 -4.6788 1.8966 39 1 9.7700 -3.0540 2.6922 40 1 7.3672 -2.9161 3.4949 41 1 7.0075 -4.5407 2.6997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713862002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:08 Heat of formation + Delta-G solvation = 11.240484 kcal Electronic energy + Delta-G solvation = -26620.408323 eV Core-core repulsion = 22663.198489 eV Total energy + Delta-G solvation = -3957.209834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90856 -40.92532 -40.26822 -39.20490 -36.31528 -35.97440 -34.73805 -33.72503 -33.21188 -30.60251 -28.83159 -27.86309 -25.93568 -24.64796 -23.16320 -23.03661 -21.83792 -21.42440 -20.84906 -20.30621 -20.01464 -18.56745 -18.24989 -17.20853 -17.14877 -16.97507 -16.54868 -16.27025 -16.06810 -15.99993 -15.68968 -15.33804 -15.05038 -14.98497 -14.66967 -14.32633 -14.01649 -13.81380 -13.50210 -13.22454 -13.06364 -12.96127 -12.79249 -12.42166 -12.36634 -12.03791 -11.99434 -11.52698 -11.51181 -11.27513 -11.18485 -11.16534 -11.03631 -10.92406 -10.41764 -10.23773 -10.15795 -9.38750 -8.41370 -6.01279 -1.35393 -0.22846 0.41918 0.88210 1.28336 1.33872 1.41957 1.83011 1.92417 1.97044 2.21525 2.70124 2.96205 2.97585 3.15808 3.41144 3.58384 3.62981 3.72722 3.94786 4.12242 4.17639 4.19745 4.31995 4.42840 4.51492 4.57179 4.57677 4.78191 4.86416 4.96080 5.09609 5.24447 5.28847 5.32326 5.52243 5.89048 6.01112 6.29781 6.37976 6.56073 6.59480 6.89029 6.94984 7.41005 7.96606 8.76061 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007836 B = 0.003748 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.515400 B = 7469.692920 C = 9696.745776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.325 4.325 8 H 0.059 0.941 9 N -0.594 5.594 10 C 0.451 3.549 11 O -0.608 6.608 12 C 0.061 3.939 13 N -0.665 5.665 14 C 0.114 3.886 15 H 0.113 0.887 16 C 0.129 3.871 17 N -0.697 5.697 18 C 0.603 3.397 19 O -0.553 6.553 20 C -0.300 4.300 21 C 0.075 3.925 22 N -0.277 5.277 23 N -0.291 5.291 24 S 0.493 5.507 25 C -0.195 4.195 26 C -0.155 4.155 27 C -0.184 4.184 28 H 0.278 0.722 29 H 0.387 0.613 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.354 0.646 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.414 0.586 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.769 -6.695 -0.639 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.211 4.211 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.454 4.454 8 H 0.077 0.923 9 N -0.235 5.235 10 C 0.239 3.761 11 O -0.492 6.492 12 C -0.072 4.072 13 N -0.297 5.297 14 C 0.004 3.996 15 H 0.131 0.869 16 C 0.006 3.994 17 N -0.348 5.348 18 C 0.386 3.614 19 O -0.432 6.432 20 C -0.442 4.442 21 C -0.093 4.093 22 N -0.140 5.140 23 N -0.272 5.272 24 S 0.627 5.373 25 C -0.216 4.216 26 C -0.193 4.193 27 C -0.221 4.221 28 H 0.088 0.912 29 H 0.222 0.778 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.174 0.826 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.252 0.748 36 H 0.250 0.750 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.475 -8.159 -1.993 23.993 hybrid contribution 0.264 2.178 1.036 2.426 sum 22.739 -5.981 -0.957 23.531 Atomic orbital electron populations 1.69800 1.08036 1.29098 1.50531 1.26031 0.96372 1.02449 0.96293 0.85460 0.79619 0.77325 0.79755 1.18607 1.20055 1.15463 1.19004 0.81495 0.94896 1.49995 0.92272 1.42071 1.05829 1.07712 1.67936 1.20950 0.90925 0.83275 0.80978 1.90547 1.71309 1.32407 1.54935 1.21606 0.89343 0.92874 1.03340 1.60343 1.05273 1.10687 1.53415 1.21505 0.86425 1.00550 0.91160 0.86944 1.21543 0.98934 0.97021 0.81906 1.45707 1.46292 1.38292 1.04531 1.16504 0.80812 0.82155 0.81891 1.90833 1.35571 1.30191 1.86648 1.28073 1.09339 1.07400 0.99351 1.24782 0.98801 0.99134 0.86588 1.70746 1.06538 1.03547 1.33129 1.78674 1.19254 1.20005 1.09308 1.82622 1.27226 1.19917 1.07502 1.22940 1.06245 1.00356 0.92015 1.23034 0.91440 1.02716 1.02078 1.22951 0.99410 1.03164 0.96597 0.91246 0.77793 0.90511 0.88098 0.82598 0.89026 0.91529 0.74838 0.75047 0.87396 0.87437 0.88080 0.89005 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.96 21.67 0.30 -55.34 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.96 38.47 27.74 68.60 1.90 40.37 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 7 C -0.32 -18.47 10.16 84.04 0.85 -17.62 16 8 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 9 N -0.59 -26.84 5.09 -306.98 -1.56 -28.40 16 10 C 0.45 18.70 7.81 87.66 0.68 19.38 16 11 O -0.61 -30.72 15.70 -3.09 -0.05 -30.77 16 12 C 0.06 1.61 5.50 85.56 0.47 2.08 16 13 N -0.67 -14.47 5.55 -495.58 -2.75 -17.22 16 14 C 0.11 1.60 2.81 44.91 0.13 1.72 16 15 H 0.11 1.22 7.95 -2.39 -0.02 1.20 16 16 C 0.13 2.01 4.76 86.38 0.41 2.42 16 17 N -0.70 -12.26 5.38 -466.63 -2.51 -14.78 16 18 C 0.60 12.89 7.80 86.59 0.68 13.57 16 19 O -0.55 -14.85 16.98 -4.11 -0.07 -14.92 16 20 C -0.30 -5.94 6.81 24.62 0.17 -5.77 16 21 C 0.07 1.48 11.55 84.78 0.98 2.46 16 22 N -0.28 -6.59 11.54 -57.87 -0.67 -7.26 16 23 N -0.29 -6.91 12.51 37.02 0.46 -6.45 16 24 S 0.49 8.93 23.05 -56.49 -1.30 7.63 16 25 C -0.20 -2.55 3.80 -10.79 -0.04 -2.59 16 26 C -0.16 -1.61 10.18 30.62 0.31 -1.30 16 27 C -0.18 -2.56 10.04 30.62 0.31 -2.26 16 28 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.39 14.72 5.76 -92.71 -0.53 14.18 16 30 H 0.08 1.73 6.58 -2.39 -0.02 1.71 16 31 H 0.10 2.46 6.68 -2.39 -0.02 2.45 16 32 H 0.35 8.54 8.18 -89.70 -0.73 7.81 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.18 6.82 -2.39 -0.02 1.16 16 35 H 0.41 6.70 7.57 -92.71 -0.70 5.99 16 36 H 0.23 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.11 1.46 7.70 -2.39 -0.02 1.45 16 38 H 0.11 0.89 8.09 -2.38 -0.02 0.87 16 39 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.89 366.61 -1.74 -78.63 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.90 Total: 36.62 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.41 Total: 11.87 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -6.73 Total: -129.44 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.12 Total: -45.69 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.37 kcal Atomic # 16 Polarization: 8.93 SS G_CDS: -1.30 Total: 7.63 kcal Total: -76.89 -1.74 -78.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713862002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.873 kcal (2) G-P(sol) polarization free energy of solvation -76.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds