Wall clock time and date at job start Tue Mar 31 2020 22:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31241 * 124.05473 * 2 1 4 4 N 1.27341 * 120.03834 * 180.37017 * 3 2 1 5 5 S 1.56631 * 109.73703 * 359.68777 * 4 3 2 6 6 C 1.38243 * 124.05642 * 179.81016 * 2 1 3 7 7 C 1.47168 * 128.47642 * 359.97438 * 6 2 1 8 8 O 1.21622 * 120.00008 * 7.56062 * 7 6 2 9 9 N 1.34776 * 120.00163 * 187.56042 * 7 6 2 10 10 C 1.46497 * 120.00026 * 357.60059 * 9 7 6 11 11 C 1.46498 * 120.00119 * 177.59889 * 9 7 6 12 12 C 1.53514 * 114.17171 * 120.00310 * 11 9 7 13 13 N 1.47472 * 87.93415 * 87.81170 * 12 11 9 14 14 C 1.46899 * 110.99978 * 138.70603 * 13 12 11 15 15 C 1.50697 * 109.47393 * 170.00163 * 14 13 12 16 16 O 1.21298 * 120.00121 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00281 * 179.72435 * 15 14 13 18 18 C 1.37097 * 119.99872 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00384 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99957 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99918 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47231 * 59.99804 * 22 20 18 24 24 H 1.48504 * 109.47235 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47121 * 299.99551 * 22 20 18 26 26 C 1.47473 * 87.83648 * 27.01320 * 13 12 11 27 27 H 1.09001 * 109.47408 * 270.18581 * 1 2 3 28 28 H 1.09004 * 109.47612 * 30.18621 * 1 2 3 29 29 H 1.09006 * 109.47321 * 150.18918 * 1 2 3 30 30 H 1.08999 * 109.47282 * 276.11976 * 10 9 7 31 31 H 1.09008 * 109.47344 * 36.11600 * 10 9 7 32 32 H 1.09004 * 109.47173 * 156.11187 * 10 9 7 33 33 H 1.09001 * 113.25590 * 347.05382 * 11 9 7 34 34 H 1.09007 * 113.47159 * 333.04596 * 12 11 9 35 35 H 1.09002 * 113.53356 * 202.59377 * 12 11 9 36 36 H 1.08999 * 109.47444 * 49.99842 * 14 13 12 37 37 H 1.09003 * 109.47357 * 289.99924 * 14 13 12 38 38 H 0.97001 * 119.99989 * 359.97438 * 17 15 14 39 39 H 0.96999 * 120.00673 * 180.02562 * 21 20 18 40 40 H 1.08996 * 113.48030 * 87.75395 * 26 13 12 41 41 H 1.09001 * 113.48029 * 218.22222 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9982 -0.0071 5 16 3.9365 -0.5096 -0.0068 6 6 2.2811 -1.1453 0.0038 7 6 1.8394 -2.5491 0.0090 8 8 0.6608 -2.8163 -0.1282 9 7 2.7408 -3.5387 0.1657 10 6 4.1663 -3.2200 0.2783 11 6 2.2953 -4.9331 0.2236 12 6 2.8824 -5.8268 -0.8778 13 7 4.0299 -6.0798 0.0132 14 6 4.4328 -7.4916 -0.0351 15 6 5.7445 -7.6647 0.6863 16 8 6.2904 -6.7061 1.1908 17 7 6.3086 -8.8855 0.7755 18 6 7.5017 -9.0429 1.4323 19 1 7.9892 -8.1889 1.8787 20 6 8.0836 -10.3014 1.5237 21 7 7.4901 -11.3407 0.9810 22 14 9.7087 -10.5162 2.4193 23 1 9.5552 -10.0884 3.8330 24 1 10.1128 -11.9446 2.3759 25 1 10.7499 -9.6866 1.7613 26 6 3.1293 -5.8259 1.1531 27 1 -0.3634 0.0033 1.0276 28 1 -0.3634 0.8883 -0.5167 29 1 -0.3634 -0.8917 -0.5109 30 1 4.5932 -3.1072 -0.7183 31 1 4.2879 -2.2895 0.8330 32 1 4.6784 -4.0260 0.8039 33 1 1.2180 -5.0356 0.3546 34 1 3.1478 -5.2818 -1.7837 35 1 2.2858 -6.7163 -1.0807 36 1 4.5458 -7.8019 -1.0739 37 1 3.6700 -8.1038 0.4460 38 1 5.8702 -9.6527 0.3755 39 1 7.8960 -12.2194 1.0451 40 1 2.5980 -6.7148 1.4931 41 1 3.6040 -5.2801 1.9685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716734119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:28 Heat of formation + Delta-G solvation = 64.552859 kcal Electronic energy + Delta-G solvation = -26630.561382 eV Core-core repulsion = 22675.663346 eV Total energy + Delta-G solvation = -3954.898036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29584 -40.90808 -39.17818 -37.79635 -35.24197 -33.94252 -33.54558 -31.34859 -30.44346 -28.62572 -27.55489 -27.10300 -26.09536 -25.48620 -23.92487 -22.75031 -20.47553 -19.39502 -19.07699 -18.83641 -17.97901 -17.38346 -16.70682 -16.50352 -16.08723 -15.68464 -15.30231 -15.11576 -14.82263 -14.60242 -14.27519 -13.76930 -13.56745 -13.40617 -13.35946 -13.18721 -13.13698 -12.92732 -12.56863 -12.30079 -12.13785 -11.81868 -11.67180 -11.54628 -11.14255 -11.07919 -10.86142 -10.48433 -10.43083 -10.25742 -10.18209 -10.02640 -9.94463 -9.53982 -8.95506 -8.94886 -8.29114 -8.01454 -6.46309 -3.87381 -0.53348 0.53540 1.24297 1.66905 2.45998 2.61382 3.16161 3.22529 3.26336 3.62277 3.82562 3.86550 4.06888 4.17493 4.28086 4.30515 4.68874 4.80512 4.88895 5.00892 5.11469 5.25246 5.25936 5.28163 5.31289 5.39548 5.43201 5.53632 5.61897 5.63710 5.76728 5.84414 5.88017 6.17971 6.24227 6.36894 6.89363 7.02709 7.41750 7.50254 7.66000 8.00525 8.56324 9.13245 9.49254 10.00732 10.71313 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.002274 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.228779 B =12310.305279 C =13259.198939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.100 3.900 3 N -0.255 5.255 4 N -0.282 5.282 5 S 0.452 5.548 6 C -0.302 4.302 7 C 0.604 3.396 8 O -0.520 6.520 9 N -0.576 5.576 10 C 0.064 3.936 11 C 0.117 3.883 12 C -0.016 4.016 13 N -0.440 5.440 14 C 0.008 3.992 15 C 0.446 3.554 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.006 4.006 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.391 0.609 39 H 0.272 0.728 40 H 0.085 0.915 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 14.868 -3.658 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 N -0.121 5.121 4 N -0.261 5.261 5 S 0.590 5.410 6 C -0.443 4.443 7 C 0.390 3.610 8 O -0.398 6.398 9 N -0.307 5.307 10 C -0.081 4.081 11 C 0.012 3.988 12 C -0.146 4.146 13 N -0.162 5.162 14 C -0.124 4.124 15 C 0.231 3.769 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.135 4.135 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.073 16.695 -3.487 20.335 hybrid contribution -1.121 -1.930 0.237 2.244 sum -12.195 14.766 -3.250 19.424 Atomic orbital electron populations 1.20536 0.83930 1.05077 1.04254 1.22949 1.00162 0.85368 0.96256 1.70782 0.97178 1.28040 1.16085 1.78599 1.09361 1.19669 1.18466 1.83257 1.09150 0.98344 1.50259 1.27635 0.98465 0.99736 1.18436 1.16470 0.85437 0.81987 0.77070 1.90786 1.16164 1.82789 1.50030 1.47196 1.07540 1.05366 1.70635 1.22314 0.80363 1.02118 1.03343 1.22131 0.99720 0.79404 0.97525 1.24350 0.92901 0.99102 0.98274 1.68840 1.23488 1.20470 1.03437 1.22511 0.97974 0.90075 1.01884 1.19623 0.87248 0.84143 0.85892 1.90503 1.64965 1.39478 1.51231 1.41873 1.21194 1.07540 1.49604 1.19630 0.97429 0.95038 1.30799 0.87992 1.25259 0.99824 0.94990 0.97851 1.69597 1.39952 0.99895 1.44898 0.85924 0.81467 0.77092 0.79782 1.19921 1.20980 1.19877 1.24324 0.93639 0.98990 0.96594 0.89471 0.89913 0.87936 0.90958 0.92698 0.85522 0.86345 0.89306 0.89997 0.89280 0.92010 0.77546 0.91799 0.89732 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 9.98 36.00 0.36 -0.29 16 2 C 0.10 1.09 7.00 -82.85 -0.58 0.51 16 3 N -0.26 -3.11 11.54 33.42 0.39 -2.73 16 4 N -0.28 -3.34 12.51 60.35 0.75 -2.58 16 5 S 0.45 4.22 19.07 -107.50 -2.05 2.17 16 6 C -0.30 -3.23 6.50 -35.96 -0.23 -3.46 16 7 C 0.60 6.96 7.66 -12.64 -0.10 6.86 16 8 O -0.52 -6.88 14.39 5.26 0.08 -6.81 16 9 N -0.58 -6.20 3.11 -174.98 -0.54 -6.75 16 10 C 0.06 0.65 8.31 59.85 0.50 1.14 16 11 C 0.12 1.22 4.65 -67.72 -0.31 0.91 16 12 C -0.02 -0.17 7.31 -7.56 -0.06 -0.22 16 13 N -0.44 -6.05 4.28 -246.15 -1.05 -7.10 16 14 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 15 C 0.45 9.79 7.85 -10.99 -0.09 9.71 16 16 O -0.58 -14.60 16.01 5.54 0.09 -14.51 16 17 N -0.57 -13.65 5.29 -10.96 -0.06 -13.71 16 18 C -0.30 -8.06 9.68 -14.93 -0.14 -8.20 16 19 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 22 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.01 -0.07 6.72 -7.56 -0.05 -0.12 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.93 6.35 -51.93 -0.33 0.60 16 30 H 0.07 0.67 8.04 -51.93 -0.42 0.26 16 31 H 0.06 0.49 4.47 -24.57 -0.11 0.38 16 32 H 0.13 1.58 5.50 -51.93 -0.29 1.30 16 33 H 0.12 1.18 7.30 -51.93 -0.38 0.80 16 34 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 36 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 37 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 38 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.08 0.91 7.42 -51.93 -0.39 0.52 16 41 H 0.09 1.22 7.37 -51.93 -0.38 0.84 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -32.16 354.09 -6.79 -38.96 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.60 Total: 8.00 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.83 Total: 7.40 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.21 Total: -56.05 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.16 Total: -21.31 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -2.05 Total: 2.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.16 -6.79 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716734119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.509 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds