Wall clock time and date at job start Tue Mar 31 2020 22:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47175 * 240.00327 * 3 2 1 5 5 H 1.48496 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47384 * 120.00103 * 3 2 1 7 7 C 1.38801 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99861 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99982 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47063 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00305 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00008 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99865 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.46747 * 179.97438 * 14 13 11 16 16 C 1.31007 * 119.99886 * 127.01232 * 15 14 13 17 17 C 1.50699 * 119.99812 * 7.55684 * 16 15 14 18 18 N 1.46894 * 109.47167 * 127.15881 * 17 16 15 19 19 C 1.46904 * 111.00032 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.47133 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.58914 * 94.72637 * 20 19 18 22 22 C 1.38583 * 119.19106 * 179.77699 * 21 20 19 23 23 C 1.38887 * 118.39698 * 0.48793 * 22 21 20 24 24 F 1.35102 * 120.44026 * 179.77686 * 23 22 21 25 25 C 1.38414 * 119.11431 * 359.75393 * 23 22 21 26 26 N 1.31842 * 119.58957 * 275.00331 * 20 19 18 27 27 H 0.96996 * 119.99984 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47112 * 60.00278 * 10 9 7 29 29 H 1.08999 * 109.47041 * 300.00342 * 10 9 7 30 30 H 0.97000 * 119.99685 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.46777 * 60.00427 * 14 13 11 32 32 H 1.08999 * 109.47768 * 300.00251 * 14 13 11 33 33 H 1.07996 * 120.00738 * 307.00714 * 15 14 13 34 34 H 1.08001 * 120.00119 * 187.83354 * 16 15 14 35 35 H 1.09000 * 109.46958 * 247.15880 * 17 16 15 36 36 H 1.08999 * 109.47495 * 7.15716 * 17 16 15 37 37 H 1.00900 * 110.99977 * 56.04584 * 18 17 16 38 38 H 1.08997 * 109.47045 * 299.99750 * 19 18 17 39 39 H 1.09003 * 109.46744 * 60.00164 * 19 18 17 40 40 H 1.08005 * 120.39999 * 0.02562 * 21 20 19 41 41 H 1.07993 * 120.80075 * 180.22256 * 22 21 20 42 42 H 1.07997 * 119.63894 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3431 -0.0033 14 6 2.3305 -7.7150 -0.0023 15 6 3.4849 -8.6837 -0.0050 16 6 3.5497 -9.6280 0.9007 17 6 2.3912 -9.8543 1.8375 18 7 1.9951 -11.2682 1.7937 19 6 0.8659 -11.5267 2.6972 20 6 0.4882 -12.9839 2.6249 21 6 1.0115 -13.8713 3.5467 22 6 0.6549 -15.2085 3.4754 23 6 -0.2124 -15.6080 2.4668 24 9 -0.5837 -16.9023 2.3562 25 6 -0.6915 -14.6624 1.5769 26 7 -0.3329 -13.3974 1.6799 27 1 -0.4850 0.8400 0.0004 28 1 3.1252 -3.7318 0.8875 29 1 3.1238 -3.7309 -0.8925 30 1 3.8010 -6.1835 -0.0043 31 1 1.7203 -7.8751 -0.8912 32 1 1.7234 -7.8752 0.8887 33 1 4.2588 -8.5995 -0.7536 34 1 4.4352 -10.2414 0.9789 35 1 2.6883 -9.5915 2.8528 36 1 1.5502 -9.2317 1.5324 37 1 2.7760 -11.8694 2.0102 38 1 1.1528 -11.2757 3.7183 39 1 0.0142 -10.9157 2.3983 40 1 1.6868 -13.5258 4.3155 41 1 1.0454 -15.9235 4.1843 42 1 -1.3660 -14.9637 0.7891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715796559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:39 Heat of formation + Delta-G solvation = -47.794539 kcal Electronic energy + Delta-G solvation = -24131.206160 eV Core-core repulsion = 20151.516414 eV Total energy + Delta-G solvation = -3979.689746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.02611 -41.20083 -40.62413 -38.23908 -36.33413 -34.57579 -34.27247 -33.52660 -32.12794 -30.90062 -28.10748 -27.63661 -26.32611 -24.97238 -24.78552 -22.92078 -21.79325 -20.22890 -19.53388 -18.69665 -18.35371 -17.81910 -17.65323 -17.15746 -16.88582 -16.86334 -16.75638 -16.34231 -16.12412 -15.81041 -15.42794 -15.05537 -14.86808 -14.78293 -14.53313 -14.38293 -14.20056 -14.04197 -13.73524 -13.62575 -13.26190 -13.15750 -12.88858 -12.84615 -12.63823 -12.60727 -11.76026 -11.65254 -11.11622 -11.05403 -10.97312 -10.59409 -10.39941 -10.26321 -10.03389 -9.87478 -9.32838 -8.65723 -8.33127 -6.11579 -0.19267 0.08457 1.01879 1.31731 1.45184 1.49908 1.60140 1.62546 2.28683 2.43833 2.52137 2.94637 3.00941 3.20527 3.34646 3.44144 3.69227 3.75077 3.77415 3.85919 4.02076 4.08480 4.26735 4.27850 4.32775 4.42000 4.48072 4.52586 4.63594 4.70066 4.76399 4.83013 4.84343 4.93789 4.99935 5.39721 5.42858 5.56670 5.59730 5.82464 5.90659 6.20894 6.42522 6.54052 6.84773 7.07910 7.26268 8.75879 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.001380 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.933126 B =20290.421363 C =20746.057299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.707 5.707 14 C 0.139 3.861 15 C -0.167 4.167 16 C -0.120 4.120 17 C 0.072 3.928 18 N -0.683 5.683 19 C 0.109 3.891 20 C 0.110 3.890 21 C -0.127 4.127 22 C -0.103 4.103 23 C 0.034 3.966 24 F -0.136 7.136 25 C 0.065 3.935 26 N -0.472 5.472 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.417 0.583 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.351 0.649 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.177 0.823 41 H 0.175 0.825 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.143 -32.339 8.536 35.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.016 3.984 15 C -0.186 4.186 16 C -0.139 4.139 17 C -0.056 4.056 18 N -0.316 5.316 19 C -0.020 4.020 20 C -0.029 4.029 21 C -0.147 4.147 22 C -0.130 4.130 23 C 0.013 3.987 24 F -0.115 7.115 25 C -0.093 4.093 26 N -0.181 5.181 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.170 0.830 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.194 0.806 41 H 0.192 0.808 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.260 -31.948 7.387 33.816 hybrid contribution 2.195 0.404 1.080 2.479 sum 10.455 -31.544 8.467 34.293 Atomic orbital electron populations 1.70179 1.08015 1.28665 1.47948 1.26131 0.95946 1.03327 0.93697 0.85001 0.77794 0.75656 0.79517 1.18650 1.20451 1.18593 1.23185 0.95386 0.91980 1.58996 0.89818 1.85604 1.10676 0.99294 1.97067 1.23370 1.03510 0.94180 1.06915 1.20121 0.86233 0.86762 0.75172 1.90695 1.17530 1.86133 1.50314 1.45724 1.10374 1.04722 1.75325 1.20493 0.96118 0.79817 1.01953 1.22746 0.98911 0.97195 0.99739 1.22871 0.98159 0.98152 0.94732 1.21220 0.96831 0.89239 0.98335 1.60321 1.10516 1.05203 1.55524 1.20795 0.95112 0.89858 0.96254 1.21428 0.93315 0.97072 0.91055 1.22233 1.00251 0.92033 1.00206 1.22002 0.95697 0.97989 0.97276 1.19013 1.00515 0.79591 0.99615 1.91521 1.90148 1.34101 1.95703 1.23152 0.99537 0.87735 0.98921 1.67552 1.12359 1.16506 1.21635 0.92009 0.87036 0.87118 0.74541 0.92581 0.91205 0.84346 0.84136 0.92663 0.91110 0.82983 0.90557 0.90752 0.80572 0.80758 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.31 9.50 67.95 0.65 -30.66 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.80 7.85 87.66 0.69 20.49 16 12 O -0.57 -26.90 15.86 -3.04 -0.05 -26.94 16 13 N -0.71 -17.87 5.55 -466.79 -2.59 -20.46 16 14 C 0.14 3.20 5.76 85.63 0.49 3.69 16 15 C -0.17 -2.46 9.63 25.64 0.25 -2.22 16 16 C -0.12 -1.46 9.77 25.64 0.25 -1.21 16 17 C 0.07 1.00 5.77 85.56 0.49 1.49 16 18 N -0.68 -9.10 6.48 -521.98 -3.38 -12.48 16 19 C 0.11 1.43 5.99 85.56 0.51 1.94 16 20 C 0.11 1.55 6.29 42.56 0.27 1.82 16 21 C -0.13 -1.03 9.72 22.35 0.22 -0.81 16 22 C -0.10 -0.89 10.16 22.51 0.23 -0.66 16 23 C 0.03 0.46 7.35 22.47 0.17 0.62 16 24 F -0.14 -1.97 17.28 44.97 0.78 -1.19 16 25 C 0.07 1.02 11.17 84.73 0.95 1.97 16 26 N -0.47 -8.99 10.27 -183.70 -1.89 -10.88 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 30 H 0.42 7.43 8.46 -92.71 -0.78 6.64 16 31 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 1.75 5.30 -2.39 -0.01 1.74 16 33 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 1.34 5.30 -2.39 -0.01 1.33 16 37 H 0.35 3.20 8.71 -89.69 -0.78 2.42 16 38 H 0.08 0.61 8.04 -2.39 -0.02 0.59 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 40 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 42 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -81.57 383.65 -0.42 -81.99 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.50 Total: 17.12 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.06 Total: -6.94 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -7.57 Total: -99.78 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -81.57 -0.42 -81.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715796559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.191 kcal (2) G-P(sol) polarization free energy of solvation -81.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds