Wall clock time and date at job start Tue Mar 31 2020 22:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48500 * 109.47197 * 240.00060 * 3 2 1 5 5 H 1.48498 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47005 * 120.00254 * 3 2 1 7 7 C 1.38794 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99789 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00063 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99438 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99594 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46883 * 180.02562 * 14 13 11 16 16 C 1.30994 * 120.00204 * 124.99760 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46906 * 109.46794 * 125.27501 * 17 16 15 19 19 C 1.46899 * 110.99658 * 180.02562 * 18 17 16 20 20 C 1.50710 * 109.47002 * 179.97438 * 19 18 17 21 21 C 1.38236 * 119.58462 * 94.72504 * 20 19 18 22 22 C 1.38593 * 119.18411 * 179.77325 * 21 20 19 23 23 C 1.38881 * 118.40125 * 0.49740 * 22 21 20 24 24 F 1.35096 * 120.44427 * 179.76666 * 23 22 21 25 25 C 1.38427 * 119.11100 * 359.74730 * 23 22 21 26 26 N 1.31838 * 119.58837 * 275.00484 * 20 19 18 27 27 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47383 * 59.99931 * 10 9 7 29 29 H 1.09004 * 109.47325 * 299.99999 * 10 9 7 30 30 H 0.96999 * 120.00048 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47613 * 59.99379 * 14 13 11 32 32 H 1.09004 * 109.46865 * 299.99589 * 14 13 11 33 33 H 1.08002 * 119.99446 * 304.99290 * 15 14 13 34 34 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 35 35 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 36 36 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 37 37 H 1.00898 * 110.99970 * 56.04982 * 18 17 16 38 38 H 1.08999 * 109.47642 * 299.99582 * 19 18 17 39 39 H 1.08997 * 109.47569 * 60.00519 * 19 18 17 40 40 H 1.08000 * 120.40898 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.79734 * 180.21611 * 22 21 20 42 42 H 1.08000 * 119.63640 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.4850 -8.6837 -0.0006 16 6 3.5671 -9.6034 0.9286 17 6 4.7183 -10.5761 0.9262 18 7 5.3966 -10.5350 2.2286 19 6 6.5273 -11.4722 2.2630 20 6 7.1973 -11.4018 3.6111 21 6 6.8394 -12.3002 4.5989 22 6 7.4643 -12.2309 5.8340 23 6 8.4246 -11.2478 6.0343 24 9 9.0561 -11.1399 7.2237 25 6 8.7262 -10.3801 4.9988 26 7 8.1135 -10.4806 3.8354 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1245 -3.7312 -0.8905 30 1 3.8010 -6.1834 -0.0004 31 1 1.7227 -7.8747 -0.8925 32 1 1.7210 -7.8755 0.8874 33 1 4.2445 -8.6196 -0.7657 34 1 2.8074 -9.6679 1.6934 35 1 4.3428 -11.5829 0.7437 36 1 5.4230 -10.3031 0.1408 37 1 4.7491 -10.7214 2.9796 38 1 6.1648 -12.4855 2.0896 39 1 7.2444 -11.2051 1.4869 40 1 6.0845 -13.0489 4.4094 41 1 7.2074 -12.9220 6.6232 42 1 9.4713 -9.6121 5.1454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715796554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:36 Heat of formation + Delta-G solvation = -55.787079 kcal Electronic energy + Delta-G solvation = -23908.752911 eV Core-core repulsion = 19928.716582 eV Total energy + Delta-G solvation = -3980.036329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02716 -41.17917 -40.59405 -37.96770 -36.41641 -34.58129 -34.26110 -33.51551 -32.23254 -30.93007 -28.45473 -27.63816 -26.21675 -24.92881 -23.82516 -22.88599 -21.84363 -20.71647 -19.76995 -18.70574 -18.34476 -17.80753 -17.63286 -17.24403 -16.87594 -16.87031 -16.65001 -16.25831 -15.87968 -15.84500 -15.37348 -14.98230 -14.97127 -14.74786 -14.56464 -14.41273 -14.17692 -14.03833 -13.69981 -13.47715 -13.16349 -13.02324 -12.86904 -12.85191 -12.65919 -12.58498 -12.01089 -11.73423 -11.12333 -11.07966 -10.96301 -10.59964 -10.41129 -10.27705 -10.04711 -9.88840 -9.30155 -8.66251 -8.33774 -6.12128 -0.18187 0.08590 1.03329 1.31444 1.44626 1.49120 1.59954 1.61456 2.28055 2.46243 2.51170 2.96398 3.00102 3.23034 3.33842 3.44283 3.67863 3.77710 3.79502 3.87698 4.00627 4.11537 4.29594 4.30779 4.40254 4.50589 4.51901 4.56947 4.62576 4.66532 4.71617 4.84083 4.85579 4.90530 4.96021 5.39291 5.42335 5.57598 5.68946 5.80328 5.98410 6.20381 6.39650 6.52064 6.84738 7.07224 7.24396 8.75219 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.001529 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.297655 B =18311.711329 C =20075.921283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.150 3.850 15 C -0.163 4.163 16 C -0.125 4.125 17 C 0.094 3.906 18 N -0.693 5.693 19 C 0.113 3.887 20 C 0.108 3.892 21 C -0.129 4.129 22 C -0.106 4.106 23 C 0.032 3.968 24 F -0.138 7.138 25 C 0.064 3.936 26 N -0.468 5.468 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.347 0.653 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.095 -31.959 7.804 38.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.364 5.364 14 C 0.027 3.973 15 C -0.183 4.183 16 C -0.145 4.145 17 C -0.034 4.034 18 N -0.326 5.326 19 C -0.016 4.016 20 C -0.030 4.030 21 C -0.149 4.149 22 C -0.133 4.133 23 C 0.010 3.990 24 F -0.116 7.116 25 C -0.094 4.094 26 N -0.177 5.177 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.253 0.747 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.194 0.806 41 H 0.189 0.811 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 17.595 -31.108 6.991 36.416 hybrid contribution 1.359 0.173 1.108 1.762 sum 18.953 -30.934 8.100 37.172 Atomic orbital electron populations 1.70176 1.07956 1.28675 1.47914 1.26132 0.95984 1.03314 0.93708 0.85002 0.77806 0.75676 0.79495 1.18626 1.20327 1.18716 1.23183 0.95370 0.92029 1.59018 0.89922 1.85546 1.10572 0.99209 1.97060 1.23378 1.03560 0.94366 1.06802 1.20089 0.86230 0.86725 0.75142 1.90685 1.17401 1.86133 1.50396 1.45776 1.10357 1.04948 1.75276 1.20356 0.95635 0.79534 1.01812 1.22717 0.98565 0.96087 1.00905 1.22886 0.97897 0.96320 0.97352 1.21005 0.93466 0.97437 0.91528 1.60346 1.12228 1.54649 1.05339 1.20801 0.92924 0.95842 0.92001 1.21557 0.93279 0.91019 0.97179 1.22262 1.00534 1.00380 0.91732 1.22011 0.94175 0.97374 0.99708 1.19048 0.97049 1.00008 0.82892 1.91517 1.80719 1.95631 1.43774 1.23148 0.99730 0.98742 0.87791 1.67556 1.07739 1.20797 1.21607 0.91978 0.87341 0.87122 0.74685 0.91564 0.92255 0.85063 0.86917 0.92014 0.89929 0.83437 0.90338 0.89671 0.80590 0.81051 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.55 -31.76 9.50 67.95 0.65 -31.11 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 10 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 11 C 0.53 20.21 7.85 87.66 0.69 20.90 16 12 O -0.57 -26.90 15.86 -3.04 -0.05 -26.95 16 13 N -0.71 -18.61 5.55 -466.77 -2.59 -21.20 16 14 C 0.15 3.36 6.11 85.63 0.52 3.88 16 15 C -0.16 -2.42 9.24 25.65 0.24 -2.18 16 16 C -0.13 -1.55 9.38 25.65 0.24 -1.31 16 17 C 0.09 0.82 6.12 85.56 0.52 1.35 16 18 N -0.69 -7.31 6.48 -521.96 -3.38 -10.69 16 19 C 0.11 0.96 5.99 85.56 0.51 1.47 16 20 C 0.11 1.26 6.29 42.56 0.27 1.53 16 21 C -0.13 -0.89 9.72 22.35 0.22 -0.67 16 22 C -0.11 -0.89 10.16 22.51 0.23 -0.66 16 23 C 0.03 0.41 7.35 22.47 0.17 0.58 16 24 F -0.14 -2.04 17.28 44.97 0.78 -1.27 16 25 C 0.06 0.95 11.17 84.73 0.95 1.89 16 26 N -0.47 -7.89 10.27 -183.69 -1.89 -9.78 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 29 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.42 8.28 8.46 -92.71 -0.78 7.50 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.46 7.79 -2.38 -0.02 1.44 16 33 H 0.13 1.58 7.84 -2.91 -0.02 1.55 16 34 H 0.11 1.41 7.84 -2.91 -0.02 1.39 16 35 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16 37 H 0.35 3.09 8.72 -89.70 -0.78 2.31 16 38 H 0.08 0.22 8.04 -2.39 -0.02 0.20 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 41 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 42 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -81.38 388.14 -0.38 -81.76 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.51 Total: 15.90 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 6.10 Total: -7.93 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -7.57 Total: -97.89 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -81.38 -0.38 -81.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715796554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.975 kcal (2) G-P(sol) polarization free energy of solvation -81.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds