Wall clock time and date at job start Tue Mar 31 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31241 * 124.05473 * 2 1 4 4 N 1.27341 * 120.03834 * 180.37017 * 3 2 1 5 5 S 1.56631 * 109.73703 * 359.68777 * 4 3 2 6 6 C 1.38243 * 124.05642 * 179.81016 * 2 1 3 7 7 C 1.47168 * 128.47642 * 359.97438 * 6 2 1 8 8 O 1.21622 * 120.00008 * 7.56062 * 7 6 2 9 9 N 1.34776 * 120.00163 * 187.56042 * 7 6 2 10 10 C 1.46497 * 120.00026 * 357.60059 * 9 7 6 11 11 C 1.46498 * 120.00119 * 177.59889 * 9 7 6 12 12 C 1.53514 * 114.17171 * 120.00310 * 11 9 7 13 13 N 1.47472 * 87.93415 * 87.81170 * 12 11 9 14 14 C 1.46899 * 110.99978 * 138.70603 * 13 12 11 15 15 C 1.50697 * 109.47393 * 170.00163 * 14 13 12 16 16 O 1.21298 * 120.00121 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00281 * 179.72435 * 15 14 13 18 18 C 1.37097 * 119.99872 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00384 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99957 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99918 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47231 * 59.99804 * 22 20 18 24 24 H 1.48504 * 109.47235 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47121 * 299.99551 * 22 20 18 26 26 C 1.47473 * 87.83648 * 27.01320 * 13 12 11 27 27 H 1.09001 * 109.47408 * 270.18581 * 1 2 3 28 28 H 1.09004 * 109.47612 * 30.18621 * 1 2 3 29 29 H 1.09006 * 109.47321 * 150.18918 * 1 2 3 30 30 H 1.08999 * 109.47282 * 276.11976 * 10 9 7 31 31 H 1.09008 * 109.47344 * 36.11600 * 10 9 7 32 32 H 1.09004 * 109.47173 * 156.11187 * 10 9 7 33 33 H 1.09001 * 113.25590 * 347.05382 * 11 9 7 34 34 H 1.09007 * 113.47159 * 333.04596 * 12 11 9 35 35 H 1.09002 * 113.53356 * 202.59377 * 12 11 9 36 36 H 1.08999 * 109.47444 * 49.99842 * 14 13 12 37 37 H 1.09003 * 109.47357 * 289.99924 * 14 13 12 38 38 H 0.97001 * 119.99989 * 359.97438 * 17 15 14 39 39 H 0.96999 * 120.00673 * 180.02562 * 21 20 18 40 40 H 1.08996 * 113.48030 * 87.75395 * 26 13 12 41 41 H 1.09001 * 113.48029 * 218.22222 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9982 -0.0071 5 16 3.9365 -0.5096 -0.0068 6 6 2.2811 -1.1453 0.0038 7 6 1.8394 -2.5491 0.0090 8 8 0.6608 -2.8163 -0.1282 9 7 2.7408 -3.5387 0.1657 10 6 4.1663 -3.2200 0.2783 11 6 2.2953 -4.9331 0.2236 12 6 2.8824 -5.8268 -0.8778 13 7 4.0299 -6.0798 0.0132 14 6 4.4328 -7.4916 -0.0351 15 6 5.7445 -7.6647 0.6863 16 8 6.2904 -6.7061 1.1908 17 7 6.3086 -8.8855 0.7755 18 6 7.5017 -9.0429 1.4323 19 1 7.9892 -8.1889 1.8787 20 6 8.0836 -10.3014 1.5237 21 7 7.4901 -11.3407 0.9810 22 14 9.7087 -10.5162 2.4193 23 1 9.5552 -10.0884 3.8330 24 1 10.1128 -11.9446 2.3759 25 1 10.7499 -9.6866 1.7613 26 6 3.1293 -5.8259 1.1531 27 1 -0.3634 0.0033 1.0276 28 1 -0.3634 0.8883 -0.5167 29 1 -0.3634 -0.8917 -0.5109 30 1 4.5932 -3.1072 -0.7183 31 1 4.2879 -2.2895 0.8330 32 1 4.6784 -4.0260 0.8039 33 1 1.2180 -5.0356 0.3546 34 1 3.1478 -5.2818 -1.7837 35 1 2.2858 -6.7163 -1.0807 36 1 4.5458 -7.8019 -1.0739 37 1 3.6700 -8.1038 0.4460 38 1 5.8702 -9.6527 0.3755 39 1 7.8960 -12.2194 1.0451 40 1 2.5980 -6.7148 1.4931 41 1 3.6040 -5.2801 1.9685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716734119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:27 Heat of formation + Delta-G solvation = 39.913077 kcal Electronic energy + Delta-G solvation = -26631.629843 eV Core-core repulsion = 22675.663346 eV Total energy + Delta-G solvation = -3955.966497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.17662 -41.81493 -40.28243 -39.39856 -36.22359 -35.82320 -34.34977 -33.24179 -31.60993 -29.48526 -28.47450 -27.96066 -27.23440 -26.81055 -25.24740 -23.71073 -21.34182 -21.05201 -19.94147 -19.89263 -19.64772 -18.29705 -17.80057 -17.49038 -17.35946 -16.76825 -16.49932 -16.37916 -16.05896 -15.85441 -15.48147 -15.22043 -14.76386 -14.44382 -14.37069 -14.15282 -13.92009 -13.75140 -13.61340 -13.44921 -13.38915 -13.15485 -12.95823 -12.61782 -12.56172 -12.40862 -12.17873 -12.03181 -11.90284 -11.44963 -11.34030 -11.01772 -10.85723 -10.74985 -10.33099 -9.96698 -9.82718 -9.69843 -8.43577 -5.91435 -1.37165 -0.25952 0.42455 0.82344 1.41060 1.43064 1.53155 1.60516 1.74252 2.11992 2.30419 2.82344 2.84012 3.22041 3.23688 3.37704 3.48784 3.52086 3.78901 3.97057 4.19836 4.25401 4.30866 4.42960 4.44396 4.50438 4.57617 4.61762 4.68047 4.77121 4.79676 4.80764 5.00039 5.18675 5.33897 5.37317 5.43874 5.85903 6.05674 6.12763 6.59005 6.64771 6.77771 7.17264 7.62471 8.18281 8.73590 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.002274 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.228779 B =12310.305279 C =13259.198939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.097 3.903 3 N -0.276 5.276 4 N -0.309 5.309 5 S 0.506 5.494 6 C -0.318 4.318 7 C 0.607 3.393 8 O -0.538 6.538 9 N -0.576 5.576 10 C 0.067 3.933 11 C 0.124 3.876 12 C -0.006 4.006 13 N -0.465 5.465 14 C 0.021 3.979 15 C 0.445 3.555 16 O -0.615 6.615 17 N -0.579 5.579 18 C -0.329 4.329 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.989 3.011 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.272 1.272 26 C -0.007 4.007 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.395 0.605 39 H 0.276 0.724 40 H 0.100 0.900 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 14.669 -4.127 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 N -0.141 5.141 4 N -0.289 5.289 5 S 0.644 5.356 6 C -0.458 4.458 7 C 0.394 3.606 8 O -0.417 6.417 9 N -0.307 5.307 10 C -0.078 4.078 11 C 0.020 3.980 12 C -0.135 4.135 13 N -0.188 5.188 14 C -0.111 4.111 15 C 0.232 3.768 16 O -0.500 6.500 17 N -0.217 5.217 18 C -0.459 4.459 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.813 3.187 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.136 4.136 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.229 0.771 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.842 16.503 -3.968 20.696 hybrid contribution -0.882 -1.820 0.384 2.059 sum -12.724 14.683 -3.584 19.757 Atomic orbital electron populations 1.20602 0.82532 1.05414 1.05025 1.23301 1.01135 0.85090 0.95575 1.70814 0.97354 1.28841 1.17110 1.78428 1.09592 1.21452 1.19383 1.83000 1.07682 0.96605 1.48314 1.27663 0.99477 0.99480 1.19176 1.16492 0.85193 0.82220 0.76721 1.90775 1.16821 1.83110 1.51003 1.47247 1.07589 1.05563 1.70268 1.22263 0.79986 1.01773 1.03775 1.22107 0.99945 0.78999 0.96978 1.24390 0.91573 0.99896 0.97671 1.68823 1.25623 1.19063 1.05250 1.22389 0.94661 0.92022 1.02005 1.20787 0.88714 0.82742 0.84549 1.90476 1.66547 1.40490 1.52489 1.41964 1.20932 1.08577 1.50203 1.19586 0.99092 0.94853 1.32325 0.90333 1.25981 1.02676 0.94421 0.98295 1.69658 1.41064 1.00158 1.45443 0.85043 0.77692 0.77421 0.78539 1.19769 1.19773 1.19776 1.24373 0.93484 0.99810 0.95956 0.88411 0.88572 0.88489 0.89953 0.91660 0.87602 0.85315 0.89082 0.87499 0.87437 0.89492 0.77113 0.91453 0.88182 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.98 71.23 0.71 -0.48 16 2 C 0.10 2.01 7.00 42.65 0.30 2.31 16 3 N -0.28 -6.55 11.54 -48.19 -0.56 -7.11 16 4 N -0.31 -7.10 12.51 37.02 0.46 -6.64 16 5 S 0.51 8.85 19.07 -56.49 -1.08 7.77 16 6 C -0.32 -6.42 6.50 24.62 0.16 -6.26 16 7 C 0.61 13.13 7.66 86.59 0.66 13.79 16 8 O -0.54 -13.45 14.39 -4.10 -0.06 -13.51 16 9 N -0.58 -11.53 3.11 -825.77 -2.57 -14.10 16 10 C 0.07 1.29 8.31 127.77 1.06 2.35 16 11 C 0.12 2.33 4.65 45.45 0.21 2.54 16 12 C -0.01 -0.10 7.31 83.57 0.61 0.51 16 13 N -0.46 -11.95 4.28 -932.67 -3.99 -15.94 16 14 C 0.02 0.61 5.30 85.56 0.45 1.06 16 15 C 0.44 19.47 7.85 87.66 0.69 20.15 16 16 O -0.61 -31.50 16.01 -3.08 -0.05 -31.55 16 17 N -0.58 -28.14 5.29 -306.98 -1.62 -29.77 16 18 C -0.33 -18.01 9.68 84.04 0.81 -17.19 16 19 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 21 N -0.92 -48.59 13.05 21.66 0.28 -48.30 16 22 Si 0.99 41.95 29.55 68.60 2.03 43.97 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C -0.01 -0.15 6.72 83.57 0.56 0.41 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.21 8.14 -2.38 -0.02 1.20 16 29 H 0.10 1.65 6.35 -2.38 -0.02 1.64 16 30 H 0.08 1.42 8.04 -2.39 -0.02 1.40 16 31 H 0.07 1.08 4.47 -19.78 -0.09 0.99 16 32 H 0.11 2.61 5.50 -2.38 -0.01 2.60 16 33 H 0.13 2.24 7.30 -2.39 -0.02 2.22 16 34 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.11 1.46 7.91 -2.39 -0.02 1.44 16 36 H 0.11 2.77 8.08 -2.39 -0.02 2.75 16 37 H 0.09 2.13 7.30 -2.39 -0.02 2.11 16 38 H 0.40 18.25 7.90 -92.71 -0.73 17.52 16 39 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 40 H 0.10 1.90 7.42 -2.39 -0.02 1.88 16 41 H 0.08 1.97 7.37 -2.39 -0.02 1.95 16 Total: -1.00 -69.65 354.09 -0.16 -69.81 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.29 Total: 26.42 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.70 Total: 18.93 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -7.99 Total: -121.86 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.11 Total: -45.05 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 8.85 SS G_CDS: -1.08 Total: 7.77 kcal Total: -69.65 -0.16 -69.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716734119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.726 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds