Wall clock time and date at job start Tue Mar 31 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99353 * 2 1 4 4 H 1.48503 * 109.46826 * 240.00083 * 3 2 1 5 5 H 1.48495 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46963 * 120.00256 * 3 2 1 7 7 C 1.38940 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99710 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.34785 * 119.99973 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00100 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99931 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47172 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00441 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47436 * 174.79796 * 14 13 12 16 16 H 1.08992 * 109.99788 * 54.73501 * 15 14 13 17 17 C 1.54329 * 109.88109 * 293.64060 * 15 14 13 18 18 C 1.55158 * 102.94130 * 218.39005 * 17 15 14 19 19 C 1.54694 * 101.67487 * 35.33661 * 18 17 15 20 20 N 1.47018 * 109.88117 * 175.83481 * 15 14 13 21 21 C 1.34777 * 125.65024 * 298.31634 * 20 15 14 22 22 O 1.21611 * 119.99733 * 354.82681 * 21 20 15 23 23 C 1.47442 * 120.00262 * 174.82455 * 21 20 15 24 24 C 1.37980 * 124.15468 * 180.02562 * 23 21 20 25 25 S 1.72103 * 104.03462 * 179.73555 * 24 23 21 26 26 N 1.56406 * 96.15267 * 0.26233 * 25 24 23 27 27 N 1.27413 * 109.87745 * 359.97438 * 26 25 24 28 28 H 0.96996 * 120.00680 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00017 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47313 * 59.99663 * 12 10 9 31 31 H 1.09004 * 109.46912 * 299.99823 * 12 10 9 32 32 H 1.00907 * 111.00184 * 56.04273 * 13 12 10 33 33 H 1.08999 * 109.46692 * 54.79273 * 14 13 12 34 34 H 1.09000 * 109.46868 * 294.80049 * 14 13 12 35 35 H 1.09003 * 110.71698 * 336.75491 * 17 15 14 36 36 H 1.08998 * 110.72402 * 100.02471 * 17 15 14 37 37 H 1.09003 * 111.00267 * 153.57425 * 18 17 15 38 38 H 1.08996 * 111.00627 * 277.39011 * 18 17 15 39 39 H 1.09006 * 110.38687 * 204.36146 * 19 18 17 40 40 H 1.09006 * 110.23538 * 82.11162 * 19 18 17 41 41 H 1.08001 * 127.98508 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2126 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0088 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3905 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9793 -0.0016 14 6 1.4985 -7.2708 -0.0016 15 6 2.5182 -8.4039 -0.1329 16 1 3.2719 -8.3196 0.6499 17 6 3.1929 -8.3446 -1.5196 18 6 3.3297 -9.8416 -1.9038 19 6 2.0399 -10.4403 -1.2945 20 7 1.8374 -9.7031 -0.0339 21 6 1.1474 -10.1490 1.0345 22 8 1.1279 -9.4972 2.0609 23 6 0.4160 -11.4271 0.9588 24 6 -0.3167 -11.9630 1.9980 25 16 -0.9438 -13.4303 1.3532 26 7 -0.2896 -13.2855 -0.0601 27 7 0.3844 -12.2057 -0.1169 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6176 -4.9205 -0.8914 31 1 0.6170 -4.9208 0.8887 32 1 2.8336 -5.9126 0.7798 33 1 0.8042 -7.3076 -0.8410 34 1 0.9467 -7.3849 0.9315 35 1 2.5596 -7.8193 -2.2345 36 1 4.1731 -7.8728 -1.4518 37 1 3.3472 -9.9671 -2.9864 38 1 4.2155 -10.2829 -1.4470 39 1 2.1723 -11.5037 -1.0951 40 1 1.1965 -10.2814 -1.9665 41 1 -0.4658 -11.5541 2.9864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716781808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:35 Heat of formation + Delta-G solvation = -10.664756 kcal Electronic energy + Delta-G solvation = -26241.353179 eV Core-core repulsion = 22283.193462 eV Total energy + Delta-G solvation = -3958.159717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28062 -40.91481 -40.13354 -38.73117 -36.65325 -35.79743 -33.50017 -33.27257 -32.49530 -31.35893 -28.45458 -27.99602 -26.46354 -25.76378 -24.25060 -23.03096 -21.89788 -21.40727 -21.06438 -19.97087 -19.49867 -18.02424 -17.70044 -17.42045 -17.23412 -16.85971 -16.61122 -16.49190 -16.08946 -15.86995 -15.42319 -15.19992 -15.07322 -14.90384 -14.30741 -14.06406 -13.89316 -13.60130 -13.49598 -13.27972 -13.22004 -13.05130 -12.85291 -12.70210 -12.43640 -12.12786 -12.11694 -11.88803 -11.63220 -11.50712 -11.45065 -11.20365 -11.18758 -10.90038 -10.39237 -10.02892 -9.84364 -9.41835 -8.46910 -5.96107 -0.96777 -0.08209 0.27295 0.51471 1.39987 1.41624 1.52944 1.70599 1.92183 2.03240 2.29119 2.64923 2.93031 3.19785 3.43156 3.52956 3.63072 3.66654 3.84231 3.88639 4.22342 4.23990 4.30701 4.31957 4.38009 4.47923 4.51796 4.66637 4.71856 4.88727 5.01006 5.03195 5.15254 5.30824 5.39687 5.40272 5.78905 6.03409 6.23962 6.26924 6.40182 6.58613 6.83504 7.11215 7.54301 8.09159 8.70350 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.001967 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.520349 B =14230.146465 C =14991.994528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.066 3.934 13 N -0.666 5.666 14 C 0.059 3.941 15 C 0.142 3.858 16 H 0.069 0.931 17 C -0.108 4.108 18 C -0.127 4.127 19 C 0.105 3.895 20 N -0.595 5.595 21 C 0.610 3.390 22 O -0.559 6.559 23 C -0.043 4.043 24 C -0.240 4.240 25 S 0.566 5.434 26 N -0.330 5.330 27 N -0.223 5.223 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.344 0.656 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -30.617 0.542 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.067 4.067 13 N -0.298 5.298 14 C -0.071 4.071 15 C 0.039 3.961 16 H 0.087 0.913 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.017 4.017 20 N -0.327 5.327 21 C 0.395 3.605 22 O -0.437 6.437 23 C -0.191 4.191 24 C -0.397 4.397 25 S 0.701 5.299 26 N -0.311 5.311 27 N -0.093 5.093 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.010 -31.631 -0.670 31.891 hybrid contribution -0.027 2.436 1.774 3.013 sum -4.037 -29.195 1.104 29.494 Atomic orbital electron populations 1.69671 1.06885 1.29408 1.50236 1.26083 0.96583 1.02535 0.96228 0.84959 0.77728 0.76459 0.79008 1.19567 1.19495 1.19684 1.19650 0.92771 0.83942 1.50020 0.90149 1.41925 1.09332 1.04728 1.65018 1.20727 0.88227 0.85969 0.82332 1.90485 1.15642 1.87893 1.56576 1.21516 0.94011 0.88273 1.02864 1.60010 1.18642 1.00126 1.51007 1.22204 0.96005 0.88222 1.00630 1.21527 0.93282 0.81082 1.00210 0.91321 1.22539 1.01552 0.97239 0.93322 1.22846 0.96791 0.94087 1.02771 1.22611 0.98598 0.97104 0.83384 1.48424 1.50572 1.18179 1.15483 1.16624 0.78425 0.83039 0.82455 1.90841 1.64043 1.58273 1.30545 1.22405 1.05680 0.99491 0.91485 1.29260 1.00877 1.02796 1.06765 1.81216 1.35766 1.11892 1.00984 1.78357 1.15583 1.16318 1.20795 1.71735 1.14336 0.98946 1.24273 0.91272 0.77023 0.87613 0.92340 0.83778 0.90182 0.95636 0.90163 0.89653 0.87404 0.90155 0.88773 0.90548 0.75901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 13.05 21.66 0.28 -50.22 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.33 16 3 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.33 -19.31 9.68 84.04 0.81 -18.50 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.17 5.29 -306.99 -1.62 -31.79 16 10 C 0.44 21.56 7.82 87.66 0.69 22.25 16 11 O -0.62 -34.90 15.78 -3.06 -0.05 -34.95 16 12 C 0.07 2.41 6.16 85.56 0.53 2.93 16 13 N -0.67 -22.33 5.88 -517.93 -3.04 -25.37 16 14 C 0.06 1.66 5.07 86.30 0.44 2.10 16 15 C 0.14 3.47 3.07 45.34 0.14 3.61 16 16 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 17 C -0.11 -2.18 6.27 31.78 0.20 -1.98 16 18 C -0.13 -1.85 7.07 31.91 0.23 -1.63 16 19 C 0.10 1.82 5.87 86.78 0.51 2.33 16 20 N -0.59 -13.53 3.07 -792.29 -2.43 -15.96 16 21 C 0.61 15.38 7.57 86.67 0.66 16.04 16 22 O -0.56 -17.44 15.98 -4.07 -0.06 -17.50 16 23 C -0.04 -0.85 6.75 41.36 0.28 -0.57 16 24 C -0.24 -3.03 11.21 67.76 0.76 -2.27 16 25 S 0.57 4.40 23.38 -56.49 -1.32 3.08 16 26 N -0.33 -5.26 12.49 37.02 0.46 -4.79 16 27 N -0.22 -4.27 8.66 -50.34 -0.44 -4.70 16 28 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 30 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.34 12.34 8.49 -89.69 -0.76 11.58 16 33 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 34 H 0.03 0.79 6.91 -2.39 -0.02 0.78 16 35 H 0.08 1.69 7.78 -2.39 -0.02 1.67 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.62 6.44 -2.38 -0.02 1.60 16 40 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.22 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -74.51 362.56 -0.89 -75.40 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.39 Total: 37.35 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 5.70 Total: 23.99 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -6.79 Total: -132.84 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.11 Total: -52.45 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.32 Total: 3.08 kcal Total: -74.51 -0.89 -75.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716781808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.735 kcal (2) G-P(sol) polarization free energy of solvation -74.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds