Wall clock time and date at job start Tue Mar 31 2020 22:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48500 * 109.47197 * 240.00060 * 3 2 1 5 5 H 1.48498 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47005 * 120.00254 * 3 2 1 7 7 C 1.38794 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99789 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00063 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99438 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99594 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46883 * 180.02562 * 14 13 11 16 16 C 1.30994 * 120.00204 * 124.99760 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46906 * 109.46794 * 125.27501 * 17 16 15 19 19 C 1.46899 * 110.99658 * 180.02562 * 18 17 16 20 20 C 1.50710 * 109.47002 * 179.97438 * 19 18 17 21 21 C 1.38236 * 119.58462 * 94.72504 * 20 19 18 22 22 C 1.38593 * 119.18411 * 179.77325 * 21 20 19 23 23 C 1.38881 * 118.40125 * 0.49740 * 22 21 20 24 24 F 1.35096 * 120.44427 * 179.76666 * 23 22 21 25 25 C 1.38427 * 119.11100 * 359.74730 * 23 22 21 26 26 N 1.31838 * 119.58837 * 275.00484 * 20 19 18 27 27 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47383 * 59.99931 * 10 9 7 29 29 H 1.09004 * 109.47325 * 299.99999 * 10 9 7 30 30 H 0.96999 * 120.00048 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47613 * 59.99379 * 14 13 11 32 32 H 1.09004 * 109.46865 * 299.99589 * 14 13 11 33 33 H 1.08002 * 119.99446 * 304.99290 * 15 14 13 34 34 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 35 35 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 36 36 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 37 37 H 1.00898 * 110.99970 * 56.04982 * 18 17 16 38 38 H 1.08999 * 109.47642 * 299.99582 * 19 18 17 39 39 H 1.08997 * 109.47569 * 60.00519 * 19 18 17 40 40 H 1.08000 * 120.40898 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.79734 * 180.21611 * 22 21 20 42 42 H 1.08000 * 119.63640 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.4850 -8.6837 -0.0006 16 6 3.5671 -9.6034 0.9286 17 6 4.7183 -10.5761 0.9262 18 7 5.3966 -10.5350 2.2286 19 6 6.5273 -11.4722 2.2630 20 6 7.1973 -11.4018 3.6111 21 6 6.8394 -12.3002 4.5989 22 6 7.4643 -12.2309 5.8340 23 6 8.4246 -11.2478 6.0343 24 9 9.0561 -11.1399 7.2237 25 6 8.7262 -10.3801 4.9988 26 7 8.1135 -10.4806 3.8354 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1245 -3.7312 -0.8905 30 1 3.8010 -6.1834 -0.0004 31 1 1.7227 -7.8747 -0.8925 32 1 1.7210 -7.8755 0.8874 33 1 4.2445 -8.6196 -0.7657 34 1 2.8074 -9.6679 1.6934 35 1 4.3428 -11.5829 0.7437 36 1 5.4230 -10.3031 0.1408 37 1 4.7491 -10.7214 2.9796 38 1 6.1648 -12.4855 2.0896 39 1 7.2444 -11.2051 1.4869 40 1 6.0845 -13.0489 4.4094 41 1 7.2074 -12.9220 6.6232 42 1 9.4713 -9.6121 5.1454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715796554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:37 Heat of formation + Delta-G solvation = -29.177520 kcal Electronic energy + Delta-G solvation = -23907.599034 eV Core-core repulsion = 19928.716582 eV Total energy + Delta-G solvation = -3978.882452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.50634 -40.73769 -39.13544 -37.39094 -35.47107 -33.35136 -33.08469 -32.39807 -31.55663 -29.57867 -27.64396 -25.67050 -25.32472 -24.49887 -23.15547 -22.45561 -20.55209 -19.85418 -18.23614 -17.88601 -17.80957 -17.09890 -16.38899 -16.29954 -16.01505 -15.89952 -15.40866 -15.17703 -14.81042 -14.77139 -14.45390 -14.41666 -13.92807 -13.85331 -13.60384 -13.57534 -13.12515 -12.97447 -12.60968 -12.49330 -12.40140 -12.13208 -11.70201 -11.35776 -11.01345 -11.01085 -10.74299 -10.54030 -10.13104 -9.88741 -9.78426 -9.48686 -9.26684 -9.03322 -8.92494 -8.76625 -8.20545 -6.46617 -6.18456 -3.88886 0.26918 0.50162 1.74574 2.96011 3.13545 3.14550 3.26183 3.30385 3.37371 3.40176 3.65250 3.85349 3.85719 4.07646 4.16655 4.23685 4.24593 4.42434 4.68720 4.73713 4.80676 4.95783 5.01696 5.11950 5.16506 5.18980 5.23455 5.24429 5.29013 5.36118 5.52698 5.61939 5.84053 5.94082 5.99627 6.18979 6.31073 6.33590 6.44689 6.68818 6.79110 7.30238 7.62486 7.76896 8.38268 8.65646 9.26703 10.88917 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.001529 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.297655 B =18311.711329 C =20075.921283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.735 5.735 14 C 0.150 3.850 15 C -0.154 4.154 16 C -0.140 4.140 17 C 0.090 3.910 18 N -0.677 5.677 19 C 0.110 3.890 20 C 0.121 3.879 21 C -0.138 4.138 22 C -0.108 4.108 23 C 0.046 3.954 24 F -0.129 7.129 25 C 0.080 3.920 26 N -0.435 5.435 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.400 0.600 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.343 0.657 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 -30.456 7.679 35.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.390 5.390 14 C 0.026 3.974 15 C -0.173 4.173 16 C -0.160 4.160 17 C -0.039 4.039 18 N -0.308 5.308 19 C -0.020 4.020 20 C -0.018 4.018 21 C -0.158 4.158 22 C -0.135 4.135 23 C 0.025 3.975 24 F -0.108 7.108 25 C -0.079 4.079 26 N -0.143 5.143 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.234 0.766 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.655 -29.563 6.864 34.149 hybrid contribution 1.907 -0.107 1.116 2.212 sum 17.562 -29.670 7.980 35.389 Atomic orbital electron populations 1.70009 1.05945 1.27527 1.46855 1.24987 0.95027 0.99005 0.94554 0.86226 0.79231 0.81243 0.78807 1.19942 1.20831 1.19938 1.22838 0.94904 0.91681 1.58971 0.90955 1.85375 1.05010 0.96304 1.96725 1.23531 1.06530 0.95320 1.04990 1.20329 0.86505 0.86303 0.75112 1.90699 1.15393 1.85617 1.47702 1.45981 1.10099 1.05087 1.77809 1.20259 0.94248 0.80322 1.02538 1.22918 0.99022 0.96052 0.99352 1.22700 0.97810 0.97008 0.98470 1.21034 0.94156 0.97013 0.91649 1.60397 1.11788 1.53638 1.05025 1.20788 0.93567 0.94669 0.92943 1.21206 0.93495 0.90952 0.96107 1.21945 1.00620 1.00592 0.92678 1.21671 0.95172 0.97809 0.98817 1.18888 0.96231 0.99198 0.83214 1.91542 1.80396 1.95489 1.43384 1.23013 0.99222 0.98070 0.87625 1.67578 1.06459 1.19354 1.20936 0.92157 0.89165 0.89189 0.76616 0.90829 0.91330 0.86579 0.86898 0.94007 0.90066 0.83871 0.93115 0.88701 0.83827 0.83390 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -15.46 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 11 C 0.53 10.17 7.85 -10.98 -0.09 10.09 16 12 O -0.52 -12.04 15.86 5.55 0.09 -11.95 16 13 N -0.74 -10.16 5.55 -61.47 -0.34 -10.50 16 14 C 0.15 1.76 6.11 -5.19 -0.03 1.73 16 15 C -0.15 -1.30 9.24 -36.02 -0.33 -1.64 16 16 C -0.14 -1.04 9.38 -36.02 -0.34 -1.38 16 17 C 0.09 0.53 6.12 -4.97 -0.03 0.49 16 18 N -0.68 -4.40 6.48 -116.33 -0.75 -5.15 16 19 C 0.11 0.59 5.99 -4.97 -0.03 0.56 16 20 C 0.12 0.81 6.29 -82.59 -0.52 0.29 16 21 C -0.14 -0.65 9.72 -39.45 -0.38 -1.04 16 22 C -0.11 -0.56 10.16 -39.21 -0.40 -0.96 16 23 C 0.05 0.32 7.35 -39.27 -0.29 0.03 16 24 F -0.13 -0.97 17.28 2.25 0.04 -0.93 16 25 C 0.08 0.58 11.17 -17.46 -0.20 0.39 16 26 N -0.44 -3.77 10.27 -9.41 -0.10 -3.86 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 30 H 0.40 4.46 8.46 -40.82 -0.35 4.12 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 33 H 0.12 0.86 7.84 -52.49 -0.41 0.45 16 34 H 0.11 0.82 7.84 -52.49 -0.41 0.41 16 35 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 37 H 0.34 1.96 8.72 -39.29 -0.34 1.62 16 38 H 0.05 0.17 8.04 -51.93 -0.42 -0.25 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -36.27 388.14 -9.60 -45.86 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.66 Total: 1.16 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.21 Total: -7.51 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.46 Total: -45.19 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.27 -9.60 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715796554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.683 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds