Wall clock time and date at job start Tue Mar 31 2020 22:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99353 * 2 1 4 4 H 1.48503 * 109.46826 * 240.00083 * 3 2 1 5 5 H 1.48495 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46963 * 120.00256 * 3 2 1 7 7 C 1.38940 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99710 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.34785 * 119.99973 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00100 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99931 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47172 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00441 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47436 * 174.79796 * 14 13 12 16 16 H 1.08992 * 109.99788 * 54.73501 * 15 14 13 17 17 C 1.54329 * 109.88109 * 293.64060 * 15 14 13 18 18 C 1.55158 * 102.94130 * 218.39005 * 17 15 14 19 19 C 1.54694 * 101.67487 * 35.33661 * 18 17 15 20 20 N 1.47018 * 109.88117 * 175.83481 * 15 14 13 21 21 C 1.34777 * 125.65024 * 298.31634 * 20 15 14 22 22 O 1.21611 * 119.99733 * 354.82681 * 21 20 15 23 23 C 1.47442 * 120.00262 * 174.82455 * 21 20 15 24 24 C 1.37980 * 124.15468 * 180.02562 * 23 21 20 25 25 S 1.72103 * 104.03462 * 179.73555 * 24 23 21 26 26 N 1.56406 * 96.15267 * 0.26233 * 25 24 23 27 27 N 1.27413 * 109.87745 * 359.97438 * 26 25 24 28 28 H 0.96996 * 120.00680 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00017 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47313 * 59.99663 * 12 10 9 31 31 H 1.09004 * 109.46912 * 299.99823 * 12 10 9 32 32 H 1.00907 * 111.00184 * 56.04273 * 13 12 10 33 33 H 1.08999 * 109.46692 * 54.79273 * 14 13 12 34 34 H 1.09000 * 109.46868 * 294.80049 * 14 13 12 35 35 H 1.09003 * 110.71698 * 336.75491 * 17 15 14 36 36 H 1.08998 * 110.72402 * 100.02471 * 17 15 14 37 37 H 1.09003 * 111.00267 * 153.57425 * 18 17 15 38 38 H 1.08996 * 111.00627 * 277.39011 * 18 17 15 39 39 H 1.09006 * 110.38687 * 204.36146 * 19 18 17 40 40 H 1.09006 * 110.23538 * 82.11162 * 19 18 17 41 41 H 1.08001 * 127.98508 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2126 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0088 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3905 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9793 -0.0016 14 6 1.4985 -7.2708 -0.0016 15 6 2.5182 -8.4039 -0.1329 16 1 3.2719 -8.3196 0.6499 17 6 3.1929 -8.3446 -1.5196 18 6 3.3297 -9.8416 -1.9038 19 6 2.0399 -10.4403 -1.2945 20 7 1.8374 -9.7031 -0.0339 21 6 1.1474 -10.1490 1.0345 22 8 1.1279 -9.4972 2.0609 23 6 0.4160 -11.4271 0.9588 24 6 -0.3167 -11.9630 1.9980 25 16 -0.9438 -13.4303 1.3532 26 7 -0.2896 -13.2855 -0.0601 27 7 0.3844 -12.2057 -0.1169 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6176 -4.9205 -0.8914 31 1 0.6170 -4.9208 0.8887 32 1 2.8336 -5.9126 0.7798 33 1 0.8042 -7.3076 -0.8410 34 1 0.9467 -7.3849 0.9315 35 1 2.5596 -7.8193 -2.2345 36 1 4.1731 -7.8728 -1.4518 37 1 3.3472 -9.9671 -2.9864 38 1 4.2155 -10.2829 -1.4470 39 1 2.1723 -11.5037 -1.0951 40 1 1.1965 -10.2814 -1.9665 41 1 -0.4658 -11.5541 2.9864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716781808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:36 Heat of formation + Delta-G solvation = 15.754968 kcal Electronic energy + Delta-G solvation = -26240.207533 eV Core-core repulsion = 22283.193462 eV Total energy + Delta-G solvation = -3957.014071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57963 -40.05221 -38.26678 -37.72751 -35.23580 -33.80244 -32.74105 -31.72912 -31.21610 -30.23133 -27.57629 -26.73562 -25.22944 -24.40444 -22.99520 -22.24446 -21.14973 -20.54107 -19.32882 -18.66308 -17.83317 -16.98888 -16.72005 -16.52454 -16.16611 -15.74665 -15.41901 -15.21399 -14.56022 -14.44209 -14.29555 -13.84700 -13.70181 -13.49643 -13.34465 -13.11192 -12.85862 -12.55540 -12.32250 -12.21788 -11.70447 -11.56462 -11.47148 -11.39578 -11.04166 -10.86619 -10.82479 -10.65175 -10.54336 -10.45930 -10.42172 -10.37210 -10.18752 -9.47235 -8.94794 -8.41080 -8.02160 -7.92791 -6.38756 -3.79610 -0.41215 0.43849 1.01891 1.05765 2.55695 2.77676 3.22297 3.27605 3.32151 3.36223 3.94437 4.10611 4.18612 4.29221 4.37662 4.50902 4.62759 4.80742 4.86503 5.03406 5.16711 5.23667 5.27339 5.36492 5.56563 5.65048 5.69309 5.78303 5.85312 5.89082 5.95311 6.02543 6.18675 6.22524 6.30943 6.98526 7.13527 7.23252 7.57688 7.66153 7.74242 8.09018 8.64402 9.20586 9.57445 10.08994 10.78995 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.001967 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.520349 B =14230.146465 C =14991.994528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.663 5.663 14 C 0.049 3.951 15 C 0.142 3.858 16 H 0.082 0.918 17 C -0.112 4.112 18 C -0.139 4.139 19 C 0.103 3.897 20 N -0.595 5.595 21 C 0.615 3.385 22 O -0.521 6.521 23 C -0.018 4.018 24 C -0.235 4.235 25 S 0.462 5.538 26 N -0.292 5.292 27 N -0.207 5.207 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.350 0.650 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 -29.193 0.859 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.295 5.295 14 C -0.081 4.081 15 C 0.039 3.961 16 H 0.100 0.900 17 C -0.150 4.150 18 C -0.177 4.177 19 C -0.019 4.019 20 N -0.328 5.328 21 C 0.398 3.602 22 O -0.396 6.396 23 C -0.165 4.165 24 C -0.392 4.392 25 S 0.598 5.402 26 N -0.273 5.273 27 N -0.078 5.078 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.094 -30.172 -0.320 30.332 hybrid contribution -0.213 2.144 1.604 2.686 sum -3.308 -28.028 1.283 28.251 Atomic orbital electron populations 1.69605 1.05932 1.28232 1.50634 1.25265 0.95642 0.99726 0.97377 0.85910 0.78740 0.80453 0.79063 1.19882 1.21014 1.19929 1.19652 0.93344 0.82246 1.47607 0.87963 1.41856 1.09204 1.04593 1.64439 1.19788 0.88367 0.84682 0.84385 1.90516 1.13729 1.87075 1.55378 1.21650 0.94327 0.90837 1.01219 1.59997 1.18772 0.99500 1.51265 1.22251 0.95713 0.89042 1.01128 1.21606 0.93950 0.81102 0.99417 0.90043 1.22596 1.02209 0.95525 0.94649 1.22853 0.97158 0.96242 1.01470 1.22507 0.97962 0.97102 0.84376 1.48327 1.51100 1.18454 1.14883 1.16254 0.78659 0.82427 0.82872 1.90876 1.62585 1.56894 1.29242 1.22637 1.04110 0.99693 0.90033 1.28911 1.01900 1.01854 1.06583 1.81583 1.39237 1.15024 1.04363 1.78680 1.14490 1.16295 1.17814 1.71701 1.13509 0.98569 1.23994 0.91847 0.77462 0.89665 0.93855 0.83062 0.90981 0.94223 0.89756 0.89215 0.89553 0.90768 0.89122 0.90877 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 9 N -0.56 -14.60 5.29 -10.97 -0.06 -14.66 16 10 C 0.44 10.67 7.82 -10.98 -0.09 10.58 16 11 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 12 C 0.05 0.97 6.16 -4.98 -0.03 0.94 16 13 N -0.66 -11.06 5.88 -115.06 -0.68 -11.74 16 14 C 0.05 0.69 5.07 -3.82 -0.02 0.67 16 15 C 0.14 1.72 3.07 -66.95 -0.21 1.51 16 16 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.11 -1.16 6.27 -24.89 -0.16 -1.31 16 18 C -0.14 -1.12 7.07 -24.70 -0.17 -1.29 16 19 C 0.10 0.94 5.87 -2.65 -0.02 0.93 16 20 N -0.59 -6.79 3.07 -164.40 -0.50 -7.29 16 21 C 0.61 7.67 7.57 -12.51 -0.09 7.58 16 22 O -0.52 -7.91 15.98 5.27 0.08 -7.82 16 23 C -0.02 -0.18 6.75 -83.78 -0.57 -0.74 16 24 C -0.24 -1.66 11.21 30.64 0.34 -1.32 16 25 S 0.46 2.39 23.38 -107.50 -2.51 -0.12 16 26 N -0.29 -2.58 12.49 60.35 0.75 -1.82 16 27 N -0.21 -2.08 8.66 32.74 0.28 -1.79 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.35 6.13 8.49 -39.29 -0.33 5.79 16 33 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 34 H 0.04 0.61 6.91 -51.93 -0.36 0.25 16 35 H 0.08 0.93 7.78 -51.93 -0.40 0.52 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.82 6.44 -51.93 -0.33 0.49 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.21 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -33.95 362.56 -7.69 -41.63 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.06 Total: 12.55 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -1.25 Total: 9.41 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.52 Total: -61.49 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.51 Total: -0.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.95 -7.69 -41.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716781808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.387 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds