Wall clock time and date at job start Tue Mar 31 2020 22:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47175 * 240.00327 * 3 2 1 5 5 H 1.48496 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47384 * 120.00103 * 3 2 1 7 7 C 1.38801 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99861 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99982 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47063 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00305 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00008 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99865 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.46747 * 179.97438 * 14 13 11 16 16 C 1.31007 * 119.99886 * 127.01232 * 15 14 13 17 17 C 1.50699 * 119.99812 * 7.55684 * 16 15 14 18 18 N 1.46894 * 109.47167 * 127.15881 * 17 16 15 19 19 C 1.46904 * 111.00032 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.47133 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.58914 * 94.72637 * 20 19 18 22 22 C 1.38583 * 119.19106 * 179.77699 * 21 20 19 23 23 C 1.38887 * 118.39698 * 0.48793 * 22 21 20 24 24 F 1.35102 * 120.44026 * 179.77686 * 23 22 21 25 25 C 1.38414 * 119.11431 * 359.75393 * 23 22 21 26 26 N 1.31842 * 119.58957 * 275.00331 * 20 19 18 27 27 H 0.96996 * 119.99984 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47112 * 60.00278 * 10 9 7 29 29 H 1.08999 * 109.47041 * 300.00342 * 10 9 7 30 30 H 0.97000 * 119.99685 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.46777 * 60.00427 * 14 13 11 32 32 H 1.08999 * 109.47768 * 300.00251 * 14 13 11 33 33 H 1.07996 * 120.00738 * 307.00714 * 15 14 13 34 34 H 1.08001 * 120.00119 * 187.83354 * 16 15 14 35 35 H 1.09000 * 109.46958 * 247.15880 * 17 16 15 36 36 H 1.08999 * 109.47495 * 7.15716 * 17 16 15 37 37 H 1.00900 * 110.99977 * 56.04584 * 18 17 16 38 38 H 1.08997 * 109.47045 * 299.99750 * 19 18 17 39 39 H 1.09003 * 109.46744 * 60.00164 * 19 18 17 40 40 H 1.08005 * 120.39999 * 0.02562 * 21 20 19 41 41 H 1.07993 * 120.80075 * 180.22256 * 22 21 20 42 42 H 1.07997 * 119.63894 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3431 -0.0033 14 6 2.3305 -7.7150 -0.0023 15 6 3.4849 -8.6837 -0.0050 16 6 3.5497 -9.6280 0.9007 17 6 2.3912 -9.8543 1.8375 18 7 1.9951 -11.2682 1.7937 19 6 0.8659 -11.5267 2.6972 20 6 0.4882 -12.9839 2.6249 21 6 1.0115 -13.8713 3.5467 22 6 0.6549 -15.2085 3.4754 23 6 -0.2124 -15.6080 2.4668 24 9 -0.5837 -16.9023 2.3562 25 6 -0.6915 -14.6624 1.5769 26 7 -0.3329 -13.3974 1.6799 27 1 -0.4850 0.8400 0.0004 28 1 3.1252 -3.7318 0.8875 29 1 3.1238 -3.7309 -0.8925 30 1 3.8010 -6.1835 -0.0043 31 1 1.7203 -7.8751 -0.8912 32 1 1.7234 -7.8752 0.8887 33 1 4.2588 -8.5995 -0.7536 34 1 4.4352 -10.2414 0.9789 35 1 2.6883 -9.5915 2.8528 36 1 1.5502 -9.2317 1.5324 37 1 2.7760 -11.8694 2.0102 38 1 1.1528 -11.2757 3.7183 39 1 0.0142 -10.9157 2.3983 40 1 1.6868 -13.5258 4.3155 41 1 1.0454 -15.9235 4.1843 42 1 -1.3660 -14.9637 0.7891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715796559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:40 Heat of formation + Delta-G solvation = -21.232084 kcal Electronic energy + Delta-G solvation = -24130.054326 eV Core-core repulsion = 20151.516414 eV Total energy + Delta-G solvation = -3978.537912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.48654 -40.69688 -39.22027 -37.50798 -35.42233 -33.28874 -33.04738 -32.41755 -31.45715 -29.49086 -27.35105 -25.68168 -25.24123 -24.47490 -24.17749 -22.39891 -20.38359 -19.25707 -18.20175 -17.85330 -17.75042 -16.90028 -16.63109 -16.31708 -16.14464 -15.73132 -15.56515 -15.06819 -14.79895 -14.73834 -14.55396 -14.37389 -13.94789 -13.87567 -13.65649 -13.34019 -13.09114 -13.03183 -12.87000 -12.48935 -12.32380 -12.07786 -11.77442 -11.03566 -11.03153 -10.95129 -10.75999 -10.50671 -10.07750 -9.84310 -9.79384 -9.45020 -9.29014 -9.05198 -8.90822 -8.68316 -8.22467 -6.48670 -6.20331 -3.90945 0.30791 0.53846 1.73073 3.00248 3.11137 3.12715 3.24253 3.28835 3.35235 3.43587 3.69976 3.83032 3.92820 4.14082 4.19606 4.21694 4.29851 4.44091 4.72351 4.76891 4.87075 4.99598 5.06234 5.13755 5.14760 5.18601 5.27538 5.31812 5.36533 5.49146 5.59621 5.63511 5.83545 5.90982 6.03517 6.15485 6.23425 6.40376 6.48018 6.67416 6.87517 7.35422 7.60316 7.74083 8.36121 8.63561 9.24756 10.87043 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.001380 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.933126 B =20290.421363 C =20746.057299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.140 3.860 15 C -0.157 4.157 16 C -0.138 4.138 17 C 0.073 3.927 18 N -0.674 5.674 19 C 0.107 3.893 20 C 0.124 3.876 21 C -0.138 4.138 22 C -0.108 4.108 23 C 0.044 3.956 24 F -0.130 7.130 25 C 0.080 3.920 26 N -0.434 5.434 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.339 0.661 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.616 -31.465 7.387 33.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.390 5.390 14 C 0.017 3.983 15 C -0.176 4.176 16 C -0.157 4.157 17 C -0.055 4.055 18 N -0.305 5.305 19 C -0.023 4.023 20 C -0.014 4.014 21 C -0.159 4.159 22 C -0.135 4.135 23 C 0.023 3.977 24 F -0.109 7.109 25 C -0.079 4.079 26 N -0.142 5.142 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.157 0.843 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.671 -31.028 6.239 31.991 hybrid contribution 3.265 0.315 1.399 3.566 sum 7.936 -30.712 7.638 32.627 Atomic orbital electron populations 1.70005 1.05952 1.27557 1.46767 1.24985 0.95016 0.98995 0.94530 0.86229 0.79239 0.81269 0.78784 1.19938 1.20811 1.19964 1.22834 0.94882 0.91702 1.59076 0.90983 1.85402 1.04932 0.96273 1.96722 1.23531 1.06560 0.95356 1.04929 1.20327 0.86532 0.86267 0.75200 1.90707 1.15364 1.85579 1.47532 1.45981 1.09994 1.05123 1.77904 1.20426 0.94679 0.80227 1.03009 1.22875 0.99468 0.97115 0.98139 1.22631 0.97868 0.98974 0.96224 1.21276 0.97459 0.89224 0.97535 1.60406 1.09963 1.05304 1.54834 1.20826 0.95964 0.90274 0.95189 1.21227 0.93066 0.96539 0.90605 1.21954 1.00754 0.92610 1.00547 1.21656 0.96792 0.97345 0.97697 1.18887 0.99883 0.79948 0.99019 1.91537 1.89971 1.33805 1.95599 1.23012 0.98953 0.87822 0.98154 1.67602 1.10940 1.15614 1.20085 0.92131 0.89238 0.89196 0.76791 0.90782 0.90515 0.86291 0.86821 0.93965 0.88740 0.84305 0.92952 0.88389 0.83813 0.83446 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 11 C 0.53 9.93 7.85 -10.98 -0.09 9.84 16 12 O -0.52 -11.84 15.86 5.56 0.09 -11.75 16 13 N -0.74 -9.79 5.55 -61.47 -0.34 -10.13 16 14 C 0.14 1.65 5.76 -5.20 -0.03 1.62 16 15 C -0.16 -1.33 9.63 -36.03 -0.35 -1.68 16 16 C -0.14 -1.03 9.77 -36.03 -0.35 -1.38 16 17 C 0.07 0.56 5.77 -4.98 -0.03 0.53 16 18 N -0.67 -4.97 6.48 -116.34 -0.75 -5.72 16 19 C 0.11 0.74 5.99 -4.97 -0.03 0.71 16 20 C 0.12 0.93 6.29 -82.58 -0.52 0.41 16 21 C -0.14 -0.72 9.72 -39.45 -0.38 -1.11 16 22 C -0.11 -0.58 10.16 -39.21 -0.40 -0.98 16 23 C 0.04 0.31 7.35 -39.28 -0.29 0.02 16 24 F -0.13 -0.98 17.28 2.25 0.04 -0.94 16 25 C 0.08 0.61 11.17 -17.47 -0.20 0.41 16 26 N -0.43 -4.05 10.27 -9.42 -0.10 -4.15 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 30 H 0.40 4.09 8.46 -40.82 -0.35 3.75 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.95 5.30 -51.93 -0.28 0.67 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.89 5.30 -51.93 -0.28 0.61 16 37 H 0.34 1.97 8.71 -39.29 -0.34 1.63 16 38 H 0.05 0.26 8.04 -51.93 -0.42 -0.16 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -35.85 383.65 -9.45 -45.30 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.43 Total: 2.02 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.24 Total: -7.46 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.46 Total: -45.46 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.85 -9.45 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715796559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.067 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds